Austrofundulus limnaeus (annual killifish): 106523784
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Entry
106523784 CDS
T06063
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
alim
Austrofundulus limnaeus (annual killifish)
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
alim04131
]
106523784 (vps13a)
Membrane trafficking [BR:
alim04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
106523784 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
106523784
NCBI-ProteinID:
XP_013872786
UniProt:
A0A2I4BYG7
LinkDB
All DBs
Position
Unknown
AA seq
3279 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAVLKNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEERQLQEARKRELERIEE
TKLKAAEQENPKLEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDVTNSNCPLSFGVSLQ
NLSLQTSDKNWKPSLLDENSRLFFKLVRLDNLFAYWNVNSALFSNHDAEEALRCLQSSMD
IHRSVPASHDFIFRPISADAKLRMNPRSDVDFSSPKVDLTVHLSEVAIELNKPQYISILE
LLGSVDMMSRNLPYRKYRPGVHVHKNARIWWXYVIKGILEVDVKPRLHMWSWKCIHQHRQ
RVKCYKDFYKTKITSKKPSDELLKHLEETEKTLDIFNITLARQQAEVEASKAGLRIYRPG
LKMEEEQSQGWISWMWNWGGEAETQTKETKPGSFDEFLTPAEKAKLYTAIGYSETAANPN
LPKNFEDMKVNFHMERLIVSIKETKDKDEIIKLTVGELKSTLAQRPGAQAIRITAQLSLF
EVTGLAMNRPAPTLLSSRKAATGAGTPLLCILFETNPLDGTANQRLHVESQPLEIIYDAI
TVNRMAVFFRLPDDLQLDELTNATLMKLEQFRDRTSTGLMYVIETQKVLDLKLNLMASYV
IIPQTGFYNGTQNILLLDLGHFKMSSQSKKNLPQLSACSSNLEDLMSRAYDRFDVQLSSL
QFLYSKPDGDWKQARKQKKSPLHILEPVDLKVVFSRAMVVTDTRMAKYEMSGELPLLSLR
ISDTKLRSVLELVDSIPLPESKPARSTPASNQKSRQSFTPQLTPRKRLNLADQRSSVIFE
SCDTLSISSLGSEEDLFYDAPSSPIGDKPFFADNAMPLRYGDLNKKKSLLKDPQKNMIDL
NMKFEINELSVQLCRMSGGQEVTVLHLDIEGLGTELKLCTFNMVSNIYLREICLKCPEYM
DSEDKQVQLITTLDNSEVDLLTLEYTKADKNGPEFKTQHNNTEQLIKVTFSSLDVHLHTE
ALLNTMNFLNNLLPPPAKKEGGGEELPTIPEEEEEEGEEVKEEGKKEEAAVTRKKSLKKS
KYADVVNLHIRADLRCLKVFIRGQKARVSEIGIEGLVSEVLMRKKEMKILANLKNIVILD
CNSDAIYKKAVSIDDKEVFSFRMTNYTGATEGDAYLDMSKVDTCVSLSVGCIKVIFLNKF
VSSILAFINNFQEAKDALAEVTVQAAEKAASGVKELAERSSRIALDVHFNAPVIFLPQSS
TSSNVIVADLGQLTVKNCFAMQPCKSDAKIPPVVDKMTVKLTDLKMYRAKYVNGGFKGEM
QVLKPVSLYLEIQRNLSSNWYHSIPDIEITAHLKPMSLILCQDDMIVVLRTLSENLSEKS
DAVQPPATLPIPDRSSDSVSNKESQNSGASGPASSNTVVTAAVVETQKRIKLKTTLKLDF
KFDSMTVVLYSPNENVVQLLDLHDEQLKLAEFTLGTISTSVYMYSDSSMKASVRLSMCLL
DDKRPKIKMVTPRMMAMRPGAEQNTMVEVNYRQGHEGTVLDTLVQDVYLCASMEFLLTVA
DIFLKATQQGFALGPQLKNNTTGEKKNINSSVTSKDSSTAAAPVSKTEMNXVVRNPEIVF
VADLTRADAPALVMTTQCELLMKSSAEGSMMNAVIKDLKVMACPFLKEKRKNNVTTVLQP
