Austrofundulus limnaeus (annual killifish): 106523876
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Entry
106523876 CDS
T06063
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106523876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
alim03041
]
106523876
03009 Ribosome biogenesis [BR:
alim03009
]
106523876
Enzymes [BR:
alim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106523876
Spliceosome [BR:
alim03041
]
Complex A
U1 snRNP components
U1 related factors
106523876
Complex B
106523876
Ribosome biogenesis [BR:
alim03009
]
Eukaryotic type
Pre-60S particles
Helicases
106523876
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Utp25_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
106523876
NCBI-ProteinID:
XP_013872903
UniProt:
A0A2I4BYS8
LinkDB
All DBs
Position
Unknown
AA seq
618 aa
AA seq
DB search
MPGYSDRDRGRDRGYGGGPPRFGGSRSGAGGGGGKFGNPGDRLRKKHWNLDELPKFEKNF
YQQHADVSHRSPQEVEQYRRTRTITVKGRDCPNPITKFHEASFPTYVMEVINKQNWTEPT
PIQAQGWPLALGGKDMVGIAQTGSGKTLAYLLPAIVHINHQPFLERGDGPICLVLAPTRE
LAQQVQQVAAEYGRASRLKSTCIYGGAPKGPQLRDLERGVEICIATPGRLIDFLEAGKTN
LRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEIRQLANDFLKDYV
QINVGALQLCANHNIRQIVDVCRNEDKEKKLVHLLQDIMSEEENKTIIFVATKMQCDYLT
RRIKKEGWIALGLHGDKRQNERDRVLNKFKTGEAPILIATDVASRGLDVEDVKFVINFDY
PNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQAGDLISVLREANQAINPKLIQMAEER
GGRSRGGRNDYRDDRRSRYSTGRRDYGGGRDRDGGRGFENGPSKAFGSNAQNGGYGASNG
TSNGYSGGTFNGNGQSNFGGNQTGSFGGQNNFQTTPFAPNNAVTQNGGSHPPFSFPQAQA
PQHPPPIAPYSMASQFSQ
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattccgacagagatcgcggcagagatagaggctatggcggtggacctcca
cggttcggtggcagtcgaagtggagccggaggtgggggaggaaaattcggtaatcccggt
gaccggctgcggaaaaaacactggaacctggacgagctcccgaagtttgagaagaacttc
taccagcagcatgccgacgtctctcacaggtcaccgcaagaggttgaacaatacaggagg
accagaacaattacagtgaaaggaagagactgtccaaaccctattacaaagtttcatgaa
gccagcttccccacttacgtaatggaagtgatcaacaaacagaactggactgaaccaaca
cccatccaggcgcagggttggccgttggctcttggaggcaaggacatggtcggcatcgct
cagactggctctggcaagaccctagcttatctcctgcctgcaattgttcacatcaaccac
cagcctttcttggaacgtggagatggtcccatctgtttagtgctagccccgactcgtgag
ctggcccagcaggtgcagcaggtggctgcagagtatggcagagcttctcgcctgaaatca
acctgtatctatggaggagcgccgaaaggacctcagcttcgtgacctggaaagaggtgtg
gagatctgcattgccactccaggcaggctcatcgacttcctcgaggcaggaaaaacaaac
ctccgcaggtgtacctacctggtgctggatgaggctgacagaatgttggacatgggcttt
gagccacagattaggaaaattgttgaccaaatcaggcctgacagacagactctgatgtgg
agtgccacgtggcctaaagagattcgccagctggcaaacgacttcctgaaggactatgtg
cagattaacgttggtgcccttcagctctgtgccaaccataacatccgccagattgtggat
gtttgccgtaacgaagataaggagaagaagctcgtccatctgctacaagacatcatgagt
gaggaggaaaacaagaccatcatctttgtcgcgacaaagatgcaatgtgattatcttacc
cgtagaattaagaaagaagggtggattgctctgggactccacggtgataaaagacaaaac
gaacgagaccgcgttcttaataagttcaaaactggcgaggccccaattctgattgctaca
gatgttgcatccagaggtttagatgtggaggatgtgaaatttgtcatcaactttgactac
cccaacaactctgaggactatatccaccgcattggcagaacggctcgtagccaaaagacg
ggcacggcctacaccttcttcacgccaaacaacatgaggcaggccggggacctgatctct
gtgctgcgggaggccaaccaggccatcaatcctaagctcatccagatggcagaggagaga
ggaggtcgttccagaggcggcagaaacgactacagagatgatcgtcggagtaggtactcc
actggaaggcgcgactacggcggcggtagggacagggatggtggtagaggctttgagaat
ggaccaagtaaggcatttggtagtaacgcacagaacggaggctatggagccagtaacggc
accagcaatggctactctggaggcaccttcaatggtaatggacagtccaacttcggtggc
aaccaaaccgggtcttttggtggccagaacaacttccaaaccacaccgtttgcccccaat
aatgctgtcacacagaatggtgggagccatcccccgttctccttccctcaggcacaggct
ccacagcatccccctccgatcgctccgtactccatggcctctcagttctctcagtaa
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