Austrofundulus limnaeus (annual killifish): 106524458
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Entry
106524458 CDS
T06063
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04382
Cornified envelope formation
alim04510
Focal adhesion
alim04512
ECM-receptor interaction
alim04518
Integrin signaling
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106524458 (col4a5)
04518 Integrin signaling
106524458 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106524458 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
106524458 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
106524458 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
alim04147
]
106524458 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106524458 (col4a5)
Exosome [BR:
alim04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106524458 (col4a5)
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106524458 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106524458
NCBI-ProteinID:
XP_013873722
UniProt:
A0A2I4C141
LinkDB
All DBs
Position
Unknown
AA seq
1690 aa
AA seq
DB search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NT seq
5073 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcagccggaggtgctcggtgccggggctggcggtggtggctctggtcctgctg
agcgccgcggtgcagagagccgaggctgcggcttgccatggatgtggaggttccaaatgt
gactgcagtggagtaaaaggagcgaagggtgagaggggtttaccgggtctcactggacag
ccgggcgtcccaggcttccccggacctgaaggacccatcggacctagaggggagaaggga
agtgatggacctcaaggactaactggtccgaagggaataagaggacctcctggattacca
ggatttcctggaatgccagggcaacctggtctaccaggacaagatggtcctccaggccca
agaggagtgccaggttgcaacgggacaaaaggtgaacagggttttccaggaagtccagga
atccccggacagccaggtttactgggtccacctggtcttccaggagaaaagggcgaccca
ggtgatgtgatttccaccaatcggtttggagaaaaaggagcagtgggtttacctggatta
ccaggagccccgggtcgttctggacccccgggtttacaaggtccaattggccctccagga
cccagaggatatgagggtcttcaaggtcctcccggcccccctggaccgaagggaaacatg
ggtttgaacttcgaaggacgcaaaggagaaaagggtgaaccaggtttgccaggaccccct
ggtcctccaggacaagtaggaacaggagaacagaagagaccaccagagtcagagattcaa
cgaggggaaaagggtgaccaaggacctcctggcccccctggtgatccaggttttccaggt
ccacctggttcttcaggtggacagaaaggagagaaaggagagcagggagaagtaggcaaa
cgaggaaagtcaggcaaagacggagacccgggcctgccaggaagccctggactcaaagga
gaaccaggcctgccgggtcctccgggcagggatggagaaagaggactaaaaggtgatcga
ggataccccggtcctccgggagttgtagccggtcctctaaatggaggtattgttggccct
aaaggtgagcctggtttatctggaacacctggaatcaaaggagatagaggaccaccaggt
tttacaggacctccaggatcaccagggcttccaggtataggtgggagtggtcctcctgga
cctccaggtttcccaggagacaagggtcaaaaaggagtccctggagagccatcaatttct
ttgcctggtccccctggacggccggggattcctggggttgctggtccaccaggtccccct
ggacttccaggtttttccagctcaggccaagcctgcattcctggggcaccaggccttcct
ggggtccagggtgaaagaggctatcaaggagagcaaggccagaaaggtcagaagggtgag
acttgtgtgaattgcgttggaggaaccaatcccgttcctggaccccaaggacctccagga
cagcctggattacctggacaacccggcccacaaggtatcaagggagaaagaggattccct
ggaaatcttggtcttgttgggcctcctggtaggcctggtcctctcggtgctccaggcctc
ccaggagaaaagggagacccaggggatgcccttacagtccctggtcttaaaggtgcaaag
ggtgacactggctttcctggatcacccggtctgcctggtctggatggccaacctggacgt
gatggccaacctggacctcctggtcccaagggagtgcctggctctttattgctgaaaggc
gatcgagggcttcctggtgagccgggtttgcctggcattcctggagacagaggtccccca
ggtccccctggatttggacttccaggaccagcaggagataaaggagttcaaggcatctcg
gggagacctggaggtcaaggtttacctggtcctaaaggcgaaccaggacttacaatatca
