Austrofundulus limnaeus (annual killifish): 106522253
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Entry
106522253 CDS
T06063
Name
(RefSeq) collagen alpha-1(XVIII) chain-like
KO
K06823
collagen type XVIII alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
alim04147
]
106522253
00535 Proteoglycans [BR:
alim00535
]
106522253
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106522253
Exosome [BR:
alim04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
106522253
Proteoglycans [BR:
alim00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
106522253
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106522253
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Fz
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
106522253
NCBI-ProteinID:
XP_013870648
UniProt:
A0A2I4BSF8
LinkDB
All DBs
Position
Unknown
AA seq
1647 aa
AA seq
DB search
MGSDKSESESDLGSGLLFSSESDFIAGNEKSLGSGKEAGTSIHYGWLDRGASAGSMKNEQ
KRKFTEKTSPNRVDQDQNLDSAAKTPNNQNNINNNTRRNDFNLTSYKTPEDFIPLNLNGS
XAQAAEVSQSNQQLKDSQMPNEDILPNMLKTEQVPVLNQTLSITETQTHNLFIAQSKTHN
NRPESNSAPTETQLQISSETLREKALTGQTAEVLAENHTEVKSKPVIESSQCLLIDTALP
FCFSMEGFAVPNYLNQSSVEEVRTLLNEWVWLLQSRCHPSLERFFCLLLVPKCGSGAAPP
VLPCQSFCEVLRDSCWTLLDEGHLPVECHSLPDEEDEGYQCLSXSNRKEDNSVSLLELIG
DPPPDEIPKVEGPNNNPGYLFGPDTNTGQLAHAHFPGSFYRNFALIFNMKPTSDNGGVLF
SITDPSQEIIHVGVKLSAVRGAKQDIIFYYTEPGSEQSKEAARFQVPSMTNMWNWFAISV
KDDKVMLYLNCDGETEVKSIERSTDNLDLELAAGVFVGRTGGSKPDKFEGVISELRVVGD
ARPVERLCEEDEDDSDVASGEGSGNEETRLSNHYRDKPRYTTSSPSFPPIPQPPLRIKGE
DASIRETAGDSEHFLVSAESRRLGAAGAVATKGAKGDKGDKGEKGDRGPIGPKGESGSAS
RSQGANRGDKGEPGEKGSKGNAGFGYQGKKGEPGLPGPPGPQGPPGPATEYSVGSDGSVA
SKVPGPQGPPGPPGPQGPPGEDGEPGDPGEDGKTGPQGPPGFPGTPGDPGSKGEKGDRGE
GQPGPRGPPGLPGPPGPGFRSTFEDMEASGFSDLEKVQGPPGPPGPPGPPGPPGSPVSGP
ALSSGAFGPPGKDGAPGQPGLPGLPGADGLPGAPGPRGEKGDSGDLGLPGAIGEKGAPGQ
PGLPGPPGETGLAGLPGPMGPIGRPGPPGPPGPGYRVGFVTWRGPVEVPPVDLQASEDQK
EFRVRQVYQDTQVSLVCLVYKVQRGIRVRLEKMDYXAWTASLDPRVKRVTEGTEERGVSR
VEMELDHQVYQVHLDHQDKSSTSHLTTFDNFAGSVGAQGGPGSPGRAGFPGPVGPKGDRG
DPGPPGYGLKGEKGEAGFIIGPDGNPLYLGGLTGPKGERGPPGPVGPPGLQGPPGNKGEF
GMPGRPGRPGVNGYKGEKGEPGGGSGYGYPGFPGPPGPPGPPGPPGPALPLDRFNRYDET
PRTSQAIKGEKGERGERGIPGIPGTASNFDIYAFKNELKGERGDSGAKGEKGEPGAGYYD
PHFGGLQGPPGPPGSPGLPGPKGDSIMGPPGPQGPSGPPGVGYDGRPGPQGPPGPPGPPG
SSTFSGSYQPNYPVSVPGPPGPPGPPGSPGHSSGVTVLRSYDTMIATARQQQEGSLIYIL
DNADLYLRVRDGLRQVMLGEYSSLFGGLGNEVAEVQPPPVILYPHSPDRPHNNGAGHYSE
SGSVIRPIEPPQQHPNPPVPGPAVRVETSESGLHLVALNTPQTGNMRGIRGADFMCFQQA
RAVGLKGTFRAFLSSKLQDLYTIVRRQDRSSFPIVNLKNQKLFDSWESIFSDDSSRMREN
VPIYSFDGRDILRDSAWPEKMIWHGSSSKGHRQMDHYCETWRAGDRAVTGLASSLQSGHL
LQQTPSSCSGSYIVLCIENAFMSPSKK
NT seq
4944 nt
NT seq
