Austrofundulus limnaeus (annual killifish): 106524149
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Entry
106524149 CDS
T06063
Symbol
arid1a
Name
(RefSeq) AT-rich interactive domain-containing protein 1A
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106524149 (arid1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
alim03000
]
106524149 (arid1a)
03021 Transcription machinery [BR:
alim03021
]
106524149 (arid1a)
03036 Chromosome and associated proteins [BR:
alim03036
]
106524149 (arid1a)
Transcription factors [BR:
alim03000
]
Eukaryotic type
Helix-turn-helix
ARID
106524149 (arid1a)
Transcription machinery [BR:
alim03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
106524149 (arid1a)
Chromosome and associated proteins [BR:
alim03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
106524149 (arid1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
106524149
NCBI-ProteinID:
XP_013873288
UniProt:
A0A2I4BZW5
LinkDB
All DBs
Position
Unknown
AA seq
2261 aa
AA seq
DB search
MAAQVATLNTSPPSELKKXDRELKDDSGPGEKQSDKKQPGLDSVSPGRGELQDGADGGNA
GGGGEPEMKNGNGNPPRVNNNTPNDSVGPEGNNHPGFVHYHGAAVPPPSYGFXQHYGRAA
FHQYGGQQSPGMPAASAGPGVQSSNMMDPYQPNSHEHGFSNHQFNNYNPFPSRTPYPGQG
QAYAMNSPRSAQAPTAGGQPAKQQPPPGGPAAMAGSYNNQRYNIGNPQPTSTPTLNKLLT
SPSSTRGYPNYPSGDYGGQEGASKGPAEYGGSNPGWQQRSHHPSPMSPGSAGQPLARSQP
PGPMDPMAKMRGQPYGASSPYSQQSQQGPPAGPQPGPGYPGQGYGPPGPQRYPVGMPGRT
PGNMGGMPYGPQMGTYGQQGPGGYGSQGQAQYYNQPGQAPHPGQQQSLYPQPTPGQPGRQ
SPYPGQPHPPTPASHNQGGPPYQQPHMPPQSQGPLPGPSQGPPQSQPPYTQASAPQSSQS
PYAQQQGPPGQAPQQPSSQAPPGSQGQSSYPGSTQGPPQPPSQQQAQTHPQQPPGHGQHP
QGQPAAYPQNAQQQQAQQSPYQRFPPPQQQELSQDSFQSNAPPSTQSKSGSEDGQGRPSS
LPDLSGSIDDLPTGTEGALSPGVSTSGVSSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPS
PAGSPASASTPRAGPLSPANMPGTQMPPRPSSVHSDGNLHPGMSQSPMAQDRGFMQRNPQ
MPPYGSPQSASALSPRQSSGGQMHPGMAPYQQNSSMGGYGQQGGQYGPQGYPRQPAYGNM
PNANYPGPGMGSMNPMAGQGGGPPYAGMPPGRIPPNQMGARPYGPNMGPSMGPNMPPNMG
NIPPQVVSGMCPPPGMNRKPQDPTAMQHPPTNRMPGYPNMSPYGPPMNSMPGMMNTSGGS
PYPMGPNMANNTSGMASSPEMNNKANNKVDGSVTPKPEPKSKKSNSSTTTSEKITRLYEL
GPEPERKIWVDRYLAFVEEKAMGMTNLPAVGRKPLDLFRLYMSVKEIGGMTQVNKNKKWR
DLATSLNVGMSSSAASSLKKQYIQCLYAFECKIERGEDPPPEIFTDNKKNQAAKVQPPSP
ASLCSTAGSGSLQGPQTPQSTSSSMAEGGDLKPPTPASTPHTQMPPMPPSSKISFSLQDP
FSDGSDPAFLRKNMTPNSTYQPGMNTQDMPGRMGPYEPNKDPFSNMRKVGEQFLPANQGP
NSVVGEQQQQQPPQQQPPFNRGPPGAMGTMPRQQYPYGPGYDRRPEQGMGPEGNMGSGAP
QPNPMMPANADSGMYSPNRFPPQQPRHDSYGNHQYPGQGTPPAGSYPNQQPGMYPQQSYK
RPVEGGYPPSKRHETEYSGSFPEGQPAPQQQQQGGTSAPPSGQQEPYNQYSGTGPYPGPD
RRPPGPANQFPFPFSRERMQGASGPNAQPNMPPQMIQSVPEGPQGGMWQGPRDINYQNYP
NRQGGPGGPPQGPGYPGMNRSEEMMSSEQRMNHDGQWGGQMGPRQPPYGPAGPGQPMPRS
