Austrofundulus limnaeus (annual killifish): 106520537
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Entry
106520537 CDS
T06063
Symbol
cnot3
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106520537 (cnot3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106520537 (cnot3)
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106520537 (cnot3)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106520537 (cnot3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5646
Motif
Other DBs
NCBI-GeneID:
106520537
NCBI-ProteinID:
XP_013868155
UniProt:
A0A2I4BK91
LinkDB
All DBs
Position
Unknown
AA seq
905 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEETGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIDELKRLIERHRFHI
RMLETILRMLDNDSVPVDAIQKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPAALVA
TSPSGQGNMEDDMYLHSSSTPTSTTSSSPIPPSPATCTAENSEDDKKRGRSTDSEVSQSP
VKNGAPSLQSSFSSSTTSGSSSSSSLVSMASVVGGILAVPTSSTLIGSFSSAVQQHQHQS
AQQQQQSQQSNQQQPPQTKPSIPSNNTPSPPSNPLLPTSTAPSLTIPSTSSLSAPNSHSQ
PISGPTSASSLGLGLDLRKGGITGTNSANQMPSLGLTGHTTPLNTMAGLISGSTSALYAH
AAASGGLGLSSTTQSSILTESSTSNPTSGSSGVTTNGAGSGRNLLGSSPVHNSLSGSILS
LVPGQGVAPATSQVPPTSASTTAGVVGLMVGNGGGVGVVGAVGINAAPARPPSGLKQNGS
TSYSAVVAESATESPLSTPNQSQNSQPSSLSSSTSQPMDNGPSLISSITLPPSSPSPSFS
DSTPSGGSLLNGPHSYPQASEGLEAPKGLSSLKVMAERAALGSGLDGEIPNLHVTDRGLN
DIFSSSSAAPGTPAAPQPSVSEVSIPPSLGVCPLGPTPLPKEQLYQQAMQDSAWNHMPHP
SDSERIRQYLMRNPCPTLPYHHQVPTHHSDTIEFYQRLSTETLFFIFYYLEGTKAQYLSA
KALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLE
DRDLQ
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaactacaaggtgaaatagatagatgtttgaaaaaagtagctgag
ggtgtagagcagtttgaagacatttggcaaaagcttcacaatgcagccaacgcgaaccag
aaggaaaaatatgaggctgacctcaagaaagagattaaaaaactacaacgattgagagat
cagattaaaacatgggtggcctcaaacgagatcaaagacaaaaggcagctagttgagaac
cgcaaacttatagagacgcaaatggaacggttcaaagtggtggagcgtgaaacaaaaaca
aaagcgtactctaaagaaggcttggggcttgctcagaaggtggatccagctcagagggaa
aaggaagaaacaggacagtggctaacgaataccatagacacactaaatatgcaggtggat
cagtttgagagtgaggtagaatctctttcagtccagacacgaaaaaagaaaggcgataag
gagaaacaagatcgcatcgatgagctcaagcggttgatcgagaggcatagattccacatt
cgcatgttggagacaattttacgaatgctggacaacgattctgtgccggtggatgcaatc
caaaagatcaaggatgacgtcgagtactacattgattcctctcaagacccggattttgag
gagaacgagttcctgtatgacgacttggacctggaagacatccctgcagcgttagttgca
acgtcgccatcaggtcagggcaacatggaagatgacatgtatcttcattcgagcagcact
cccacctccaccacatcttcttcacccatccctccatccccagccacttgcactgctgag
aactcagaggacgataagaaaaggggacggtcgacagacagtgaagttagtcagtcgcct
gtgaagaatggtgccccatccttacaatcttccttctcttcttccaccacctctgggtct
tcttcgtcctcttccctcgtgtccatggcgagcgttgtcggaggcattcttgccgttccc
acaagcagtactctcataggaagctttagcagcgcggtacagcaacatcagcatcagtct
gctcaacagcagcaacagtctcagcaatcaaaccaacagcagccacctcagactaaaccc
tccattccctcgaacaacacccccagcccgcccagcaaccctcttctcccaacatccacc
gccccttccttaaccatacccagcacatccagtttatcagctcccaactctcattctcag
cccatctctgggcccacctctgcatccagtttggggctggggctggatttaaggaaagga
ggcataacagggaccaacagtgccaaccaaatgccaagtttaggcttgactggccacacc
actcctttaaacacgatggcaggcctcatttcagggtccacatctgccctttatgctcac
gcagcagcttctggaggtttggggctgagcagcaccactcagtccagcattttaaccgag
agcagcacttccaaccccacctcaggatccagtggagtcaccaccaatggagcggggtca
gggcgtaatttgctaggttccagcccggtccacaattctctgagtgggagcattttgagt
ctggtccctgggcagggcgtggcccctgctacctctcaggtgcccccaacttctgccagc
accacagctggagtcgttggcctgatggttggcaatggaggaggcgtcggtgtggttgga
gcagtaggcattaatgctgctcctgctagaccaccaagtggactgaagcaaaatggaagc
acaagttacagtgctgtagtagcagagagcgccacagaatctcctcttagcacacccaac
cagtcacaaaacagccaaccctcatccctcagttcctcaaccagccaaccgatggacaac
ggccccagtttaatcagctctatcaccctgccccccagttctccatccccctcgttctca
gacagtacaccaagcggagggagtctcctgaacgggccccactcttatccacaggcatct
gagggcctcgaggctcctaaaggcctcagttccctgaaggtgatggctgagagagcggcg
ctcggatctggtctggacggagagattccaaaccttcatgtgacggacagaggtctgaac
gatatcttctccagttcatcagcagcgcctggcacccctgctgccccacagccatccgtg
tcggaggtcagcatccctccctcgcttggggtctgcccgctgggtccaacccctctcccc
aaagagcagctgtaccaacaggcgatgcaagattctgcatggaaccacatgcctcacccg
tctgactctgagaggatcaggcaatacctgatgaggaatccatgtcccacgttgccgtac
caccatcaggtaccaacccaccactctgacaccatcgagttctaccagagactgtccaca
gaaactctcttcttcatcttctactacctggagggcactaaggctcagtatctgtctgcc
aaggctttaaagaaacaatcgtggaggtttcacaccaagtacatgatgtggtttcagagg
cacgaggagcccaagactatcaccgatgagtttgaacagggcacttacatttactttgac
tatgagaaatggggccagaggaagaaggaggggttcaccttcgagtacaggtacctcgaa
gacagggacttgcagtga
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