gataaaggtctaccaggacccaaagggcaggatggtgagccaggactgccaggtgcacca
ggttccccaggtctgcctggtcaacctggttttacaggtttacaaggaccaaaaggtgat
cctggattatcaggaattgggctcccaggtccttcaggggctaaaggattcccaggtatt
gctggtcagccaggagctcctggaaaaccagggaggccaggaatagatggatttcctggc
cagcctggccttcctggacccaagggtgaacccgggtttgggcttcccggtcctccaggt
ttaccaggacagcctggacctaagggtttcacaggaccaaaaggagaccctggtttccct
ggaaaccctggtcctccaggtcggcctggatttgacggacctacagggtcaaaaggtgaa
cccggtacacctggaatacctggcggtcgtgggccacctggattgcccggtattggttta
ccgggacctgcaggtcccccaggtcctccaggtccattaggaccaccaggctatccggga
gcaaatggaccaaaaggagatcctggtcccccaggtctagacatcccaggtctaccagga
gacagaggaagtcctggtttcccaggtctcccaggatcaataggacctccaggaccccct
ggaggacctgggcgggatggaataccaggaccgttaggtcagaaaggagacatgggtcct
atgggacctccaggacctcctgggggacctggcgcaccaggaggacctggcctggcagga
ttaaaaggcgaaccaggattcccaggtagagatggtgcaccaggcgttagtgggcttaaa
ggcgagaggggagatactggacctctaggacccccgggaatctttgtgccagcaaaggga
gaaaaaggagatcgtggactcccaggtctaccaggacagtcgggaccaaaaggtatctct
ggtcttcctggtgaccctggagtagcaggagaagatgggctccctggaattcccggacca
ccaggtcctaaaggagagcctggaattccaggtgttccaggttcttctgggcttccagga
ccaaaaggcaacatgggagaaatgggaattccaggacctccagggctgaagggtggattc
ggttccccaggtaggccaggaccgcaaggtcaggcaggaattcctggcagcccgggaccc
aaaggggacccaggttctgctggcgtcggaccacctggaattcaaggactgaagggtgag
ccaggccagccaggatacccaggaagtcctggactaaaaggaaccccgggacaacctggt
ctccctggtttacctggcatacctggtgagaaaggtgaccccggactcccaggatttcaa
ggtccccctggtggccctggtcctaagggtttcgatggcgggcctggtgcccctggtctc
ccgggaaccctaggtaggcaaggagagtctggtcgaccaggaccaccaggactgatcgga
gagaaaggccaaccaggtcgagatgggatcccagggccggccggagtcaaaggagagcca
gggattcctggttttggtggtccaggcccctcagggcttccaggcccaccaggtgctaag
ggagacataggtcctcctggtcaacctggcactccaggtttccctggtatcaaaggagac
cccggcctgcctggtacccaaggccccccaggttctactggccctccaggacctccagga
ctgcctttgcaaggccctaaaggaaatcaaggaccccctggaccacctggaagaggaggc
ccctcaggtcctccaggtccacctggcccagaaggtccccgtggactcccaggaagtggc
ggtgtgaagggagagaagggtaatcccggtattcctggccagcctggatttgctggacaa
aaaggggacactgggtttccgggatctccgggcgtccctggtattcctggtgtccctggt
gggaagggagatatcggagcatctggtcctcctggattccctggaatgaagggggagcca
ggacaacctggcataagtggtcttcctggagatcctggcaatcctggaagtcctggtctt
cctggtgaccctgctcaacttccaccttctacaattgtgaaaggtgagcgagggccccca
ggtccaagggggttccctgggtcccaaggcctgcctggtcctcctggacctgaaggatcc
ccaggtccacgtggtgagactggggatcctggttctcctggtccaattggtttcaatggt
ccacctgggaagaaaggtgacactggacctgctggtcagcctggtctgcgtggcaacact
ggtccccccggttcagacggaccacagggtccccccggttttccagggtcagtctcagca
gcccacggtttcctcatcaccagacacagccagactgaagaagtgcccccgtgccctgcc
gggactcagcccatctatgaggggtactctctgttgtacgtgcagggcaacgagagggcg
cacggacaggacctcggcacagccggcagctgcttgagcaggttcagccccatgcccttc
atgttctgcaacatcaacaacgtctgcaacttcgcgtcacgcaacgactactcctactgg
ctgtccacgccaaaacccatgcctatgtccatggaagctgtgaccggggcgaccatcgag
ccttacatcagcagatgtagggtatgtgaagctcccgctatggtgattgcagtccacagt
cagaccatccagatacctacttgcccaccagactgggaacctatgtggattggatactcc
tttatgatgcataccagcgcgggtgcagagggctcaggtcaggcgctggcctcccctggt
tcctgtctggaggagtttcgcagcacacccttcatagagtgtcatggccgagggtcgtgc
aactacttcagcaactcctacagcttctggctggctactgtggagcaatctgagatgttc
aggaaaccacagtcggagaccttaaaagcgggtaatctacgatcacgcatcagccgttgt
gtggtctgcatgaaaagaaccccgaggacgtaa
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integrated database retrieval system