VQSNYQPXQGVQNHIPQVPSPASIPRSMESRTSPSKSPYMHGVMKMQKAGPPVPASHVVP
PSVQSPLIRRDMPFPPGSVEASLPVLKPRRRLTMKEIGTPEAWRVMMSLKSGLLAESTWA
LDTINILLHDDNSIATFDLNTLPGLLELVVEYFRRCLIEIFGILREYEVGDPGQRTLLDP
DALKRDLDSMEEEEPLPEDMQQEEVDDEDEEDTERPAHVKEEGNEEPCPRDEKREDDERK
SKGPSSVQTSSLQFLPTHERPKQASKFDKFPLKVVRKTDPFVAXKSSSHGKVQEFDSGLJ
HWSAGGGDSTEHIQTLFEPRKDFLEPRERIPVPAALLKRRLLDEDIREHCLPAEEEKRKQ
DEEERQKQASLSEKSTDSEKASSVVSSDEERQSDSDTKPAEKDSKSHQENNRSVLSSGSI
LAQQAQVTGTILEDEPHSKDEGPLVTLASWQDSLARRCICVSNIIRSLSFVPGNDHEMSK
HPGLLLMLGRLILLHHWHPERKQAPLTYEKDEDSDEGVGQKDEWWWDCLELLRENTLVTL
ANISGQLDLSVYTESICLPLLDGLLHWAVCPSAEAQDPFPTLGPHSALSPQRLVLETLSK
LSIQDNNVDLILATPPFSRLEKLYGNLVRLIGDRKVAVCREMAVVLLANLAQGDTTAARA
IAVQKGSVGNLLGFLEDSLAATQLQQSQSSLLHLQGMPFEPTSPDMMRRAARALLALAKV
EENHSEFTLHESRLLDLSVSPLMNSLVSHVICDVLFLIGQS
NT seq
6786 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccactctgaacactagtccgccttctgaacttaaaaagycggat
cgagagctcaaggacgattcgggtccgggagagaagcagtccgataaaaagcagccgggt
ttggacagcgtgtcgccgggccgtggggagctgcaggacggagccgacggtggaaatgca
gggggaggaggggaacctgagatgaagaacgggaatgggaacccgcccagggttaataat
aataccccgaatgactcagtcggaccggagggaaacaaccatcccggttttgtgcattac
cacggcgccgccgttcctccaccttcgtacggattcartcagcactacggtcgggccgct
tttcatcaatatggcggacaacaaagccctggcatgccagctgcttctgcgggtccgggt
gtgcagtcgagcaacatgatggacccgtaccaacccaattcgcacgagcatggcttctcg
aaccaccagttcaacaattacaacccgttcccgagcaggactccgtatcccggccagggc
caggcgtacgccatgaactcccctcgcagcgctcaggcgccgacagctggggggcagcca
gctaagcagcagccaccgccgggaggacccgcggcgatggccggatcttacaacaaccag
aggtataacatcgggaacccgcagccgacctccacgccgacactcaacaagctcctaacc
tcacccagctctacgcggggatacccgaactacccgtccggcgactacggtggccaagag
ggagctagtaagggaccagcggagtacggagggagtaatccgggctggcaacaaagaagc
catcacccgtcccccatgagcccgggaagtgctgggcagccgctcgcacggagccagcct
ccaggtcccatggatccaatggcaaaaatgagaggtcagccatacggagcaagcagtcca
tacagtcagcagtcacagcagggacctcctgctggccctcaacctgggccggggtaccca
ggccagggttatggccctccaggaccccagcgatacccagtaggaatgccaggacgtacc
cctggaaacatgggtggaatgccttatggtccacagatgggtacttatggacagcaggga
ccaggggggtatggttctcagggccaggcccaatattacaaccagccaggccaggctcct
catccgggtcaacaacaatccctttacccacagcccacacctggacaacctggcaggcag
tctccttacccagggcagccccaccctccaactccagcctcacacaaccaaggaggacca
ccctatcagcagccccacatgcccccgcagtcccaggggccactgccaggcccgtcacaa
ggaccccctcagtcccagccgccctacactcaagcatcggccccacagtccagccagtct
ccttatgcccagcagcaggggcctcccggtcaggccccgcagcagccaagctcccaggct
cctcctggatcacaaggtcaatctagctacccaggatccacgcagggtccaccgcagccc
ccctcgcagcagcaggcgcagactcacccgcagcagccgccggggcacggccaacatcca
caggggcagcctgcagcgtacccccaaaacgctcagcagcaacaagcacagcagtctcct
tatcagcgctttcctcctccacagcagcaggagttatcccaggactcatttcagtccaac
