Austrofundulus limnaeus (annual killifish): 106519792
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Entry
106519792 CDS
T06063
Symbol
syne1
Name
(RefSeq) nesprin-1 isoform X1
KO
K19326
nesprin-1
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
106519792 (syne1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
alim03036
]
106519792 (syne1)
Chromosome and associated proteins [BR:
alim03036
]
Eukaryotic type
Centrosome formation proteins
LINC complex
106519792 (syne1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
SYNE1
Spectrin_SYNE1
KASH
SR_desmoplakin_3
PRK
Motif
Other DBs
NCBI-GeneID:
106519792
NCBI-ProteinID:
XP_013867051
UniProt:
A0A2I4BH26
LinkDB
All DBs
Position
Unknown
AA seq
2590 aa
AA seq
DB search
MSIPGGVLLEAETSSPLDQLRQRWENLNKDQSTKLQLSLNSFEQDQLSPVLHRSRLTSPN
VAFRSEAFNQDSSCPGALFEACSRTLERIKEEAADSHSKLAASFGGTTVQQDLYAAVSAA
SSWLDTAENHLLSGPVLLSEDVETQLTNLEVLSKRLKRLTGEVNQCRDLLGGGTARLCGG
EERALMEDTLEGLQERMGLLDSALVQHCDSMRDRLQDHSTFQNELRMLLTALTECKHQLL
HKMAGTADRPASKQIEMLAELEDSLREFEQRVAELRSRADGLQSDQTSKQELLKLQDAYE
ELVLMVGSRRSSLNQGLSLKAQYEAALRDLTDLIDTAQDKMAADQKMTVASVIEVQILLE
KHKEFFQGLECHMILTQTFYSKVSSLVAQRENQTLEETMTLAQNVLKQAHRRGVELEGIL
ESWSRLMEDYQALCRQLEAVECSIPTVGLVEETEERLIERISLYQRLKTSLTEHQPQLYQ
VLEEGKRLLLSVGCSDLENQLTQLGDHWLSSTTKVNKELHRLDSTLKHWSRYLRESAELS
YWLQFALDRLEFWTTQSVTVPQELETVRDHLCAFLEFSKEVDAKSSLRSSVLSTGNQLLR
LKRVDTAGLRTAQGQIDTQWAELLTRIPVVQEKLHQLQMEKLASRHAITELMSWISLMEN
IIEEDHNKIMGAVGSEVVQNFLQKYKGFRIDLTCKQLTVDFVNQSVLQISSQDVEGKRSD
KTDFAEKLGAMNRRWQILQGLITEKIQLLKGLVEGWLEHENGVQALKSWLTLQEEKLKKK
HRIEDVASVQNALKDCQELEDLVKEKEKDLEKAEERGNALIQDKKGEACSVVKETLKGLN
QSWANLDHMISQMKVSLRSMLEQWTLYRRASEEINGYLMEGRYSVSRLRLLNGSLEAVQQ
QVESLENLQEEMEKQESSLRKFGSVTHQLLTECHPSVAETLNRALQNVNIRWNHLLEQIS
EELRSSKALLGLWQRYRSLYSQCLTAVQKQEERAERLLRSATDREITEEESNAWTKNCDD
CLSDQDPAQQTLQQLQVFGEQLRSRVDASSSASLTSDHLSLAHRLAALEHALHRQREALQ
HGSQACEGFREQLDVLISRAREAEEVLKESDSAGSPELTVVQTRMEELKEHLLKLSSLTP
DLERVNELMYRLPVSDKDVKRLQSLNRAWASHSAHLTERFSKLQSVLLQHQSFLQKCEAW
MDFLSQTEQKLAAEISGNLESLMEQQRDHELFQAEIFSRQQILYSIISDGHRLLDLGQVD
DSDDFSVKLALLSNQWQCVVRRAQQRRGIIDSLVHQWQNYREMSEKLRHWLQEVSCDPDV
LQPGEPVALQQARNVLGQIQRPLVNLNPLYPLSLSLLLQLRERALQRQQGVYILTIEAGR
SLLLSADVPSESTLQTELMEIQERWRHAHHHLDQQRRELHGLLKNWERCEKGINMSLEKL
RAFKRKLSTPLPEHHEELHSEQIRCKELESSVEGWTDDLTSLFLLRDSLEGVVSGDDITA
