Austrofundulus limnaeus (annual killifish): 106524244
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Entry
106524244 CDS
T06063
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04510
Focal adhesion
alim04512
ECM-receptor interaction
alim04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106524244
04518 Integrin signaling
106524244
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106524244
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106524244
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106524244
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
106524244
NCBI-ProteinID:
XP_013873422
UniProt:
A0A2I4C099
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSVVRCQEEDDQEAGGCTHDAQQYNDKDVWKPEPCRICVC
DSGAVLCDEIFCEEMKECTNPIIPSGECCPICPADATAPIETVGVKGQKGEPGEIADVVG
PRGPAGPMGPPGEQGPRGEAGAKGDKGNPGPRGRDGEPGTPGNPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGSPGEAGEPGPAGPMG
PRGPPGPSGKPGSDGESGKPGKPGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ETGAAGAKGESGSAGENGSPGAMGPRGLPGERGRPGAAGSAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGAKGEAGPTGARGAEGQQGPRGEAGTPGSPGPAGAGGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGLKGESGPKGELGPAGPQG
PPGPAGEEGKRGARGEPGAAGPNGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAG
PKGATGDPGRTGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLIGRPGLRGLAGKDGETGPAGPPGPSGPAGERGEQGQPG
PPGFQGLPGPAGSPGEAGKPGDQGVPGEGGAPGAAGPRGERGFPGERGGAGPQGIQGPRG
LPGTPGTDGPKGAIGPAGAPGSQGPPGLQGMPGERGAGGIPGAKGDRGDNGQKGPEGAPG
KDGARGLTGPIGPPGPSGPNGAKGETGPTGPTGAPGVRGAPGDRGELGPPGPAGFAGPPG
ADGQPGAKGENGESGQKGEAGASGPQGPSGAPGPVGPTGVSGPKGARGAQGPPGATGFPG
AAGRVGPPGPNGNPGSAGPAGPAGKDGPKGVRGDAGLPGRAGDPGLRGPAGPPGEKGEPG
EDGPPGADGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGSAGDRGPPG
PVGPPGLTGPSGEPGREGTPGSDGPPGRDGAIGIKGERGNTGPAGAPGAPGAPGAPGPVG
PLGKQGDRGEAGAQGPAGPPGLAGARGMAGPQGPRGDKGEAGEAGERGQKGHRGFTGLQG
LPGPPGPAGDSGTAGPAGPSGAKGPPGPVGPAGKDGSNGQPGPIGPPGPRGRSGETGPAG
PPGNTGPPGPPGPPGPGIDISAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDSTLK
SLNNQIENLRSPDGTQKNPARTCRDLKLCHPEWKSGDYWVDPNIGSTADAIKVFCDMETG
ETCVYPSIASVPRKSWWTSKSKDRKHVWFGETMSGGFHFSYAQDGPAAIAASVQLTFLRL
LSTEASQNLTYHCKNSVAYMDQATGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDGCKS
HTGRWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaagaactgttctgctacttgtagcatcccaagttgtttta
ctatctgtggttcgatgtcaggaggaggacgaccaggaggcaggcggctgcacccatgac
gcccagcagtataatgataaggatgtgtggaagccagagccgtgccgtatctgtgtgtgt
gacagcggagcggttctgtgcgatgagatattctgcgaggagatgaaagagtgcaccaac
cctatcatcccatctggagaatgctgccccatctgccccgctgatgccactgcccccatt
gagacggtaggcgttaagggccagaaaggagaaccgggagagattgcagatgttgtagga
ccaagaggaccagccggccccatggggcccccaggcgagcagggaccccgaggagaagct
ggcgctaagggtgataagggaaatcctggacctcgaggaagagatggtgaacctggcaca
cctggaaaccctggaccccccggcccacctggaccaccggggcttggaggcaactttgct
gctcagatggctggaggcttcgatgagaaggctggaggagctcagatgggcgtgatgcaa
ggaccgatgggccccatgggtccccgtggtccccctggaccttctggagctcccggacca
caaggtttccaaggctcccctggagaggctggagagcctggtccagctggaccaatggga
cctcgtggaccacctggaccatctggaaaaccaggaagtgatggtgaatctggtaaacct
ggcaaacctggtgagcgtggacctgcagggcctcagggagctcgtggattccctggaact
cctggacttcctggaattaaaggacacagaggtcatcctggtctggatggagctaaggga
gagacaggagcagcaggagccaagggtgagtctggttctgctggagagaacggttccccc
ggagcgatgggcccacgtggtctgcctggtgagaggggacgtcctggagctgctgggtct
gcaggcgctcgtggaaatgatggtttgcctggtcctgctggtcctcctggcccagtcggt
cctgctggagcacccggtttcccaggatccccaggagccaagggagaagctggtcccact
