Austrofundulus limnaeus (annual killifish): 106523935
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Entry
106523935 CDS
T06063
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04382
Cornified envelope formation
alim04510
Focal adhesion
alim04512
ECM-receptor interaction
alim04518
Integrin signaling
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106523935 (col4a2)
04518 Integrin signaling
106523935 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106523935 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
106523935 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
106523935 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
alim04147
]
106523935 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106523935 (col4a2)
Exosome [BR:
alim04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106523935 (col4a2)
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106523935 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106523935
NCBI-ProteinID:
XP_013872967
UniProt:
A0A2I4BYZ7
LinkDB
All DBs
Position
Unknown
AA seq
1667 aa
AA seq
DB search
MQAQRKRKPINLRLLFLCLSISILXSGVHAGGKKNSGPCGGRDCSGGCKCFPEKGARGLP
GLLGPQGPXGPVGRPGDPGIQGPKGQKGDHGPGGFIGPKGSMGMTGVPGFSGIDGIPGHP
GQGGPRGRPGADGCNGTHGDSGLSGIPGFMGPPGPSGFPGRKGEKGDPLNITVYMQRFRG
DPGRPGFNGIIGPPGAQGREGNRGPQGPKGPSGPPGPPGPKGTMTKVLKGVKGEAGDIGA
QGLPGNYTNQQRQPQAGPPGKKGEKGEVGALADNKGEPGIMGFPGLRGENGANGRPGPRG
EPGEPGLNGGDGIKGERGDPGELISSGSWSSAAGPPGPPGPPGERGPKGERGPVGYQGFP
GLPGLSASDSQQQGWDFFGPFGFKGEQGDKGQQGDPGWPAIIAGPPGNEGRRGERGPPGP
KLLLEKYFAGDPGIRGRPGFAGLKGQKGDRGVCECRLGNSKRGLPGPAGEPGDAGMSGEF
GGEGDPGDQGPRGRDGQPGSPGFAGLPGPKGRKGDLTVASQKGYPGDPGDPGRDGLAGVP
GAPGPNGLPGLHGAHGLPGERPRGQQGDKGFQGQPGSPGADGFRGEPGPDIIGIKGQRGP
PGDDGLAGYHGVPGAQGSPGGCISGGDGGQVDDTGSCKTVPGPPGLPGLPGPFGLQGVPG
SLGLKGSYGEGGVRGEKGEQGEQGRGGSPGPPGFSGPRGDLGIPGRKGSVGNPGVPGASG
RYGADGEKGAHGEVLGAAPGPPGDPGQPGPQGVKGETGDQGSPGYAGMAGMPGMIGLKGS
KGPPGLAGEEGRPGPAGIYGFPGDPGRSGPPGPDGETGPPGITGERGIQGDPGPPGPVGL
KGTPGAYGDGGAIGEPGTPGDLGQPGPSGRPGLPGPKGSKGSSGMSGFDGRLGGFGQKGQ
EGLKGEIGMPGQAGLKGLLGQKGLKGESGLTGPPGKMAPQMLXDIKGAKGEDGDPGNQGF
TGPRGTKGLPGDPGFDGSHGFPGDPSNEKGFHGDPGAQGLPGVKGLPGPTGDRGIMGFDG
MSGNKGGKGSPGAYGASGEKGRKGAKGDKGLRIDLPGTPGLRGEDGFPGEPGSKGLFGIT
GDIGITGFDGIEGMKGKKGDPGLAGGPGSDGQRGTPGNQGQKGFPGSPGKDGQPGFPGFT
GVKGYPGLKGLFGLHGLKGQKGVTGTPGLDLTGPAGETGVKGQKGESGELNTQSGTPGFV
GLKGFQGVQGDFGQPGLPGFPGLVGPDGTSDKPGFSGDPGFPGTPGSQGFPGARGLPGSD
AFPGQKGVPGNTGFPGFPGAKGFQGDLGPTGYRGHHGVSGRKGGKGDQGVMGFPGHTGVK
GERGPSGPKGTTGLPGFPGQPGSQGPAPIPIKVPVERGRPGPQGILGPKGIRGEPGPRGP
PGDQGFIGPLGERGMPGVSGTPGVPGFRGDHGQLGHPGLQGTEGRRGNPGIPGLPGMPGR
SVSVGYLLVKHSQTVETPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSCLPRFSTM
PFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPVEETEIKPYISRCSVCEAPSVAIAVHS