LQERLQLLQRQWEEVCHQLSLRRQQVSEKLNEWAVFNEKNKELCEWLTQMESKVSQNGDV
SIEEMIKKLRKDYQEEISVAQENKQQLQVMGERLARASQDSKAAEIQHKLSKVSERWQHL
LDLIAARVKKLRETLVAVQQLDKNMSSLRSWLSHIETELSRPIVYDTCNSQEIQRKLHHQ
QELQRDIEKHSTGVASVLNLCEVLLHDCDACSTETECDSIQQATRGLDRRWRNICAMSME
RRLKIEETWRLWQKFLDDYSRFEEWLKTSEKTAALPNSSEVLYTVAKEEHKKFEAFQRQV
QECLTQLELINKQYRRLARENRTDAAYRLKEMVHDGNRRWDNLQKRVAAILRRLKHFISQ
REEFETARDSILVWLTEMDLQLTNIEHFSECDVQAKIKQLRAFQQEIYMNTAKIELVFRQ
GEALIEKSEPLDAAIIEEELEELQRYCQEVFGRVDRYYKKLTRLPLADDELDGSDRELDV
EEGGDLAEMQWGESASPRTSSRPPSGAAAIIRAERSGRDTPASVDSIPLEWDHDYDLSRD
LESPGGRGERSRGQEEEDEYLRTSATVLSDVVIPESPEAYIKLTENTLKSSSGEPGQLEA
SLRQLDQALDAGRFHLQQREAAAAANRSSPDVDSTYMGYMRLMGDCRGSIDAAKRAEEEL
TEDEDDMTGLGNPAGTDAQNAGVIERWELVQAQSLSEKHRHKQNLQQWQQLISDLQTTRA
WLGQSEAELSRARGLDVSTNIHSIQQRIKKLKELQRGMEAHKSEVLSINLSSADFLQSEP
DSEEAWELRDRLKEMNSRWDRLGVSLEDWREELQRALMQCQEFHELSHGLLLWLENIDRR
RNEVVPVPLKADRETLRAHHRTLTQIKCELLDSQQKASSLQELSAQLLVSTKPSGLRSPE
QTWAQSSQCLEAREKVHVIWNRLKLLQREVGSDLEGLEMRLEALDRPQQGCLSGLTGKLE
ICGSTSPETEKTVQNRKQSPRAKSSQAHPGPPESGSRHSRSTSPGAAGCVSSRSELPGGA
SSSSSSSSKHQSFLLRVFRAALPVHLLLLLLIGLACLVPMTEEDYSCHHANNFARSFHPM
LRYTNGPPPV
NT seq
7773 nt
NT seq
+upstream
nt +downstream
nt
atgtccatacctggtggagtgctgctggaggctgagacctcgtctcctctggaccagctg
aggcaacgatgggaaaacttaaataaagatcagagcaccaaacttcagctctccctcaac
tcctttgagcaagaccagctcagcccggtccttcaccggtctcgtctgaccagtccaaat
gtggcgttcaggagcgaggctttcaaccaggattcttcctgtcctggagccttgttcgag
gcctgtagccggactctggaacgaatcaaagaagaggcagcggacagccacagtaaactg
gcagcatcgtttggagggacgacggttcagcaggacctgtacgctgcagtatctgcagcc
tcctcctggttggacacagcagagaatcacctgctttctggtcctgtgctgctgtcagaa
gatgtagagactcagctcacaaacctggaggttctgagtaaacgtctgaagaggttaact
ggagaggtgaaccagtgcagagaccttctgggtggaggaaccgctcggctgtgtggagga
gaggagcgagccctgatggaggacacactcgagggtctgcaggagaggatgggcctcctg
gactcggctcttgtgcaacactgtgacagcatgagggacaggctgcaggaccactcgact
ttccagaatgaactgaggatgttgctcacagccctgactgaatgtaaacatcagctgctg
cataagatggctggaactgctgaccgacctgcatccaaacagatagagatgttggcagag
ctggaggacagcttacgggagtttgaacagagagtggctgagctgcggagccgagctgac
ggcctccaatcagatcaaacctccaagcaggagctcctaaaactacaggatgcgtacgag
gagctggtgctcatggtgggctccagacgtagtagcctaaaccagggcttgtctctgaag
gctcagtacgaagcagcacttcgtgacctcacagacctgattgacacagctcaagacaag
atggctgccgaccaaaaaatgacggtggcttctgtgatagaggtccagatcctgttggaa