CQVFFNSTQSPTTPQTMEVSINSLLLKVSPVIINTVITIQSALTPTAETPQEQDSPVPVD
LWEKRGWKELKFWFLEEEGDEDTKSLTPLIPQGESLKVTIKSICLTLEAGVGHRTVPMLL
AKSSFHGDVKNWSTLINLHSELNLEVHYYNEMLGVWEPLVEPLEDETREGFRPWALELKM
KKKPVTQCMSDEIDGNIPDYKTVIFIRSKDQLNITLSKCGLTMLSNLGTAFAEAAKQTTE
CSQKDEAPFVIKNRLGLPVSVRYSEMFSPINKEHTNNHTVKLQGGETFEMDYSSKTDSDQ
FSAMISLSEKDYYLQPTPEGHTSASVIPLIKVGRGLYSVMHLDSGVTRFLVCQVSSMEGS
KYIKIRSPFQIMNHFLTPFKVLVGSTCLGVAEPNEEFCVPLDSYRSELSLQPLTDDGADD
QQFEMSEGFSYEYVCIQQPDVGNHHTHLQQTCRRRGDQSGGMTINIVPLKETVTFKHPEG
VVSSFDVPFVFHLWPPVLLRNLLPHPIAFKLKENGVSAPEVTLNPGHSAQLHTAVINQSK
LDLRLVDYLAQDWSSEYSLQKDQDEIAFIVFKSLRVDDEDDGEGTERNRAELDIAVHVKY
DPGQTVIAIHSPYWMVNKTGRLLQYKADDIHRKHPLDYDMPLLFSFKPRNFLRNNKVRLM
ISDSDLSDDFSLDTVGSHGDVKCKGRYKDYLVGVKIEASSFSLTRIVTFVPFYTLVNRTK
HKVFICEEGQESWTEAEPEQSAVPFWPENDTKRLKIKVEGCLAPPQTIDFTRPENCLLLH
LDKSVGGIIVDVNLSEHSATIRFSEYHDGAAPFLIINHTRDHPLQFNQSARKEVTWVAEE
LLDFSFSSEEDSSEVEAEIEELEAGKAVYYTWTKPSGSRELSWKCGKYSGKLKSEEDLRE
DMNKEGKLFVISFFEGLQRVVLFTEDQQIYKVLCENEKVQRAEQEIILSLQNVGVSLVNN
TNSQEVSYIGITSSEVVWESKPKKKNRWKTLSSKETDMFEDKFKEYIESGPTDNSTVQLE
NDFQVLFTPSGTNMQMLQPVEVPLRRHFMPGVRVEYSVSPRQKTYRVQIHRIQIQNQLPG
AIFPYVFYPVKLPKSITMDSEPKPLTDISIVTRAAGHSDISRIKYFKVLIQEMNLKLDLG
FLYAILDFFTPENAGIMTSEQEVEQFQKDVEYIKTQLNHVSTADTSPISLYEYFHISPIK
LHLSFSLSTGGEDGLKEKRETELIPVQSLNLLLKSIGATLTDVQDVVFKLAFFELTFQFC
TTQQLQWEVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGP
EEFVEGMALGVKALVGGAVGGLAGAASRITGAMAKGVAAITMDEEYQQKRREAMNKQPSG
LRDGLTRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIID
MVNNTFQGIKRVAETSQDVISLRPPRFIHDDGVIRPYKEREGIGSQMLQKIENGRFAKYR
YFAHAKVNESDFFMITKRGIFFVTKGTFGQLTCEWQYLFEEFTKDPIIVDHRRLRIEAKE
RVKSVFHAKEFGKIINFETADIAKWVLDKLEDARESLSK
NT seq
9840 nt
NT seq
+upstream
nt +downstream
nt
atggttttcgaaagtgtggtagtggacgttttaaaccggtttttaggggattacgttgtc
aacctcgatagctcacagctgaagcttggaatatggggaggtgatgccgttcttaaaaat
cttgaaataaaggaaaatgccttgagtcagcttgatattccctttaaagtcagagctggt
cacataggacgcctggagctgaagatcccatggaagaatctctacacccagtcagtggag
gccacactagatggtgtctatctccttatagttcccacagcaagtataaagtacgatgca
gaaaaagaggagaggcagctacaggaggctcgtaaaagggaactcgaacgaatcgaagag
acgaagctgaaggctgcagagcaagaaaacccgaagctggagaagcaggacacttttgta
gagaagcttgtgactcaggttatcaaaaacctgcaggtcaagatctccaacatccatgtg
cgctatgaagatgatgttaccaattcaaactgccctttgtcatttggggtttcacttcaa
aacctcagcctccagacatcagataaaaactggaagcccagtctcttggatgaaaattcc
aggcttttctttaagttggttcgactggacaacttgtttgcctactggaacgtcaactcg
