Austrofundulus limnaeus (annual killifish): 106519772
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Entry
106519772 CDS
T06063
Symbol
cdc40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106519772 (cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
alim03041
]
106519772 (cdc40)
Spliceosome [BR:
alim03041
]
Complex C
Other components
Step II factors
106519772 (cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
EIF3I
WDR55
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_TEP1_C
Beta-prop_SPT8
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
Beta-prop_Vps41
PQQ_2
Motif
Other DBs
NCBI-GeneID:
106519772
NCBI-ProteinID:
XP_013867021
UniProt:
A0A2I4BGZ7
LinkDB
All DBs
Position
Unknown
AA seq
581 aa
AA seq
DB search
MSAAIASLASYGSDSDSENESESNTSTEKVASVDPDATAHLKPLQSGQSMSLSVLNLAPE
VAVKESVETGXHLDPSLKEVTYNPTFETMFAPEFGPINPHQTQQMSAPRNMLSGYAEPAH
VNDFMFEQQRRTFSSFGYALDPSVDTQQLSSSSYIGAVDEAEKNKGMTVFETGQKKSEKR
KKVKGGDAGEIDNFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKNEEEAPGEEK
TILHVKDMYDYQGRSYLHVPQDVGINLRSADAPDKCYLPKKQIHVWSGHTKGVSAIRLFP
SSGHLLLSCSMDCKIKLWEVYGERRCLRTFIGHSKAVRDICYNNTGTQFLSAAYDRYLKL
WDSETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRTGEVVQEYDRHL
GAVNTITFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLAC
QSMDNQILIFGAQNRFRLNKKKVFKGHMVAGYACQVDFSPDMSYVVSGDADGKLNIWDWK
TTKLYHRIKAHDKVCISALWHPHETSKVITCGWDGQIKLWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgccatagcttccctcgcttcttacggtagcgattccgattctgaaaatgag
tctgaatccaataccagtaccgagaaagttgcctcggtggatccggacgctacggctcac
cttaaacctttacagtccggacaatcaatgtctttgtctgttttaaatttggccccggag
gtcgccgtgaaggagtctgtcgaaactggcrtacacttggacccttcactaaaagaagtc
acttataacccaacatttgaaaccatgtttgcacccgagtttggaccaataaaccctcat
cagacccagcagatgtctgcccccaggaatatgctgtctggctatgcggaacctgcccac
gtcaatgactttatgtttgaacagcaaagaaggacattctcctcatttggttatgcttta
gatccttctgttgacacacaacagttatcctccagcagctacattggtgccgtagatgag
gctgaaaaaaacaaagggatgacagtgtttgaaactggtcagaagaagtcagagaaacgg
aaaaaggtcaaaggtggmgatgcaggagaaatcgacaacttccttggaccgtgggcaaaa
tatgtggatgagaaagatgtggccaaaccttcagaggaagagcagaaagagctggatgaa
atcacagccaaaaggcagaagaaaggaaagaatgaggaggaggctccaggagaggagaag
accattctccatgttaaagacatgtatgactaccagggcaggtcgtaccttcatgtccca
caggatgtgggcatcaacttgcggtccgcagatgctccrgataaatgttaccttccgaag
aaacaaattcatgtctggtcaggacacaccaagggtgtcagtgcaatccgattattcccc
agctcaggtcatctgctgctctcctgctccatggactgtaagatcaagttgtgggaggtg
tacggtgagcggaggtgtcttcgtacgtttatcggtcacagcaaagcagtgcgagacatt
tgctacaacaacactggaacccagtttctcagcgccgcgtacgaycgatacctgaaactg
tgggactctgagactggtcagtgtatctcccgcttcaccaacaggaaggttccgtactgc
gtcaagttcaacccagacgaagacaagcagaatctgtttgtggccggcatgtcggataaa
aagattgttcagtgggacatcaggacaggtgaggtggttcaggagtacgatcgccacctg
ggcgctgtcaacaccatcacctttgttgacgagaatcgccgttttgtcagcacgtcagac
gacaagagtcttcgagtttgggagtgggacatccctgtggattttaagtacattgctgag
cccagtatgcactccatgccagctgtgacactatctcccaatggtaaatggctggcctgt
cagtctatggataaccagattcttatctttggagcccaaaaccgcttcagactgaacaaa
aagaaagtctttaaaggccacatggtggccggttacgcctgycaggtggacttctctcca
gacatgagttatgtagtgtccggggacgcagatggaaagctcaacatctgggactggaag
acaaccaagctctaccacaggatcaaggctcatgataaagtgtgcatcagcgccctgtgg
catccgcatgaaacatccaaggtgatcacctgtggatgggatggacagattaaactctgg
gactaa
DBGET
integrated database retrieval system
