Austrofundulus limnaeus (annual killifish): 106520226
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Entry
106520226 CDS
T06063
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106520226 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106520226 (edc4)
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106520226 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
106520226 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
AAA
Motif
Other DBs
NCBI-GeneID:
106520226
NCBI-ProteinID:
XP_013867651
UniProt:
A0A2I4BIT1
LinkDB
All DBs
Position
Unknown
AA seq
1384 aa
AA seq
DB search
MAANSNIDIQGATQHLRDILKLDRPGSSADPQPSDGQRKLSFNGELNGLLGTGLLGSTDR
SAMSESTRPISTDLSSVQESQRICLTGDDGTTCIPITSSNVEIVASQDSSINSKARGSNR
VKIQPVAKYDWEHKYYYGRLIAVSSSFLVYAIKGANNHAMIRVLSLDFNERTLLKGFRGA
VTDLAFAHLDSSLLGCVDEAGNLMVWQLTFTGSKILDQMVVHIQRPEDTPLDSHRRLVWC
PFIQDDGEENQDDASQTLALLHEDRAEVWDLEVLRANNSSWPVDASELKEGLITVKGHSK
RVSQGALSPDGTVLATASHDGFIKFWQIYIEGGHDKPRCLHELRPHGGRPLSCLLFCDNH
KRQDPEVPFWRFLITGADQNQELKLWCTVSWNCLQSIRFCPDPLTSSILPSLKASLDLSA
EYLILTDVQRKVLYVMELRQDLEKGKASFTAVSEFLLTHPVLSFGVRDVTHTRLRHTEVL
PAEEDTESMSAEGAQGPAESKSGIQIKLYCVHTKSLQDVQIWFQPNFASNSSGFLPHSDS
QEALASFSDLLTDQSSDKESGSGSQTDLRKIPPLPAPSDFLSNSAAGGGAMPKLMTPDAF
MTPSTSVPASPGSSASSLTIVTAISSNSDRAMDDVSQSPSRGDNSSSSLGHSASTSSPRS
AGVLLPGLENLAVLGSPTSPLALDSPQVLDSPLLPLMASPTRARSPDVISSASTALSQDM
PEIASQTLQLQRGHGSGLEALPLSALQTDSMASAASALHLLTSPRAAGNNSLLPLELGGG
DVGASAAADPEPRLSNQPSLLENALSQENPGVGGSSDISLTPWPAAPDITRETRNSLRDN
GLEDCSREEPQERHLSPPFHRRSYHLPQNDSRDAAAEQSDPDDEISSLASSGNCGSRSSH
RIQVKEWKTSPRGSPKLKRKMKKDDSEFSQPRHMDPAQFNTETQDELLMLLRAQQRELSE
MSALMETMPGTIMAQVEHLLLKHQDQEHRRLDRVLAESQNHQQRLQEQLGQQLGHALSSA
LSSRMDKVLREELKKTVPPTISKSLEPVTGQLNNTIAAKLTAVEVTLKDNVSKVVKSKNL
TDSIGRAAAEAIQGPIQTAYKEAFQTTVLPVFERGCQTMFQQINDSFKQGTHEYIQQLDA
HMKNRKQREQEARDPMITQLQQMIDGFQSSTDQLASSITATVRAEVQHQMQMMVGNLQES
ILSHVQRIVKGEVSQAMKEQQAVVTSSIMQAMRSAAGTPVPTAHLDYQTQQASILQFLQQ
GQLNQAFQQALSASDLNLVLYVCETIDSQQVFGQTPCPLSQPVLLSLIQQLSSNLSTRSE
LKISYLEDAVMNLDHSDPLTRDHMSSVVVQVRPKLLAFLQQDPHSPLCKTVRRLMMMLQG
LVSH
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgaactctaacatagatatccagggagccacccagcacctccgggacatcctg
aagctcgaccggcccgggagcagcgccgaccctcagcccagtgacggtcagagaaaactc
tcctttaacggagagctgaacggtttactgggaaccggcctgctgggaagcaccgaccgc
tcagccatgtccgaatctaccagacccatctccacggacctcagcagcgttcaggagagt
cagaggatctgcctgaccggggacgacgggaccacctgcatccccatcacctccagcaac
gtggagatcgtggcgagtcaggactcgagcatcaacagcaaggcccgaggcagcaacagg
gttaaaattcagcctgttgccaaatacgactgggaacacaagtattattatggcagactg
atagctgtgtccagctccttcctggtttacgccattaaaggagccaataaccacgccatg
atccgggtcctaagtttagattttaacgagcgcaccctgctgaagggattcaggggggcc
gtcacagatctggctttcgcccacctcgactcgtctctgctgggctgcgtcgacgaggcg
ggaaacctgatggtttggcagctcactttcaccggcagcaaaatcctggatcagatggtg
gttcatatccagcgaccggaggacacgccgctggactcccaccgccgtctcgtctggtgc
ccgttcatccaggacgacggcgaggagaaccaggacgacgccagccagactctggccctg
ctgcatgaagaccgggccgaggtttgggatctggaggtcctgagagccaacaacagcagc
tggcccgtcgatgcctctgagctcaaagaaggtctcatcacagtcaaaggtcacagcaag
cgagtcagtcaaggagccttgtctcctgatgggacggtgttggccacggccagccatgac
ggcttcatcaagttctggcagatctacatagaaggtggacatgacaagcccagatgtctt
catgagctgcgtcctcacggaggacggcccctgtcctgcctcctgttctgtgacaaccac