aaacacaaagagtttttccagggacttgaatgccatatgatcctcacccagacattttac
agtaaagtgtcgagtctggtggcgcagagggaaaaccaaaccctcgaagaaaccatgact
ttggcccaaaatgtgcttaaacaagcccacaggaggggggtggagctggaaggcatcttg
gagtcgtggagcaggctgatggaggattatcaggctttgtgcagacagttggaggctgtg
gagtgcagcatccccactgtgggtctggttgaagagacagaagagaggcttattgaaagg
atcagtctctaccagcgtctgaagacgagcctcacagagcatcagccgcagctgtaccag
gttctggaggagggcaagagacttctcttgtccgtcggctgctccgacttggagaaccag
ctgacccagctgggcgatcactggctctcctccaccactaaagtcaacaaggagctgcat
cgactcgactccacgctcaaacactggagcaggtacctgagggaatctgcagagttgagc
tactggttgcagtttgctctcgacaggctggagttctggaccacccagtcggtgacagta
cctcaggagctggagactgttagagaccacctgtgtgccttcctggagttttccaaagag
gtggatgccaaatcgtcgttgcgttcgtctgtgctgagcacgggcaaccagctcctgcgt
ctgaaaagagtggacacggccggtctgaggacggcgcagggccaaatcgacacgcagtgg
gccgagctgctcacgcgtatccctgtagtgcaagagaagctgcaccagctgcaaatggag
aagctggcatcgcgacacgccatcacagagctgatgagctggatctctctcatggagaac
atcatagaggaagatcacaacaaaatcatgggggctgtgggctcggaggtggtccagaac
tttctgcagaagtacaagggtttccgtatagatctgacctgtaagcagttgacggtggac
tttgtgaaccagtctgtgctgcagatcagcagtcaggatgtggagggaaaacgcagcgac
aaaacagactttgctgagaagctgggcgctatgaacagaagatggcagatacttcagggg
cttattactgaaaaaattcagcttttgaaaggacttgtggaaggttggttggagcacgaa
aacggagtccaggctttgaaaagctggctcacgttgcaggaagagaaattaaagaagaag
cacaggatagaggacgtagcatcagtgcagaatgcattaaaggactgtcaggagttggag
gacctagtgaaggaaaaagagaaagatttagagaaagcagaggaaagagggaatgctctg
atccaggataagaaaggtgaagcctgctcagttgtgaaggagaccctcaaaggactgaac
cagtcctgggctaatttggaccacatgataagtcagatgaaggtgagtctgcggtccatg
ctggagcagtggactctgtaccggcgagcttcagaagaaatcaatggctacctgatggag
gggagatattcagtttccagactgcgactccttaacgggtctttagaggcagtgcagcag
caggtggaaagtctggagaacttacaggaggagatggagaagcaggagagcagtctgagg
aagtttggatctgtaactcatcagctgctgaccgaatgtcacccatctgtagctgaaacc
ctcaacagagcacttcaaaatgttaacatcaggtggaaccatctactcgaacagatctca
gaagagctgaggagcagtaaggccttgttgggtctgtggcagcgctacaggtcattgtac
agccagtgtttgacggccgttcagaaacaggaagagcgcgccgaacgtctgctgaggagc
gccactgacagggagatcacagaggaggagagcaacgcctggaccaaaaactgtgacgac
tgcctgagcgaccaagatccggcgcagcagaccctccagcagctgcaagtgttcggcgag
cagctgaggagccgagtcgacgcctcctcctctgcctcgctcacgtccgaccacctgtcg
ctcgctcatcgcctagcagcgctcgagcacgccctccacaggcagcgggaagccctgcag
cacggatctcaagcctgcgagggtttcagggagcaactagatgtgttgataagtagagcg
agggaggctgaggaagtgctgaaggagtcggactcagcgggttcaccagaactcacggtr