QDTSIPQCPVGWRSLWIGYSFLMHTSAGNEGGGQSLSSPGSCLEDFRTAPFIECNGAKGT
CHYFANKYSFWLTIMNQDFHSQPASQTLKAGQLLSHISRCQVCMKNL
NT seq
5004 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgcagcgcaagaggaaaccgattaatctgaggctgctgtttctgtgcctctcc
atctccatcctcayctccggagtgcacgcaggtgggaagaagaacagcggcccgtgtgga
ggaagagactgcagcggaggctgtaaatgcttcccagagaagggcgccagaggacttcct
gggcttcttggtcctcaaggcccagygggaccagtaggccgaccaggagatcctggtatc
caaggaccaaaagggcagaaaggtgaccacggacctggtggcttcataggtcctaaaggc
agcatggggatgaccggtgtacctgggttctctggaatcgatggcattcctggccacccg
ggacaaggtgggccccgggggaggcccggagcagacggctgtaacgggactcatggagac
tcaggactgtctggaattcctggatttatgggtcctcctggaccttctggatttccaggc
aggaagggggagaagggagaccctctgaacatcactgtgtacatgcagcgcttcaggggt
gatccaggaagaccaggattcaatgggataattgggcctccaggagcacaaggacgggaa
ggtaacagaggcccacaaggaccaaagggcccttcaggtcctcctggtcccccaggacca
aagggcaccatgaccaaagtgttaaagggagtcaaaggagaagctggggacatcggagca
caagggctaccgggaaactacacgaaccagcagcgtcarcctcaagcagggccgccaggg
aaaaaaggtgaaaaaggagaagttggggctttggcagacaacaaaggagaacctggtata
atgggatttcctggactgaggggtgaaaatggtgcaaacgggcgtcctggaccgaggggt
gagcctggtgaaccaggactgaatggtggtgacgggattaagggagagagaggagatccg
ggggagttgatttcttcaggatcctggtcttcagctgctggtccccctggaccccctgga
ccccctggtgagcgtggtccaaaaggagagagaggtccagttggataccaaggttttcct
ggactgcctggactttctgcttctgactcacagcagcaagggtgggatttcttcggcccg
tttggttttaaaggagaacaaggagacaaaggccagcaaggtgatccggggtggcctgct
atcatcgcgggacccccaggaaatgaaggacgtcgaggagaaagaggcccaccaggaccc
aaactattgttggaaaaatactttgctggagacccaggaataagaggacgccccggcttt
gcaggcttgaaaggacagaaaggtgaccgcggcgtgtgtgagtgcaggcttggaaattcc
aagcgtggtttgcctggtcctgccggcgagcctggggatgccgggatgagtggagaattt
ggtggtgagggtgaccccggagaccagggtcctcgaggaagagatggacagcctggctct
cctgggtttgctggtcttccaggtccaaagggtcgtaaaggagacctgactgttgcctca
cagaaaggatatcccggtgaccctggagatccaggaagagatggtttggcaggggtaccg
ggggctccaggcccaaatggtcttcctggtttgcatggcgctcatggtcttccaggtgaa
agaccccggggacaacagggagacaaagggttccaagggcaacctggttcacctggtgca
gacgggttcagaggagaacctggtccagacattataggcatcaaaggacagcgtggtccg
cctggagacgatggtcttgctggctaccatggagtaccaggagcacagggaagtcctggt
ggctgtatatcaggaggtgatggaggacaggtggatgacacaggctcttgcaaaactgtt
cccggacctcctggcctgcctggactcccaggaccatttggattacaaggtgttccagga
tctctgggcctaaagggttcatacggtgaaggtggagtcagaggggagaaaggagaacaa
ggggagcagggcagaggtggcagtcctggaccaccaggtttctctggacctcgtggagac
cttggaattcctggcagaaaaggttcagtaggaaacccaggtgtgcctggtgcttccggt
cgatacggggctgatggtgaaaaaggtgctcatggtgaagtattaggagcagcacccgga
ccaccaggtgacccaggacaaccgggtcctcaaggagtaaaaggcgaaactggagaccaa
gggtcgccaggctatgcaggaatggccggcatgcctggtatgataggcttgaaggggagc
aaaggtcctccaggtctggcaggagaagaggggagacctgggccagcgggcatatatggg
ttccctggtgatcctggaagatcaggtccaccggggcctgatggtgaaactggaccacca