aagagacaggatccagaggttcccttctggaggtttctgataacgggggcggaccagaac
caggagctgaagctgtggtgcaccgtttcctggaactgtctgcagtccatcaggttctgt
cctgatccgttgacctcgtcgattctgccgagcctcaaggccagtttggatctttctgct
gagtatctgattctgacagacgtgcagaggaaggttctgtacgtgatggagctgcggcag
gacctggagaagggaaaggcgagcttcacggcggtgtcggagttcctgctcacccacccc
gtgctcagcttcggggtccgggacgtcacccacacccgcctgcggcacaccgaggtcctc
cctgcggaggaggacactgagagcatgtcagcagagggtgcccaaggacctgcagagtcc
aaatctgggatccagattaaactctactgtgttcacaccaagagtttgcaggacgtccag
atctggtttcagcccaactttgcttccaactcgtctggatttcttccccactctgattcc
caggaggctttggcttcgttttcagatcttctcacagaccagagctccgataaggaatct
ggaagtggctcgcagacggacctcagaaaaatcccaccgcttcccgccccctcagacttc
ctgtccaactcggcggccggcggcggagccatgcccaagctgatgactccagacgccttc
atgacaccgagcacttcggtcccggcgtctcccggcagcagcgccagcagcctgaccatc
gtgaccgccatcagcagcaactctgacagagcgatggatgacgtcagtcagagtcccagc
agaggagataacagcagcagcagtttgggacactcggcctccaccagcagccccagatct
gctggagttctgctgcccggactggagaacctggcggtgttggggtctcctaccagtccc
ctggccctcgacagccctcaggtcctggattctcccctcctgcccctcatggcgtctcca
accagagcgcgctcccctgacgtcatctcctcggcctccacggctctgtcccaggacatg
ccggagatcgcctcgcagaccctgcagctccagaggggccacgggtccggactggaggcc
ttacccctctccgcccttcagacggacagcatggcctcggccgcctccgctctgcacctg
ctgacctcaccgcgcgctgctggcaacaacagcttgttgcctcttgaactcgggggcgga
gacgtgggggcgagcgcggcggccgaccccgagcccaggctcagcaaccagccgtccctg
ctggagaacgctctgtctcaggaaaaccccggagtgggcgggtcctcagacatcagcctc
acgccgtggccggctgcccccgacatcaccagagagaccaggaacagcctgagggacaac
ggcctggaggactgctcgagggaggagccccaggagagacacctgagcccacctttccat
cgccgctcctatcacctcccgcagaacgacagtcgagacgccgccgccgagcagagcgac
cccgacgatgagatctccagcctggcctcctctgggaactgcggctcccgctcctctcac
aggatccaggtcaaagagtggaagacgtcgcctcgaggctcgcccaaactgaagaggaag
atgaagaaagacgacagtgagttttctcagccccgacacatggatcctgcacagttcaac
acagaaactcaggacgagctgctgatgctgctgcgggcccagcagagggagctgtccgag
atgtcggcgctgatggagaccatgcccggtaccatcatggctcaggtggagcacctgctg
ctgaagcaccaggaccaggagcaccgcagactggaccgagttctggcagagagtcagaac
catcagcagcggcttcaggagcagctgggccagcagctgggccacgccctcagctcggcg
ctgagcagcaggatggacaaggtgctgcgagaggagctgaagaaaaccgtccctccaacg
atttccaaaagtctggagccggtgacgggtcagctgaacaacacgatagcagctaaactg
acggccgtggaggtcaccctgaaagataacgtcagcaaggtggtgaaatccaagaaccta
acggactcgatcggtcgagcggcagccgaagcgattcagggaccgatccagacggcctac
aaagaggccttccagaccaccgtgctgcccgtcttcgaaagaggctgccagaccatgttt
cagcaaatcaacgacagcttcaagcaaggaacgcacgaatacatccagcagctcgacgcc
cacatgaagaacaggaagcagagggagcaggaggcgcgggaccccatgatcacgcagctc
cagcagatgatcgatggcttccagagctccaccgatcagctggccagcagcatcacggcc
acggtccgggccgaggtccagcaccagatgcagatgatggtgggaaatctgcaggagtcc
atcctcagccacgtgcagcggatcgttaaaggggaggtgagtcaggccatgaaggagcag
caggcggtggtcacctccagcatcatgcaggccatgaggtccgcggccgggacccccgtc
cccacggcccacctggactaccagacccagcaggccagcatcctgcagttcctgcagcag
ggccagctcaaccaggccttccagcaggcgctgtcggcctccgatctcaacctggtcctg
tacgtgtgcgagaccatcgactcgcagcaggtcttcggtcagaccccctgccccctcagc
cagccggtcctgctctcgctcatccagcagctctcctccaacctgtccacccgctccgag
ctcaaaatcagctacctggaggacgcggtgatgaacctggaccacagcgaccccctgacc
agagaccacatgtcctccgtggtggtccaggtccgacccaagctcctggccttcctgcag
caggacccccacagtccgctctgcaagacggtgcgccgcctgatgatgatgctgcagggg
ctggtcagccactag
DBGET
integrated database retrieval system