gcacttttctccaatcacgatgctgaagaggccttacgttgtcttcagagcagcatggat
attcaccgttctgttcctgccagccatgacttcatttttcgtcccatatcagcggatgct
aaattgcggatgaatcccaggtcagatgtggatttttcttctccaaaagtggatttgaca
gtccatctcagtgaggtggctattgagctcaacaagcctcagtatattagcatcttggag
ctgctgggctcggtggatatgatgtcacgaaacctgccatacaggaagtacagacctggg
gtgcacgttcacaagaatgctcgcatatggtggamgtacgtgattaaggggatcctggag
gtggacgtgaagccacgtctccacatgtggtcgtggaaatgcattcaccagcacaggcag
agggtgaagtgttacaaagacttctacaagacaaagatcaccagcaagaagcccagcgat
gagcttctcaagcacctagaggagactgagaagaccttggatatttttaacatcacactg
gctagacaacaggctgaagtggaggcaagcaaggcagggctgcgtatttatcgtccaggg
ttgaagatggaggaagagcagtctcagggttggatcagctggatgtggaactggggagga
gaagctgagacacaaacaaaagagaccaaacctggaagttttgatgagtttttaacccct
gctgagaaagccaaactctacactgccattggatacagtgaaactgctgctaatcccaac
ttgccaaaaaattttgaagacatgaaggttaatttccacatggagcggctgattgtgtcc
atcaaagaaacgaaggacaaagatgagatcatcaagctgacggtgggggagctcaagtca
acactggcacagaggcctggcgctcaagccatcagaatcacagcacaactcagtttgttt
gaagtcaccggtttggccatgaacaggcccgcaccaaccctcctttcatcgaggaaggca
gccacaggagcaggaacgccgctgctctgcatcctgtttgaaaccaacccgctggatggg
actgcaaaccagcggctccacgttgaatcccagccactggaaatcatctacgatgcaatw
acagtgaataggatggcagtgttcttcaggctgcctgacgacctgcagctcgatgagctc
accaatgcgacyctgatgaaactggagcagttcagagaccgcacatccaccggtttgatg
tatgtgatcgaaacacagaaagttctggacttgaagctgaacttgatggcctcgtacgtc
atcatcccccagaccggcttttacaacgggactcagaacatcttgttgttggatctcggt
catttcaagatgtccagtcaaagcaagaaaaatctgccgcagctgtcagcgtgttccagc
aaccttgaagacctcatgtccagagcgtacgaccgcttcgatgtgcagcttagcagctta
cagttcctctacagcaaaccagatggtgactggaaacaagctcgcaaacagaagaagtca
ccacttcacatcctggagcctgtggatctgaaagtagttttcagcagggcgatggttgtt
acagacacccgcatggcaaaatatgagatgtctggagaacttcctctgctgtctcttcga
atttctgatactaaacttcgaagtgttctggagctggtcgacagtatcccactgcctgag
agcaaacctgcacgcagcactcctgcttcaaatcaaaaatccaggcagtcgttcacccct
cagctcactcccagaaaacgtctgaacttggccgaccagcgctcgtctgtcatttttgag
tcatgtgacacgctcagcatctcctcactgggatcagaggaagatttgttctacgacgct
cccagttctcccatcggagataagccgttcttcgcagacaatgccatgcctctgcgctac
ggagacttaaacaaaaaaaagagcctcctcaaagatcctcagaagaacatgattgacttg
aacatgaagtttgagatcaatgagttgtctgttcagttgtgtcgaatgtctggaggtcaa
gaggtcacggtgctccacctggatatagagggactcggcactgaactaaagttgtgcacc
tttaacatggtctccaacatctacctgcgagaaatctgcctgaagtgtcctgaatacatg
gattctgaggataagcaagttcagctgatcaccactttagataattcagaagttgacctg
cttaccttagagtatactaaggctgataagaatggtcctgagttcaaaacacaacataac