ggaatcaccggcgagagggggatacagggagatccaggtcctccaggtccagtgggatta
aaagggacaccaggtgcttatggtgatggtggtgcaataggagaacctggcacaccaggt
gatctaggacaaccaggaccaagtggacgaccaggacttccaggaccgaagggaagcaaa
ggatcctctggcatgtcaggttttgatgggcgtctgggtggttttgggcagaagggccaa
gaggggctgaaaggagagattggaatgcctggccaagcagggctgaaaggattactaggc
cagaagggattgaaaggtgagagtgggctgactgggccacctgggaagatggctccgcaa
atgctcrttgacataaagggagccaaaggagaagatggagatccaggcaatcaaggattc
acaggaccaagaggtaccaaaggtttgcctggtgaccccggttttgatggatctcacggt
tttcccggagaccccagcaacgagaaaggttttcatggagatccaggagcacagggactg
ccaggcgtcaaaggattgccaggaccaacaggagacagaggcattatgggctttgatgga
atgtctggaaacaagggaggcaaaggaagccctggtgcttatggtgcatcaggtgaaaaa
ggaaggaagggagccaaaggtgacaaaggccttcgtatagaccttccaggaactcctgga
ctgagaggagaggatggattccctggagaaccaggttcgaaaggattatttggaataact
ggcgacattggtataactggttttgatggtattgaagggatgaagggaaagaaaggtgat
ccaggactagcaggaggcccaggctctgatgggcagagaggaactcctggtaaccaaggt
caaaaaggttttcctggatctcctgggaaagacggacaaccaggctttcctgggttcact
ggagtcaaaggctaccctggtcttaagggtctctttggattacatggactgaaaggacaa
aagggagtaacgggaacaccaggtctggatcttactggacctgctggggagacgggagtt
aaaggacaaaagggggagagtggtgaactcaacactcagtctggtactccaggctttgtg
ggtttaaaaggttttcagggggttcaaggtgactttggccaacctggactgccaggtttc
ccaggtctggtaggaccagatgggacctcagacaaaccaggatttagtggggatcctgga
tttccaggaacaccaggatcccaaggttttcctggagccagaggattgccgggttcggat
gctttcccaggacaaaagggtgtaccaggaaatacagggtttcctggattccccggtgct
aaaggcttccaaggagacttaggtccaactggctaccggggccatcacggtgtctctgga
aggaaagggggaaaaggagaccaaggagtcatgggatttcctggtcatactggtgtaaaa
ggagaaagaggaccatcgggtccaaaaggaaccactggacttccaggctttcccgggcaa
cctggcagccagggtccagctccaatacccattaaagtgccagtagagaggggccgtcca
ggaccgcagggratcctaggaccaaaggggattagaggggaaccgggaccacgaggccca
ccaggagatcaagggttcataggacccctcggggaaagaggtatgcctggggttagtgga
actccaggagtgcctggattccgtggagatcatggacagttaggacaccctggtctgcaa
ggcacagaaggtcggcgtggtaaccctggcatccccgggttacctggtatgcctggccgc
agtgtcagcgtgggctatttattagtgaaacacagccagaccgtggaaacccccatgtgt
cctgtgggaatgtccaaactgtgggatggctacagcctgctgtactttgagggccaggag
aaggcccacaaccaggaccttggtttggcaggctcttgcctcccacgctttagcaccatg
cccttcctgtactgcaaccccggagacgtttgctactatgccagcagaaacgataagtcc
tactggttgtcgaccaccgctccactccccatgatgcctgtggaggaaacggaaatcaaa
ccgtacataagccgctgctccgtgtgcgaggctccgtcggttgcgatcgccgtccacagt
caggacaccagcatccctcagtgtcccgtgggctggcgcagcctgtggattggctactcc
ttcctcatgcacacatcagcaggaaacgaaggcggaggccagtccctgtcgtcgcccggc
tcctgcctggaggacttccgcacggcgccattcatcgagtgtaacggggccaaaggcaca
tgccactacttcgccaacaaatacagcttctggctgacgatcatgaaccaggatttccac
tctcagccggcgtcacagacactaaaagcaggccagctcctttcgcacatcagccgctgc
caagtctgcatgaagaacctgtga
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integrated database retrieval system