gtccagacacgcatggaagaacttaaggagcatctgttgaagctgagcagtctcactcca
gacttggagcgtgttaatgagttgatgtacagattaccagtcagcgacaaagacgttaaa
cggctccaaagcctcaacagagcctgggcgtctcactcggctcacctcacagagaggttc
agcaaactgcagtcagttctgctccagcaccagagtttcctccagaagtgtgaggcctgg
atggatttcctgtctcagactgaacagaaactggctgcwgagatttcgggcaacttggag
agtttgatggagcaacagagagaccacgagttgttccaggcagaaatattcagcaggcag
cagattctttactccatcatcagcgacgggcatcgtttgttggacttgggacaagtggac
gacagcgatgacttcagcgtgaaactggccttgctgagcaatcagtggcagtgtgtggtg
agacgggcgcagcagcggagaggcatcatcgacagtctggtgcaccagtggcagaactac
agggagatgtcagaaaagctgcggcattggctgcaggaagtgagttgtgatccggaygtc
ctccagccaggagaaccagtggccctgcagcaggccagaaacgtattaggtcaaatacag
cgtcccttagtaaacctgaacccactctaccctctgtctctgtccctgctcctccagctg
agagaacgagcgctccagaggcagcagggagtctacatcctgaccatcgaggccggcagg
agcctgctgctgtcagccgacgtgccgtctgagtccacactgcagaccgagctcatggag
atacaggagaggtggaggcacgcccaccaccacctggaccagcagaggagggagctgcac
ggcttgcttaagaactgggagcgatgtgagaagggcatcaacatgtcactggagaagctg
agggcctttaagagaaagctgtccacacctctgcctgaacatcatgaggagcttcactcc
gagcaaatcagatgcaaggagctggagagcagcgtggaaggttggaccgatgacctcact
tccttgttcctgctgagggattccttrgagggcgtggtcagtggcgatgacatcacggcc
ttacaggaacgcctccagctgctgcagcgccagtgggaggaggtttgtcaccagctgtcg
ttgcggcggcagcaggtgagtgaaaagctgaacgagtgggccgttttcaacgagaagaac
aaggagctgtgcgagtggctcacgcagatggagagcaaagtctcccagaatggagatgtc
agcatcgaggagatgattaaaaagctgcgcaaggactaccaagaggagatcagtgtcgcc
caggaaaacaagcagcagctgcaggtgatgggtgagcgtctggccagggccagccaagac
agcaaggcggctgagattcagcacaagctcagcaaagtcagcgagcgctggcaacacctg
ctggacctgatcgcagccagggtgaaaaagttgcgggagaccctggtggcggtgcagcag
ctggacaagaacatgagcagcctgcgttcctggctgtcccacatcgagaccgagctctcc
aggcccatcgtctacgacacctgcaacagccaggagatccagagaaaactccaccaccaa
caggagctgcagcgggacatagagaagcacagcacaggcgtggcgtcggtgttgaacctg
tgtgaagtgctgctgcacgactgcgacgcctgctccaccgaaacggagtgcgactccatc
cagcaggccaccagaggcctggaccggcgctggaggaacatctgcgccatgtccatggag
aggaggctcaagattgaagagacgtggaggctgtggcagaagtttctggatgattactcc
aggtttgaggagtggctgaagacctccgaaaaaacggcagcgctgcccaactcctctgaa
gtcctgtacaccgtcgcgaaagaggagcacaagaagtttgaggccttccagcgtcaggtg
caggaatgtctgacccagttggaactcatcaacaagcagtaccgccgtctggcccgggag
aaccggacggacgcggcttaccgtctcaaagaaatggtgcatgatgggaacaggaggtgg
gataacctgcagaaaagagtggccgccatcctgcgcagactgaagcacttcatcagtcag