aatacagagcagctcatcaaggtgaccttttcgtccctggatgttcatctgcatacagag
gctctcctcaatactatgaacttcctcaataatctccttcctccacctgccaagaaggaa
gggggaggtgaggagctccccaccatccccgaggaggaggaggaggagggagaggaagtg
aaggaggaggggaagaaggaggaagctgctgtcaccaggaaaaagagtttaaagaagtca
aagtatgcagatgtggtgaatcttcatatcagagccgatctgcgctgcttgaaagtgttc
attcgaggacagaaagccagagtctctgagattggtattgaaggtctggtttctgaggtc
ttgatgaggaagaaggagatgaagatcctagccaacctgaagaacattgtgatcctggac
tgcaacagtgatgccatttacaagaaggctgtctctattgatgacaaggaagtattttcc
ttccggatgacaaactatactggtgcaacagaaggagatgcatatctagacatgtctaaa
gttgacacctgcgtctcactgtcggtggggtgcattaaggtgatcttcctcaacaagttt
gtgtcctccatactggcatttatcaataattttcaggaggcaaaagacgccctggctgag
gtgacagtccaggctgcagaaaaggcagcctcaggtgtgaaggaactggccgagcggagc
tctcgaatcgcccttgacgtccacttcaatgcaccagttatcttcctcccccagtcgtcc
acttcgtcaaacgtcattgtagctgatcttggtcagctgactgtcaagaattgtttcgcc
atgcagccttgtaaaagtgatgctaaaatcccacctgttgtggataaaatgactgtgaaa
cttaccgatctcaagatgtacagagccaagtatgtcaatgggggttttaagggagagatg
caagttttgaagccggttagcctgtatttggaaatacagagaaatctgtcatccaactgg
taccacagcatccctgacatagagatcactgctcatctaaagccaatgagtctgatcctc
tgccaggatgacatgatcgttgtcctgagaactctgagcgagaacctctcagagaaatct
gatgctgttcagcctccagctactctgcccatccctgatcgctcctctgactctgtatcc
aacaaagagtcccagaactcaggagcctcaggacctgctagcagtaacaccgtggtgaca
gctgctgtggtggagactcagaagcgcatcaagttaaagacgacactcaagctggacttc
aagtttgactccatgacggtggtcctgtacagccctaatgagaatgtggtacaactctta
gaccttcacgatgagcagctgaagctggcagaatttactctgggtaccatctccacctct
gtctacatgtactctgacagctccatgaaggcctcggtccgactctctatgtgcctcctg
gatgacaagagaccaaaaataaagatggtcaccccaaggatgatggcaatgcggccaggt
gcagagcagaacacgatggtggaggtgaactaccggcaggggcacgaaggcaccgtttta
gacacactggtgcaggatgtgtacctgtgtgccagcatggagttcctgctcaccgtggct
gacatctttcttaaagccacccagcagggctttgctctgggtccacaacttaaaaacaac
acaactggagagaaaaagaacatcaactcctctgttacctctaaagactccagtacagct
gcagctccggtgtcaaagaccgagatgaacrttgtggtgcggaaccccgaaattgtgttt
gtggctgatctgactcgtgctgatgcaccagccctggtgatgaccacacagtgtgagctg
ctaatgaaaagtagtgccgaggggtcaatgatgaatgctgtcatcaaggatctaaaggtt
atggcatgccccttcttaaaagagaagaggaaaaacaatgtcaccaccgtcctgcagcca
tgtcaggtgttctttaacagtactcagtccccaactacccctcagactatggaggtctcc
atcaactctctcttgttgaaggtatctcctgtcatcatcaacactgtaattaccatccag
tcagctctgacccccacagcggagactcctcaggagcaggacagtcctgttcctgtggat
ctttgggaaaaacgaggctggaaagaacttaaattttggttcttagaagaggagggggat
