Austrofundulus limnaeus (annual killifish): 106521088
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Entry
106521088 CDS
T06063
Symbol
shoc2
Name
(RefSeq) leucine-rich repeat protein SHOC-2
KO
K19613
leucine-rich repeat protein SHOC2
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
106521088 (shoc2)
SSDB
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Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_14
LRR_LRWD1
LRR_13
LRR_9
LRR_NLRC4
LRR_EndoS
Motif
Other DBs
NCBI-GeneID:
106521088
NCBI-ProteinID:
XP_013868956
UniProt:
A0A2I4BMI0
LinkDB
All DBs
Position
Unknown
AA seq
582 aa
AA seq
DB search
MSSNLGKEKDLKEKDPKGGPAGKEREKEAKALASLVKDGGKETKTKGKDAKEGKKDTSSS
TPGVAFSVDNTIKRPNPAQGARKKSSNAEVIKELNKCREETSVRLDLSKRSIHMLPTSIK
ELTQLVELYLYSNKLQSLPAEVGCLSGLVTLALSENSLTSLPDSLDSLKKLRMLDLRHNK
LREIPPVVYRLTSLTTLYLRFNRITTVEKDIRNLSKITMLSIRENKIKQLPAEIGELCSL
ITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPETIGNLASINRLGLRYNRLSAIP
RSLSKCRELEELNLENNNISVLPEGLLSSLVNLTSLTLARNCFQSYPVGGPSQFSTIYSL
NMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKISED
ICGLVSLEVLILSNNLLKKLPHGIGNLRKLRELDLEENKLECLPIEIAYLKDLQKLVLTN
NQLTTLPRGIGHLTNLTHLGLGENLLQQLPEEIGTLENLEELYLNDNPNLHSLPFELALC
SKLSIMSIENCPLTHLPPQIVAGGPSFIIQFLKMQGPYRAMV
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtaatttaggcaaagaaaaggatttaaaagaaaaggaccccaaaggtggtcca
gcaggtaaagaaagggaaaaggaggccaaggccttagccagtttagtcaaagacggtggc
aaagaaacaaagaccaaagggaaagatgccaaagaaggtaagaaagacacaagcagctca
acgccgggtgttgccttctctgttgacaatacaataaagcggccaaacccggcacaaggt
gcacgcaagaaatccagcaatgcagaagttatcaaagagctcaataagtgtcgggaggag
acttcagtgagactggacctatctaaacgttccattcacatgctgcccacctccattaaa
gagttgactcagttggttgaactttacttgtatagcaacaaactacagagcctaccagct
gaggtgggttgcctatcaggcttggtcactttagctctcagtgagaactccttgaccagt
ttgcctgattccttggactccctgaagaagcttcgaatgcttgacctccggcacaacaag
ctcagagagatcccacctgttgtctatcggctgacgtctctgaccacgctgtacctgcgc
ttcaaccgcatcacgacagtagagaaggacatccgaaacttgtctaagatcaccatgctc
agtatccgggagaacaagattaagcagctgcctgcagagataggggagctatgcagcctc
attactctggatgtcgcccataaccagttggaacatctaccaaaggagattggaaattgc
acacaaataaccaaccttgacttgcagcacaatgagctcctggacctcccagagactatt
ggcaatttggcaagcataaatcgtttaggtctgcgatataatcgattgtcggcaatcccc
agatcattatccaaatgtcgagaactagaggagctaaaccttgaaaataacaacatttca
gtgttgccagaaggcctgctgtcgagtttggtgaacctgacgagtctaacactggcgagg
aactgcttccagtcgtaccctgtgggtgggccttctcagttctccaccatttactccctc
aacatggaacacaaccgcatcaacaagatcccatttggtatcttctccagggccaaagtg
ttgagcaagcttaacatgaaggacaaccagttaacatccctgccattggattttggcaca
tggactagcatggttgaactgaacctggccactaatcagctgacaaagatctcagaagac
atctgtggtcttgtctctttagaggtattaatattgtccaataaccttctgaaaaagtta
ccgcatggtattgggaatttgagaaagttacgagagctcgacttggaggaaaataagttg
gaatgtctacccattgaaatcgcttacctgaaagatttacagaaattggtgttgacaaat
aatcagttgactacgttacccagaggcatcggccacctcaccaacctgacccatctgggt
ttgggtgagaacctgctgcaacagcttccagaggagattggcacactggagaacttggag
gaactgtacctgaacgacaaccccaatctgcacagcctcccgtttgagctggccctctgc
agcaagctgtccatcatgagcattgagaactgtcccctcacccacctgccaccccagatt
gtcgctggaggcccctctttcatcatccagttcctcaagatgcagggaccgtaccgtgcc
atggtctga
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