Austrofundulus limnaeus (annual killifish): 106522593
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Entry
106522593 CDS
T06063
Symbol
cirh1a
Name
(RefSeq) cirhin
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
106522593 (cirh1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
alim03009
]
106522593 (cirh1a)
Ribosome biogenesis [BR:
alim03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
106522593 (cirh1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_WDR5
WD40
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_WDR3_2nd
Beta-prop_Aladin
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
Beta-prop_NUP159_NUP214
Beta-prop_HPS5
EIF3I
Beta-prop_TEP1_2nd
WD40_Gbeta
Beta-prop_SCAP
Beta-prop_IP5PC_F
Beta-prop_WDR75_1st
Beta-prop_VPS8
Lactonase
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
106522593
NCBI-ProteinID:
XP_013871116
UniProt:
A0A2I4BTN6
LinkDB
All DBs
Position
Unknown
AA seq
685 aa
AA seq
DB search
MGEFKVHRVRFFDYMPSAIRALAWCRHTQRVAVGRADGSVEIFNFSDNYFQEKVIPGRDG
RTVEALCWAGPRLFSAGLDGEITEYDLENLRPRYSLEAYGGPVWTISCNSQETLLSAGFE
DGTVKLFEILEGKVQFQRNLDRQKGRIVSLSWHPSGSQMAAGMMDMIRVFDAQTGHATHR
LLVERGAGASKSQEVVVWSVVFLSNGTIISGDSAGKVQVWDSFTGTLLRTHLVTKWDVLV
LSVSPDESSVIAGTSEGTVIQFQFVSSTVEQQEQQWVRTRTFKNHSHDVRALVHTDTAVV
SGGVDTQLVVRPLLDKVEKNTQESALRKIIFPHRNLVSCAKKAGLLLFQFPDHLEVWRLG
DSDGKGKAGDSLPLKRKPEKMIQLNRKGQDHICCSALSPCGGWLAYSTVSAVRLYRLQLN
TNNISINKVSKLPKELQSVHQLCFSCDSSKLFASSSLSSVVVVGLSQLECKHLETLKHKS
GSRQPVHLLCPSEDGKWLVTSNTDREVHVFNLHKMKLHCSVPVYGSCPTAVSVHPSGSSL
VCVHADQQILEFSLKQKEYTEWSRTLQRLGLHPLWLQRDTPITTVTYDPRNPAHLALHDA
FMFCIIDQTLPLPEAKTNLYNQQVLRSLPQDQRSRVSHAFKICKNFQNLLGVDLLEDHSL
VVVERPLQDILTRLPAPVRCKKFAT
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgggggagtttaaggtgcaccgggtccggttctttgactacatgcccagtgccatccgg
gccctggcgtggtgccgacacacgcagcgcgtggccgtgggccgggccgacggctccgtg
gagatctttaacttctctgacaactacttccaggagaaggtgatcccggggcgggacgga
cggaccgtggaggctctgtgctgggcgggtccacgcctgttcagcgccggtttggatgga
gagatcacggagtacgacctggagaacctgaggccccgctacagcctggaggcctacgga
gggcccgtttggaccatcagctgcaactctcaggagaccctgctgtcggcgggcttcgag
gacggaaccgtcaagctctttgagatcctggaggggaaggtccagttccagaggaacctg
gaccgacagaaaggtcggatcgtctctctctcctggcacccgtcggggtctcagatggca
gcagggatgatggacatgatccgagtctttgacgcacaaacaggccacgccacacaccgc
ctgctggtggagcgaggtgcgggcgcctcgaagtcccaggaagtggtggtctggagcgtg
gtcttcctgtccaacggcaccatcatcagcggggactctgcagggaaggtccaggtctgg
gacagcttcacggggactctgctcaggactcacctggtcaccaagtgggacgtcctggtt
ctgtccgtctcaccggatgagagcagcgtcatcgctgggacgtctgagggaaccgtgatc
cagtttcagttcgtctcctccaccgtggagcagcaggagcagcagtgggtcagaaccaga
acctttaaaaaccacagccacgacgtgagggcgctcgttcacaccgacaccgccgtggtc
tctggaggagtggacacccagctggtggtgcgccccctgctggacaaagtggagaagaac
acccaggagtctgcgctgcgtaaaatcatttttcctcacagaaatcttgttagttgtgcg
aagaaagcaggactgcttctgttccagtttccagatcatttagaggtgtggaggcttgga
gacagtgatggaaaagggaaggctggtgacagtctgcctctgaagaggaaacctgagaaa
atgatccagctcaacaggaagggacaggatcacatctgctgcagcgccttgtctccgtgt
ggaggatggttagcgtactccactgtctcggctgttcgtctctacagactgcagctgaac
accaacaacatcagcatcaacaaggtgtccaaactgcctaaagaacttcagtcggtccat
cagctctgcttctcctgtgactcctcaaagctgttcgcctcgtccagcctgtcctctgtg
gtggtggtgggtctcagccagctggagtgtaaacacctggagaccctcaaacacaagtca
ggctccaggcagccggtccacctgctgtgtcccagtgaggacgggaagtggttggtgacg
tccaacacagaccgagaggtccacgtgttcaacctgcacaagatgaagctccactgttcg
gttccggtgtacggttcctgtcccacggcggtgtcggtccacccgtcgggcagcagcctg
gtctgtgtccacgctgaccagcagatcctggagttctccctgaagcagaaggagtacacg
gagtggagccggactctgcagagactggggctccaccccctctggctgcagagggacacg
cccatcaccactgtgacctatgaccccaggaacccggcccacctggccctgcacgacgcc
ttcatgttctgcatcatagaccagactctgccacttcctgaagccaagacgaacctttac
aaccagcaggtcctcaggagccttcctcaggaccagaggagcagagtcagccacgccttc
aagatctgcaagaacttccagaacctcctgggtgtggacctgctggaggaccactctctg
gtggtggtggagcgccccctgcaggacatcctgacccggctgccggctccggtccgctgc
aagaagttcgccacgtaa
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