gcacctccatccactcagtccaaatctggctcagaggacggtcagggccgcccatccagc
cttccggacctgtcggggtccatcgatgacctgcccacgggtacggagggcgccctgagt
cccggcgtcagcacgtcgggcgtgtcgagcagccagggcgagcagagtaaccccgcccag
tcgcccttctcgcctcatacgtccccccacctgccgggcatccggggrccttcgccttcc
ccggcgggttcccccgccagcgccagcacgccccgcgcaggaccgctgtcacccgccaac
atgccagggacccagatgcctcccagaccatcaagtgtgcactctgatgggaacctgcat
cctgggatgagtcagtctccgatggctcaggacagagggttcatgcagagaaaccctcag
atgcccccttacggctccccccagtctgcctctgcgctgtcgcctcgccagtcctccgga
ggacagatgcatcccgggatggccccgtatcagcagaacagctccatgggtggctacggg
cagcagggaggacaatacggtcctcaaggttatccacgccaacctgcctatggcaatatg
cccaacgccaactaccctggaccagggatgggctccatgaaccccatggcaggacagggt
ggaggcccgccatacgctggtatgcctccaggaaggatccctccaaatcaaatgggggcg
cgtccctatggccctaatatgggccccagcatggggccaaacatgcctcccaacatgggc
aacattccaccccaggtagtctccggaatgtgccctcctccaggcatgaacagaaagccc
caggacccgacagccatgcagcatcctcctaccaacaggatgcccggttaccccaacatg
tcaccatatggtccgccaatgaatagcatgcctggaatgatgaacacttctggtgggtcc
ccttatcccatgggaccaaacatggccaacaacacaagcggcatggcctccagcccagag
atgaacaataaggcgaataacaaggtggatggcagcgtaacacccaaaccagagcccaaa
tccaagaagtccaactcctccacgactacaagcgaaaagataacccgcctgtacgagctg
ggaccagagccagagaggaagatttgggttgaccggtacttggcttttgttgaggagaaa
gctatggggatgaccaacctgcccgctgtgggacgcaaacccctcgacctgttccggctc
tacatgtcggtcaaagagatcggaggcatgacccaggtgaataagaataagaagtggcgt
gatctggccacctccttgaatgtgggcatgtccagcagtgctgccagctctttgaagaag
cagtacatccagtgtctgtacgcctttgagtgtaaaatcgagcgcggtgaagaccctccg
cctgagatctttacagacaacaagaagaaccaagctgccaaggtgcagcccccctctcca
gcgtccctctgctccacagctgggtcaggctctctacagggtccgcagacgccccagtcc
accagcagctccatggccgaggggggagatctgaaaccacctacgccggcctccactcct
catacccaaatgccccccatgccacccagctccaagatcagcttcagtttgcaggacccc
ttctctgatggcagcgaccctgcatttctcaggaagaacatgacccccaactccacctac
cagcctggcatgaacacacaagacatgcccggtcgcatgggcccctatgaacccaacaag
gacccctttagtaacatgcgcaaagtcggggagcagtttctacctgccaaccagggacct
aacagtgtggtgggtgaacaacagcagcagcagccgccacaacagcagcctccattcaac
cgaggaccgcccggggccatgggcacaatgccacgacagcagtatccttatggaccaggc
tatgacaggagaccagagcaggggatgggtccagaaggtaacatgggctctggtgcccct
cagccaaaccccatgatgcccgccaacgccgactcggggatgtactctccaaaccgtttt
ccaccacagcagccacggcatgattcctatggtaatcatcaatatcctggacagggcacg
ccccctgctggctcttaccccaatcagcagccaggaatgtaccctcaacagagctacaaa
cgtcctgtagaaggagggtacccgccatcaaaacgccacgagactgagtacagtggttcc
ttccccgagggtcaaccagcaccgcagcaacagcagcaaggaggcacctctgcaccgcct
tcaggacagcaggagccatacaatcagtacagcggcacagggccctaccctggtcctgac
cgccgtcctcctggacccgccaatcaatttccttttcccttcagtcgtgagcggatgcag
ggagcatccgggcccaacgcgcagcccaacatgccccctcagatgattcagtccgtccct
gagggccctcaggggggcatgtggcagggacctcgagatatcaactatcagaactaccca
