Austrofundulus limnaeus (annual killifish): 106523936
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Entry
106523936 CDS
T06063
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04382
Cornified envelope formation
alim04510
Focal adhesion
alim04512
ECM-receptor interaction
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106523936 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106523936 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
106523936 (col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
106523936 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
alim04147
]
106523936 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106523936 (col4a1)
Exosome [BR:
alim04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106523936 (col4a1)
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106523936 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106523936
NCBI-ProteinID:
XP_013872969
UniProt:
A0A2I4BZ39
LinkDB
All DBs
Position
Unknown
AA seq
1638 aa
AA seq
DB search
MLLPSGALLLLTAFCSNLDLTGAEGCGTSCGKCDCSGVKGAKGERGFPGLHGTMGFPGMQ
GHEGPPGPMGPKGDYGLPGAPGLKGVRGPPGLPGMPGNPGLPGINGNDGPPGPPGIPGCN
GTKGERGRDGSPGFPGLQGPPGIPGSAGMKGDPGGVIGIFPRPQKGEPGFPGTPGLPGPS
GLSGPTGPPGPRGYQGLKGDPGPPGPPGEKGDRLSFVGEKGEKGEPGLRGPPGPPGRPEE
VGGTTTIFIPGPPGYQGPQGDKGEKGFCLPYQTGIKGEPGPPGPRGKPGKDGENGFKGEK
GFAGAPGYPGLLGEKGEPGPPGYAGGPPGSPGPSGPPGFPGEKGFQGPQGEPGIPGRHIE
GPRGDKGQKGEIGEKGDRGVEGLSLPGPPGQQGPAGPPGPPGPPIDPEECNIKRGDPGPP
GPPGLTGEVGHKGDRGDACISCEGTGPPGIQGIKGEQGPPGPGGFKGEKGRAGIPGEPGR
PGSAGTPGLMGAPGAVGEPGDIFIAEGFKGDKGRPGNPGFQGQPGQDGLPGRDGIPGPQG
PKGEPAKEGIKGERGPDGDPGLTGPPGERGPPGLPGYARPGDPGEKGSQGSPGLPGSPGR
PGAKGDPGVGVSTPGPQGVPGPRGETGLPGLQGDRGPPGDPGLPGFPGEKGEHGIPGIGF
PGPAGPKGISGIPGTTGLPGEPGKPGHDGSPGKPGPPGQKGEPGRGLPGPKGSQGYTGVT
GFPGEKGNVGFPGIPGREGPTGLPGPQGLQGEVGPPGPSGPAGQPGAPGKGLPGPPGPQG
PQGDPGPYGIEGIKGEKGYPGLPGLDMPGPQGDKGSPGFPGVPGFKGLPGQPGLPGIDGP
SGNQGSKGEMGVMGTPGTPGFPGPPGSPGSPGLRGDPGFTGPRGDSGEPGLKGDRGDKGP
PGPPGNLTKVEMEHLKGQKGDIGDPGQPGVTGEKGHEGSRGDPGMPGKDGAPGLPGQQGD
KGDPGFPGEPGVPGQVGLKGSVGDMGIPGPVGPKGAKGDFGTPGHPGFRGAEGEKGDSGV
PGEPGIGLPGHPGEQGQTGQPGFPGSRGDKGEKGQEGMPGKPGLPGTKGDQGGTGYPGQP
GRPGEKGTPGLAGSAGDPGRDGRPGEGGLQGPPGARGEKGDPGEDGIPGSIGERGDPGTP
GVGLPGPPGTLGVKGDKGSAGVPGMPGQPGIPGVKGDKGLPGPLGPQGEPGEPGLPGISK
EGPKGDKGETGPTGETGFPGAPGPTGVPGRDGPKGETGDPGPPGYQGESGHKGDPGAPGL
SGPPGLPGIDGQKGEKGLQGVPGFPGTKGFVGDLGFKGEVGDRGFPGEKGNEGPPGPPGP
QMLIKGDIGFPGNPGLPGPQGPSGFPGQKGQQGVTGIPGPKGDDGLPGFNGQSGAKGEPG
LPGPEGPRGHPGPPGPDGVPGQVGPPGPSSMEHGFLVTRHSQAVEIPLCPYGTRLIYDGY
SLLYVQGNERSHGQDLGTAGSCLKKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPMPM
SMAPITGDSIKPFISRCVVCEAPAMVIAVHSQTIMIPPCPEGWDSLWIGYSFVMHTSAGA
EGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDDDMFRKPIPTTLK
AGNLQTHISRCQVCMKRT
NT seq
4917 nt
NT seq
+upstream
nt +downstream
nt
atgctgttaccgtccggcgcgctcctgttgctgaccgctttctgctccaacttagacctg
acaggagctgagggttgtggaacttcgtgtggaaaatgtgactgcagtggtgtgaaagga
gcaaagggggagcgtggatttccaggtcttcacggtaccatggggttcccagggatgcag
ggacatgaggggccgccagggccaatgggcccaaagggagattatggtttacctggagct
cctgggctgaaaggagtgcgaggccctcctggtctgccaggtatgccaggaaacccagga
ctaccaggcatcaatggaaacgatggtccacctggtccacccggtatcccaggatgcaat
gggacgaaaggtgaaagaggacgtgatggttctcctggttttcctggacttcaaggtcct
cctggcatcccgggatctgctggaatgaaaggagaccccggtggtgtgattgggattttt
cctcggcctcagaaaggagaaccaggatttcctggcacacctggactacctggaccatct
ggcctcagtggacctactggacctccaggacctcgagggtatcagggacttaagggtgat
cctggaccgcccggccctccaggggaaaaaggagaccgcttgtcttttgtgggtgaaaaa
ggagaaaagggtgagccaggactcagagggccccctggcccccctggacgtcccgaggaa
gtgggaggaacgaccaccattttcataccaggaccaccgggataccaaggacctcaagga
gacaaaggagaaaagggattctgcttgccttatcagactgggatcaaaggtgaaccgggg
ccaccaggaccacgaggtaaacctggaaaagatggggagaatggattcaagggagaaaaa
ggctttgctggagctcctggataccccggtttattgggagaaaaaggagaacctggaccg
cctggttatgctggtggtccccctggtagtcctggtccatctggacccccaggttttcca
ggagaaaaaggtttccaaggtcctcagggagagcctggtataccaggtcgccacattgaa
gggcctcgtggagacaagggtcagaaaggagaaataggcgagaaaggcgatagaggcgta
gaaggactgtctcttcctggaccgcctggacaacaaggaccagctggacccccagggcca
cccggaccaccaattgacccagaggagtgtaacattaaaaggggagaccctggcccacct
ggacctccagggttaacaggagaagtaggacacaaaggtgacagaggagatgcctgcatt
agttgtgaaggcactggtccacctggaatccagggcatcaaaggggagcaaggacctcca
ggtccaggtggcttcaagggagaaaagggtcgcgctggcattcctggagaacctggtaga
cctggttctgcaggaactcctggactgatgggagcccctggtgctgtgggtgaaccggga
gatattttcatagcagaaggttttaagggggacaaaggtcgtcctggtaatcctggcttt
cagggacagccaggtcaggatggactgccagggagagatggtatcccgggtccacagggt
cccaaaggagaaccagccaaagagggcatcaagggtgaacgtggaccagatggggaccct
ggtcttaccggacctccaggagaaaggggtcctccaggtttaccaggctatgccagacca
ggagaccctggagagaagggtagtcaagggtcaccaggattgcctggatctcctggacga
cctggtgcaaaaggggatccaggtgttggtgttagtactcctggacctcagggggtacct
gggccacgtggagaaactggtctgcctggacttcaaggtgacagaggtcctccaggagat
ccagggttaccaggttttcctggagaaaagggtgaacatggaataccgggaattggattt
cctggtccagcaggtcctaaaggaatcagtggaattcctggaaccacaggattgcccgga
gagcccggaaaaccaggacacgatgggtcacctggaaaacctggcccacctggacagaaa
ggtgaacctgggcgtggtcttcctggcccaaaaggttcacaaggctacacaggagttaca
ggtttcccaggtgagaagggtaacgtcggattccctggtattcctggacgtgaaggacca
acaggactaccaggacctcaaggacttcagggtgaagttggacctccaggaccttctgga
ccagctggccaaccaggtgctcctgggaaaggtttgcctggacctcctggaccacaagga
ccacagggagatcctggaccttatggcatcgaaggtataaagggagaaaaaggttaccct