+upstream
nt +downstream
nt
atgggttctgataaatcggagtctgaatcagacctgggttctggtcttttgttcagctcc
gaatcagattttatagcaggaaatgagaaaagtttgggatctggaaaagaagcagggact
tccattcattacggatggttagatagaggagccagtgcagggtctatgaagaatgagcaa
aaacggaagtttacagagaaaacgtctcctaatagagtagatcaggatcaaaatctggat
tctgctgctaaaacacccaacaatcagaacaacataaacaataacactcgcaggaatgat
ttcaatctgacatcttataaaactccagaagacttcatacctttaaatttaaacggcagt
yttgcccaggctgctgaagtgtctcagagcaatcagcagctaaaagactctcagatgcct
aatgaggatattttacctaacatgctaaagactgagcaagttccagttcttaaccagacc
ctatctataacagaaactcaaacccacaatctgtttattgcccaatccaaaacccataat
aacagaccagaatctaactccgcacccacagaaacccaacttcaaatatctagtgaaacg
ttaagagagaaagctttaactggtcaaactgcagaggtgttggctgaaaaccacacagaa
gttaaatccaaaccagttattgagtcatcccaatgcttactcatagatactgctcttcct
ttctgcttctcgatggaggggtttgctgttcccaattatctcaaccagagcagtgtggag
gaagtccgaacacttttgaatgaatgggtatggcttctacagtctcgctgccatcctagc
ttggagcgttttttctgccttctcttggtaccaaagtgtggctctggggcagcgccacct
gtgttgccctgccagagtttctgcgaggtgttgcgagacagttgctggacgctgctggat
gagggacacctccctgtggagtgccactctctaccagatgaggaggacgaagggtatcag
tgcttgtcarttagtaaccggaaagaagacaacagcgtctcactgttggagctgattgga
gatcctcctccagatgaaatccccaaggttgaaggaccgaacaacaaccccggctacctc
tttggtccagacaccaacacgggtcaactggctcacgcccacttcccaggctcattctac
agaaactttgccctcatcttcaacatgaaacccacgtctgacaacggtggagtcctcttc
tccatcacagatccctcacaggagatcattcatgtgggggttaaactttcagctgtgcgg
ggagccaaacaggacattattttttattacactgaaccgggctcagagcagtccaaagaa
gcagccaggttccaagtgccctccatgacgaacatgtggaactggtttgctatttctgtg
aaggacgacaaggtgatgttgtaccttaactgtgatggagaaactgaagtgaaaagcatt
gagaggtccacggataatctggatctggagcttgctgctggggtctttgttggtcggact
ggagggtctaaacctgacaagtttgagggagtgatcagtgagctgagggtggtgggagac
gcccgccctgtcgagaggctctgtgaggaagacgaagatgactcagatgtggcttcagga
gaaggaagtggcaatgaagaaaccagactctcaaaccattatagggacaagcccagatac
acgacttcgtctccgtcytttccgcccatcccgcagccgcctctgaggataaaaggagag
gatgccagcatcagagagactgctggagactcggagcactttttagtttcagctgaatcc
agacgacttggtgcagcaggtgcagttgctacaaaaggagcgaagggcgacaagggtgac
aaaggagagaaaggagaccgaggtccaattggaccgaagggagaatcgggttctgcctcc
cgttcacagggggcaaaccgtggagacaagggagaacctggtgaaaaagggtcaaagggc
aacgcagggtttggatatcagggcaaaaagggcgagcctggccttccaggaccccctggg
ccccagggccccccaggacctgcgactgagtattcagttggaagtgatggatcggttgct
tcaaaagtgcctggacctcaaggaccacctggaccaccaggcccccagggacctcctgga
gaagatggagaaccaggggatcctggtgaggatggaaaaacaggccctcagggaccacca
gggttcccaggaaccccaggtgaccctggatccaaaggagaaaagggtgaccgtggagag
ggtcaaccaggtcccagaggacccccaggacttccaggtcctccaggaccaggattcaga
tctacttttgaggacatggaggcctctggattctcagatctggaaaaggttcagggacct
cccggtccaccaggcccccctggaccaccaggtcctcctgggtcccctgtatcaggccca