gaagacacaaagtcattgaccccactgattccccagggagagtcgttaaaggtcacaatt
aaatcaatctgtctgactctggaggctggcgtgggacatcgcacygtccccatgcttctg
gccaagtcctcttttcatggagatgtgaaaaactggtccacactcattaacttacacagt
gaactcaacctggaggtgcattattacaacgagatgctgggagtgtgggagccactggtg
gagcctttagaagatgagaccagagaaggtttcagaccgtgggcactggagttaaagatg
aaaaagaagccagtgactcagtgtatgtcagatgaaatagatggcaatatcccagattat
aagacggttattttcatccggagtaaagaccagctcaacatcacattgtccaaatgtggg
ctgaccatgctgagtaacctgggcacggcctttgcagaggctgccaaacagaccacagag
tgttctcaaaaggatgaagctccatttgttataaaaaataggctaggacttccagtatct
gtccgctacagtgagatgttttctccaatcaacaaggagcacaccaacaaccacacagtg
aagctgcagggtggcgaaaccttcgagatggactattcatctaaaacagactctgatcag
ttctcagcaatgatctccctgagtgaaaaggattactacttacagcccactccagagggc
cacacctcagccagtgtgatccccctgatcaaagtgggcagaggattgtacagcgtcatg
catttagactcaggggtcactcgtttcctggtctgtcaagtttcttctatggagggcagc
aagtacatcaagatccgctctcctttccagattatgaatcatttcttgacaccatttaaa
gttttggtgggatcaacatgtctgggtgtagctgaacccaatgaggagttttgtgtgcct
ctggactcgtacaggtctgaactgagccttcagccattaacggacgacggcgctgatgac
cagcagtttgagatgtcagagggcttcagttacgagtatgtctgcatccagcagcctgat
gtcggcaaccatcacacacacctgcagcagacatgtcgtcgccgtggggatcagagcggt
gggatgacgatcaatatcgtgccgttaaaggaaacagtgacgttcaaacaccccgaaggt
gttgtgagttcctttgacgttccctttgtgtttcacctctggcctcctgtgctgttacgc
aacctgctgccccaccccatcgccttcaaactaaaggagaatggagtttctgcccctgaa
gttactctgaatccaggccactctgctcagcttcacacagctgtcatcaatcagtccaaa
ctcgatcttcgcctggtggattatttggctcaggactggtcttctgaatacagtctccag
aaagaccaggatgaaatcgccttcattgtgttcaagtctctacgtgtggatgatgaagat
gatggcgaagggacagagaggaatagggccgagttggacatagcagtgcatgttaaatac
gacccagggcagactgttattgccatccactctccgtactggatggtgaataaaacgggc
aggttgctgcagtacaaggcrgatgatatccaccgtaaacaccccttagattacgacatg
cccctgctgttctccttcaagcctcgcaacttcctgcgaaacaataaggttcgactgatg
atctcagacagtgacctgtcagatgatttctctctggacacagtcggcagccatggagat
gtgaaatgtaaaggcagatacaaagattatctggttggcgtgaagatygaggcgagcagt
ttcagtctcacgcgcatcgtgaccttcgtaccgttttacacgctggtcaacagaaccaag
cacaaagttttcatatgtgaagaaggacaggagagctggactgaggcagagccagaacag
tccgctgttccattctggcctgagaacgacaccaagcggctaaaaatcaaagttgaagga
tgtttagcgcctccccagactattgacttcactcgacctgagaactgcctgctgcttcat
ctggacaaatctgtgggtggcattattgtagatgtgaatctgtcggagcactcagccaca
atccgattctctgagtaccatgatggtgcagcccccttcctcatcatcaatcacaccaga
gaccaccctcttcagttcaatcagagtgctcgaaaggaagtcacgtgggtggctgaagag