ggtcttcctgggctcgatatgccagggcctcaaggagacaaaggaagtcctgggttccca
ggagtcccaggtttcaaaggactaccaggccaacctggattaccaggcatagatggacca
agtggaaaccaaggttcgaaaggtgaaatgggagtcatgggaacaccaggaaccccagga
tttcctggacctccaggatcacctggatctcctggtctgagaggtgatcctggttttact
gggcctagaggagacagcggagagcctggacttaaaggtgacaggggagataaaggtcct
ccaggacctcctgggaacttgacaaaggttgaaatggagcacttgaaggggcaaaaggga
gacattggagacccaggtcaaccgggtgtcactggagagaagggccacgaaggatctcgg
ggcgatccaggaatgcctggcaaagatggtgctcctggattacctggacaacaaggtgat
aaaggagatcctggttttccgggagagcctggcgtgccgggacaagtgggtctcaaaggc
agtgtgggcgacatgggaatacctggtccggttggtccaaagggtgcaaaaggagacttt
ggtacaccaggtcatccagggttcagaggtgcagagggtgagaaaggagactcaggggta
cctggtgagccaggtattggtcttcctgggcatccaggagaacagggtcagactggccag
ccagggtttccagggtcacgtggggacaaaggtgaaaagggtcaagagggaatgcctggg
aaacctggactaccaggaaccaaaggagaccaaggaggcactggatacccaggtcaacca
ggtagaccgggagagaagggtactcctggacttgctggatctgcaggagatccaggtcgt
gacggccgtcctggtgaaggcggtctacaggggcctcctggtgctcgtggagaaaaaggt
gaccctggagaggatggcatccctggatccattggggagagaggagacccaggtacacct
ggtgtaggtttgcctggacctcctggaactcttggcgtcaaaggtgacaaaggtagtgca
ggtgtacctggcatgccaggtcagccaggtatccctggtgttaaaggagacaaaggactt
ccaggtccgctgggaccccaaggagagccaggagagccaggtcttccaggcatctctaaa
gaaggccctaaaggagacaagggagagacaggtccaactggtgaaacaggattcccagga
gcaccaggacctactggagtgcctggcagagatggcccaaaaggagagacaggtgacccg
ggtccacctggttaccagggagagtccggtcacaagggagaccctggagctcctggactt
tctggtccacctggtctcccaggtattgatggtcagaagggagaaaaaggattacagggt
gtcccaggcttcccaggtaccaagggttttgttggggaccttggattcaaaggagaagtg
ggcgacagaggcttccccggagaaaaaggtaatgaaggtcctcctggtccccctggacct
cagatgttaataaaaggagacatcgggttcccaggaaatcctggattaccgggtccccag
gggccatctgggttccctgggcagaaagggcagcaaggtgtgactggtattccaggtccc
aaaggtgatgatggtctccctgggtttaacggtcagtcaggagccaaaggagagcctggt
ctaccgggacccgaaggacccagaggacatcctggccccccaggacccgatggtgttcca
ggtcaagtcggtccacctggcccgtcatccatggagcatggcttcctggtgactcgtcac
agccaagcggtggaaattccattatgtccatatgggaccaggctgatttatgacggctac
tccttgctttatgtgcaaggcaatgaacgctcccatggacaagacttaggtacggcaggc
agctgtttgaaaaagttcagccctatgcccttcctgttctgcaacatcaacaacgtgtgc
aactttgcctctcggaatgattattcgtactggctcacctcgcccgagcccatgcccatg
agcatggcgcctatcaccggggacagcatcaaacctttcattagcaggtgtgttgtatgt
gaagctccagccatggtgatagctgttcacagtcagaccataatgatcccaccttgccct
gaaggttgggactctctgtggattggctactccttcgttatgcataccagtgcaggtgct
gagggttcaggccaggccttggcctctcctggatcctgtctggaggagttccgtagcgct
ccgttcatcgagtgtcacggccgaggaacctgcaactactacgccaactcctacagcttc
tggctcgccaccatcgaagacgatgatatgtttaggaaacccatcccaacaacccttaaa
gcaggcaatctccaaacacacataagccgttgtcaagtgtgcatgaagaggacataa
DBGET
integrated database retrieval system