agggaggagtttgagacggcgcgggacagcatcctggtgtggctcacagagatggacctc
cagctgaccaacatcgagcatttttctgagtgtgacgttcaggccaaaataaaacagctc
cgggccttccagcaggagatctacatgaacacggcaaagatagagctggttttcaggcag
ggcgaagcgctgatcgagaagagcgaacctctggacgccgccatcatcgaggaggagtta
gaggagctgcagagatactgtcaggaggtgttcggacgagtggacagatactacaagaag
ctcacgcggttgcccctggcggacgacgagctcgatggttcagacagagagctggacgtg
gaggaagggggagacctcgctgagatgcagtggggggagtcggcctcgcctcggacatcc
agccgcccaccctcaggcgcggcggccatcattcgggccgagcgctcgggtcgagacacc
ccggccagcgtggactccatccccttagagtgggaccacgactacgacctgagcagagac
ctggagagtcctggagggcgaggggagcggagccgaggccaggaggaggaggatgagtat
ctgaggacgtctgctacagtgctgtcagatgtagttatcccagagagcccagaggcctat
ataaaactgactgagaacactttgaaatcctcctctggtgagccgggtcaactggaggcc
agtctgaggcagctggatcaggctctggacgcagggcgcttccacctccagcagagagag
gccgccgccgccgccaaccgctccagccccgacgtcgactccacctacatgggctacatg
cgtctgatgggagactgtcgcggcagcatcgacgcagcaaagagagcggaggaagagctg
accgaagacgaggacgacatgacgggactcggcaaccccgccggcacagacgcgcagaac
gcaggtgtgattgagcgctgggagctggtgcaggctcagtctctcagtgagaaacacagg
cacaaacagaacctgcagcagtggcagcagctgatctcagacctgcagaccacgagggcg
tggctgggccagtcggaggcggagctgagccgagcgcgagggctggacgtcagcaccaac
atccacagcatccagcagaggatcaagaagctcaaggagctgcagaggggaatggaagct
cacaagtccgaggtcctctccataaacctgagcagcgcggacttcctccaatcggagccc
gactctgaggaggcctgggagctgcgggaccggctgaaggagatgaactcgcgctgggat
cgactgggcgtctcgctggaggactggcgagaggagctgcagagggcgctgatgcagtgc
caggagtttcatgagctgagccacggtctgctgctgtggttggagaacatcgaccgcagg
aggaacgaggtggtgcccgtccctctgaaagccgaccgggaaacgctacgagctcatcac
agaacactgacgcaaatcaaatgcgagctgctggactcgcagcagaaagcctcgtccctg
caggagctgtcggcacagctgctggtcagcaccaaaccttcgggcctgcgctcgccggag
cagacgtgggctcagagcagccagtgcctggaggcccgcgagaaggtccacgtgatctgg
aacaggctgaagcttcttcagagggaggttggctcagacctggaggggctggagatgaga
ctggaagccctggacaggcctcagcagggttgcctatcaggattaacaggaaaactagaa
atctgcggatccacaagtcctgaaacagagaagaccgtccaaaaccgcaaacaatcgccc
cgagccaaaagtagtcaggcccacccaggaccccctgagagcggctcgcgccacagccgg
agcacatcaccaggcgccgctggctgcgtttcctcccgttctgagcttcccggcggcgcc
tcctcctcctcctcctcctcctcaaagcaccagtccttcctgcttcgagtcttcagggcc
gcgctccccgtccacttgctcctcctgctcctcatcggcctggcctgcctggtgcccatg
acggaggaggactacagctgccaccacgccaacaacttcgcccgctccttccacccgatg
ctgcgctacaccaacggacctccgcccgtatga
DBGET
integrated database retrieval system