aaccgacaaggcggtcctggtggcccacctcagggaccgggctaccctgggatgaaccgc
tccgaggagatgatgtcatcagagcagcgcatgaatcatgacggccagtgggggggacag
atgggccctcgacagcctccctacggtccagctgggcctggacaacccatgcctcgttca
gtacagtccaactaccagcccyctcagggggtgcagaaccacattccacaggtgcccagc
ccggcctccataccccgctccatggagagccggacatcacccagtaaatccccctacatg
cacggagttatgaagatgcaaaaggccggacccccggtgcctgcatcccatgtagtgccc
ccttcggtgcagtcgcctctaatacggagagacatgcctttccccccaggctctgtagag
gcttcacttcctgtcctgaagccacggcgaagactaaccatgaaagaaatcggaacacca
gaggcctggagagttatgatgtcattaaagtctggtttattggctgaaagtacgtgggcc
ttagataccatcaatattctcctacatgatgacaacagtattgctacttttgatcttaac
acgttgcctggtctgctagagttggtggttgagtatttcagacgttgcctcattgaaatc
tttggcatcctgcgggagtacgaagtcggagaccctggccagaggacgctgctcgatcca
gatgccttaaagcgagacttggacagcatggaagaagaggaaccactaccggaggacatg
caacaagaggaggtggacgatgaagatgaggaggacaccgaacgtccagctcacgtgaag
gaggagggcaacgaagaaccgtgcccccgagacgagaagagggaagacgacgagaggaaa
agcaaaggtccgtcatccgtgcagacgagctcgttgcagtttctacccacccacgagaga
cccaagcaggccagcaaattcgacaagtttcccctgaaggtagtacgaaagacagaccca
tttgttgcckccaaatccagcagtcatggtaaagtgcaagaatttgacagtgggctgmtt
cactggagtgctggaggcggagactcgacggaacacatccagactctatttgagccacgc
aaagacttcttggagccacgagagcgaatacccgttcctgcggctctattaaagcgacgg
ctcctagacgaagacatacgggaacattgtttgcctgccgaggaagaaaaaaggaagcaa
gacgaagaagaaaggcaaaagcaggcatctttgtcggaaaaatccacagactckgagaag
gccagctctgtggttagcagcgacgaagagaggcagtcagattcagacacaaagccagct
gagaaagattctaaaagccatcaggagaataataggtccgttctttcttctggaagtatt
ttagcccaacaggcacaagtgactggcaccatcctggaggatgagcctcacagtaaagac
gaaggacctcttgttacgctggcgagctggcaggattcgttagcccgccgctgcatctgt
gtttcaaatataatccgcagcctgtcgttcgtgccgggcaatgaccacgagatgtccaaa
catcccggtctgctgctgatgctcgggcggctgatcctcctccaccactggcaccccgag
cgcaaacaggccccgctcacatacgagaaagacgaggattccgacgagggagtgggccaa
aaggacgagtggtggtgggactgcttggagctcctgagagaaaacaccttrgtcacattg
gcaaatatttcaggccagctggacctctccgtctacactgagagcatctgcttgcccctg
ttggatggtcttctccactgggctgtctgtccttcagcggaggcccaagaccccttcccc
actctgggaccccacagtgcgctgtcccctcagaggctggtcctggaaacgctgagcaag
ctaagcatccaagataacaacgtggacctcatcttggccaccccgcccttcagtcggttg
gagaagctctacgggaacctggtgcggctaatcggagaccggaaggtcgctgtctgcagg
gagatggccgtagttctgctggccaacctggcccagggcgacactacggcggcccgagcc
atcgctgttcagaagggcagcgtgggcaatctgctgggcttcctggaggacagcctggcc
gccacccagcttcaacagagccagagctctctgctgcacctccaggggatgcccttcgag
cccaccagcccggacatgatgcggcgagctgcccgggctctgctcgccttggcgaaggtg
gaggagaaccactcagaattcacactacacgagtcccggctcctcgacctgtccgtgtct
ccgctaatgaactcgctggtttcccacgttatctgtgatgtactctttttgatcggccaa
tcgtga
DBGET
integrated database retrieval system