ctgctcgacttttccttctcgtcggaggaggacagctctgaggtggaggcagagatcgag
gagctggaggctggaaaagctgtgtactacacctggactaaacccagtggatcccgagag
cttagttggaagtgtggcaaatacagtgggaagctgaagagtgaggaggatctgcgggaa
gacatgaacaaagagggaaaactttttgtgatttcgttttttgaaggtctccagcgagtt
gtgctgttcaccgaggatcaacagatctacaaagtgctgtgtgagaatgaaaaggtgcag
cgggctgaacaggaaatcatcctgtccctgcagaacgtgggcgtgtctctggtcaacaac
accaacagccaagaggtttcctatattggaatcacaagctccgaggtggtttgggagtcc
aagcctaagaagaagaatcgatggaaaactctgagctctaaagaaactgacatgtttgag
gacaagttcaaagagtacattgagtctgggccgactgataattcaactgttcaactggag
aacgactttcaggtgttattcacacctagtggtacaaatatgcaaatgcttcagccggtg
gaggttcctcttaggaggcactttatgcctggagtgagggtggaatacagcgtctcacca
agacagaaaacctatcgtgtccaaatccaccgcatacagatccagaatcagctgccagga
gccatcttcccttatgttttttaccctgtaaagctgccaaagtcgatcacgatggattca
gaacctaaacctcttacagatatcagcattgttaccagagctgcgggacactccgacatc
tctcgcatcaagtacttcaaagtgttgattcaagagatgaatctaaagcttgatctgggt
ttcctttatgccatcctggacttttttactcctgagaatgccggcatcatgacctcagaa
caggaggtggagcagtttcagaaggacgtagagtacataaagacacaactaaatcatgtc
tctactgctgatacatctcccattagtctctatgagtactttcacatttcccctatcaag
ctgcatttgagtttctctctgagcactggaggagaagacggcttgaaagagaagcgagag
acggaactcatccccgtccagtccctcaacctgctgctgaaaagcatcggagcaactctc
accgacgtgcaggacgtggtcttcaaactggccttctttgagttgaccttccagttttgt
acgacccagcagctgcagtgggaggtcatcagacattattctaagcaggccattaagcag
atgtatgtgctggtgctgggactggatgtgctgggaaacccctttggactgataagagga
ttgtcagagggtgtagaggcctttttttatgaaccctatcagggagccatccagggtcct
gaggagtttgtagaaggaatggccttgggtgtaaaagctctggttggaggagctgtagga
gggttagcaggcgcagcctccagaataacgggcgccatggcgaaaggcgtcgctgcaata
accatggatgaagaatatcagcagaagcgacgagaagccatgaacaaacagcccagtggg
ctgagggatgggctgaccaggggtgggaaaggactggtttctgggtttgtgagtggaatc
acagggattgttaccaaacctattaaaggagctcagaaagagggtgcagcaggtttcttt
aaaggtgttggcaaaggwttggttggtgcagtggctcgaccgacgggagggattatcgac
atggtcaacaataccttccagggcatcaagagggtagcagagacctcgcaggacgtcata
tctctacgtccccctcgcttcatacatgacgacggcgtcatacgaccgtataaagagagg
gagggcatcggcagccagatgctgcagaaaattgagaatggacgttttgcgaagtacaga
tactttgctcacgcgaaagtcaacgagtctgacttcttcatgatcaccaagagagggatc
ttttttgtgaccaaaggcacatttggtcagctgacctgcgagtggcagtatctgtttgag
gaattcactaaggatccaataattgtggaccatcggcggcttcggattgaggcaaaggaa
cgagtgaaatcagtattccatgctaaagagtttggaaagatcataaactttgaaactgcc
gacatagccaagtgggttcttgacaaattggaggatgccagagaaagtttatccaaataa
DBGET
integrated database retrieval system