ggtgcccgaggagctgaaggccagcagggtccccgcggagaagctggtacaccaggatct
cctggacctgccggagcagggggtaacccgggtaccgacgggattcctggagccaaagga
tctgctggcgctcctggtatcgccggtgctcctggattccccggccctcgtggaccacct
ggacctcagggagcaactggacctctggggcccaaaggacagtctggggatcctggtcta
cctggactgaaaggtgaatctggaccaaaaggagagcttggccctgctggtcctcaaggt
cccccaggtcctgctggagaagagggaaagaggggcgccagaggagaacctggagctgct
ggaccaaacggacctccaggagaaagaggagctccaggaaaccgtggtttccccggtcaa
gatggtctggcaggagctaagggcgctcctggggatcggggcgttcctggtgccgctggg
cctaaaggtgctacaggagaccctggacgcacaggagagtctggtctacccggagccaga
ggactcactggtcgtcctggagatgctggtcctcaaggcaaagttggaccctctggtgcc
cccggtgaggacggtcgtcccggtccacctgggcctcagggagctcgcggacagcccgga
gtgatgggattccctggaccaaagggcgccaatggtgaacctggaaaagcaggagaaaag
gggcttataggtcgtcctggtctgagaggtctggctggaaaagatggtgagaccggacct
gccggacctcctggtccttctggacctgctggagagagaggagagcaaggacagcctgga
cccccaggcttccagggtctgcctggaccagctgggtctccaggagaggctggaaaacct
ggagatcagggtgttcctggagaaggtggagctcctggagctgctggacccagaggtgag
cgtggcttccctggtgaaagaggtggtgctggtccccagggtattcagggaccccgtgga
ctgcctggaacacccggaactgatggacccaagggggcgattggaccagctggagctcct
ggatctcagggaccccctggcctgcagggtatgcctggagagagaggagccggtggaatc
cctggagccaagggagacagaggtgacaacggacagaaaggacctgaaggtgctcctgga
aaggacggcgcgaggggtttgactggtccaatcggtcctcctggtccatctggacccaac
ggagctaagggtgagaccggacctacaggacccaccggtgctccaggtgttcgaggtgct
cctggtgatcgaggtgagctcggtcctcctgggcccgccggctttgctggacctcctggc
gcagatggtcagccaggtgccaagggagagaatggtgagagtggacaaaagggagaagct
ggtgcttctggacctcagggaccatctggagctcctggacctgtgggacctactggcgta
tctggacccaagggagcacgtggtgctcaaggacctcctggagccacaggtttccccggt
gctgctggcagagtcggacctccaggtcctaacggtaaccctggttctgccggtcctgct
ggccctgctggtaaagacggtccaaagggtgtgcgtggtgatgcaggtctcccgggcaga
gcaggagaccctggccttcgtggacccgcagggcctccaggagagaaaggagagcctgga
gaggatgggcctcctggtgctgatgggccttcaggtcctcagggtctggcaggatctcgt
ggtattgttggtctgcctggtcagcgcggagagagaggcttccctggtctccctggaccc
tctggagagcctggtaaacagggagcttctggtagtgccggtgaccgtggacctcccgga
cctgtaggaccgcctggacttactggaccttctggagaaccgggcagagagggtactcct
gggtcagatggaccccccggtagagacggggccattggaatcaagggagaacgagggaac
accggtccggctggcgctcctggagctcctggtgctcctggtgcccctggacctgtcgga
ccccttggcaagcagggcgacagaggagaggctggggctcaaggacctgcaggaccccca
ggactagctggtgctcgaggaatggctggaccccaaggaccacgtggagacaaaggagag
gctggtgaggctggagagagagggcaaaagggtcaccgtggcttcaccggtctgcagggt
cttcctggacccccaggtcctgctggagactctggcactgccggacccgctggaccaagc
ggagcgaagggaccacctggaccagttggacctgctggcaaagatggatctaatggacag
cctggccccatcggaccccctggacctcgtggacgttctggagaaactggtcctgctggt
cctcctggtaataccggaccccctggtcctcctggtccaccaggcccaggcattgacatc
tctgcctttgctggcctgggccagactgagaagtcccccgatcctctcaggtacatgagg
gccgacgaggcctccagctctctgaggcagcatgacgtcgaggtcgactccacgctcaag
tccctcaacaaccagatcgagaacctgcgcagtcccgacggcacccagaagaacccggct
cgcacctgcagagacctcaaactgtgtcacccagagtggaagagcggcgattactgggtg
gatcccaacatcggcagcacggcggacgcaatcaaggtcttctgcgacatggagacagga
gagacctgcgtctacccgagcatcgcctcggtaccaaggaagagctggtggaccagcaag
agcaaggaccgcaaacacgtctggtttggagagaccatgagtggaggatttcacttcagt
tacgctcaggacggccctgctgccatcgctgccagtgtccagctgaccttcctgaggctt
ttgtccactgaagcatcccagaacctcacgtatcactgcaaaaacagtgtcgcctacatg
gatcaagccacaggaaacctgaagaaggctttgctgctgcagggctccaacgacgtagag
atccgtgccgagggcaacagtcggttcacctacagcgtgttggaggacggctgcaagagt
cacacaggccggtggggcaagaccgtcttcgagtacaaaacacagaaaacctcccgtctg
ccgatcgtagacattgctcctatggacatcggaggagcagatcaggagttcggagtggat
gtcggcgccgtctgcttcttgtaa
DBGET
integrated database retrieval system