gcattgagttctggagcatttgggcctccaggcaaggatggagcacctggtcaacccggc
ttaccgggtctaccgggtgctgatggcctcccgggagcacctgggcccaggggagaaaag
ggtgattcaggggatctgggacttccaggagcaataggagaaaagggagctcctggtcag
cctggattaccaggaccaccaggtgagaccggactggctggtcttccaggacccatggga
ccaattgggcgtcctggaccaccgggtcccccaggaccaggttatcgtgttggatttgtg
acatggaggggtccagtggaagtcccaccagtggacttacaggcatcagaggaccagaag
gaattcagggtccgccaggtttaccaggacacccaggtaagcctggtttgcctggtwtac
aaggtccaaagggggatcagggtccgtctggaaaagatggactacsgggcctggacggct
tccctggacccccgggtcaaaagggtgacagaggggacagaggagagaggggtgagccgg
gtcgagatggaactggatcaccaggtctaccaggtccacctggaccaccaggacaaatca
tctaccagccatctgacaacgtttgataactttgctggcagcgtcggagcccagggtggg
cctggttcacccggccgagctggatttcctggtcctgttggaccgaaaggtgacagaggt
gaccctggtccaccaggttatggactgaagggtgaaaaaggggaggccgggtttataatt
ggacctgatgggaatccgttgtatctgggaggactaactggtcctaagggagagcgagga
cctcctggacctgttggaccaccaggtttacaagggcctcctggaaataagggtgaattt
ggaatgcctggaagacctggtcgtccaggtgtgaacggatacaagggtgaaaaaggagag
ccaggaggaggytcaggttatggttatccaggatttccaggaccaccaggaccaccaggg
ccacctggaccccctggaccagctcttcctttagatcgctttaatcgctacgatgaaaca
cccaggacttctcaagcaatcaaaggagaaaaaggagagcgaggtgaacgtggaattcct
gggatccctggaactgcctcgaattttgatatttatgcttttaagaatgagctgaaagga
gaacgtggggactctggtgccaagggagaaaagggagagcctggtgctggatattatgac
ccacattttggaggattgcagggcccaccaggacctccgggtagtcctggcctgccgggt
ccaaaaggagactctataatgggcccacctggaccccagggaccttcagggccaccaggg
gttggttatgatggacgtcctggtcctcaaggaccacctggtccacctggaccccctggg
tcttccacattttctggatcatatcagcctaattatcccgtcagcgtccctggacctcca
ggcccacctggtccacctggaagtcctggtcactcatctggagtcacagttttgagatct
tacgacacgatgattgctacagccaggcagcagcaggaaggcagtctgatatacatctta
gacaacgcagacctttatctgagagtgcgtgatggactgcgacaagtcatgcttggagag
tacagttccttatttggaggtttgggcaacgaggtggcagaagtccagcctccacctgtg
attttgtacccccacagcccagaccgacctcacaacaacggagcaggccactactcagag
agcggttctgtcatccgacccattgagcccccccagcagcatcccaacccccctgtgcct
ggtcctgctgtccgcgttgagacttcagagtcaggactgcacctggtggccttgaacaca
cctcagacgggcaacatgcgagggattcgtggagcggacttcatgtgcttccagcaggcc
cgtgctgtgggactgaagggaaccttcagagccttcctgtcctccaagctccaggacctc
tacaccatcgtccgcaggcaggaccggagcagcttccccatcgtcaacctcaagaaccaa
aagctgtttgacagctgggagtcgatcttcagtgaygacagcagcagaatgagagaaaat
gtaccgatttactccttcgatggcagagacatcctcagggacagcgcgtggccggagaaa
atgatctggcacgggtcgagcagtaagggccatcggcaaatggaccactactgtgaaacg
tggcgggcaggcgaccgcgccgtgaccggtttggcgtcctcgctgcagagcggccacctc
ctgcagcagacccccagcagctgctccggctcttacatcgtcctctgcatcgagaacgcc
ttcatgtccccttccaaaaaataa
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integrated database retrieval system
