Austrofundulus limnaeus (annual killifish): 106524556
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Entry
106524556 CDS
T06063
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106524556 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
alim03041
]
106524556 (ddx46)
Enzymes [BR:
alim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106524556 (ddx46)
Spliceosome [BR:
alim03041
]
Complex A
U2 snRNP components
U2 related factors
106524556 (ddx46)
Complex B
106524556 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
106524556
NCBI-ProteinID:
XP_013873855
UniProt:
A0A2I4C1H8
LinkDB
All DBs
Position
Unknown
AA seq
1060 aa
AA seq
DB search
MGRESRHYRKRSSSRGRSGTRSKSRSPERRSKKDDRDRSRRDRSRSRDRRRSRSRDRKRA
RRSRSRDRRRSRSRDRKRSGSRNRTRRSRTASPAKSKKTDEKPKSKEKDNLHPVSDKKIK
EEKEDEKVEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELEEMKQGKKW
SLEDDDDDDEDFSAVVEADDDEETDGKGEGKEKDAKEVKKEESEKEETTPMEQQAEEDEV
DPLDAYMEEVKQEVKKFNIGAMKGNDKKGAMTVTKVVTVVKTKKLPHTHKKKGELMENDQ
DAMEYSSEEEEVDLQTALTGFQTKQRKVLEPVDHGKIQYESYRKNFYVEVPELAKMTPEE
VNSFRLELEGITVKGKGCPKPIKTWVQCGVSMKILSSLKKHGYEKPTPIQAQAIPAIMSG
RDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGPISVIMTPTRELALQITKECKKFS
KALGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVTYVVLD
EADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVV
CSDVEQHVLVIEEEKKFLKLLEILGHYQEKGSVIIFVDKQEHADALLKDLMKASYPCMSL
HGGIDQYDRDSIINDFKNGACRLMVATSVAARGLDVKQLILVVNYNCPNHYEDYVHRAGR
TGRAGNKGYAYTFITEDQARYAGDILKALELSGSPVPPELEQLWGSFKDQQKAEGKSIKS
SSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESMFNSKKRVKD
LSAPGAAAGAAGGVAPTTAAPGGLPGLAPTSAGNIQKLEMAKRLALKINAQKNLGAEAQD
VMQQATNAILRGGPIVTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEERQAAEQAETVRR
YEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIE
SASELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtgaatcgagacactacaggaagcgttcgtcgtctcggggccggtcgggaacc
cggtccaagagtcgctccccggaaagacgctccaagaaagacgaccgagaccggagcagg
agagacaggtcgcggagccgagaccgccgaaggtcccgatccagagatagaaaaagagcc
aggcgttccaggagcagagaccgaagaaggtccagaagccgggacaggaaacggtccggg
agcaggaatcggacacgcaggtctcgaactgccagcccggcgaagagcaagaaaactgat
gaaaagccaaagagcaaagagaaagacaaccttcatcctgtttctgacaaaaagattaaa
gaggaaaaagaagatgagaaggttgaagatcaagactttgaccagaacaaactggaggag
gagatgaggaagaggaaggagagggtggagaaatggagggaagagcagaggaagaaggcc
attgaaaacatcggggagatcaagaaagagctggaggaaatgaagcagggcaagaaatgg
agccttgaggacgacgacgacgatgacgaggatttttcggctgtggtggaggctgacgat
gacgaagaaacggatggaaagggggagggcaaggagaaggatgcaaaggaggtgaagaaa
gaggaaagcgagaaggaagagacgactcccatggagcagcaggccgaggaggacgaagtg
gatcctctggatgcttacatggaggaagtcaaacaggaggtgaagaagttcaacatcgga
gcaatgaagggaaacgacaagaaaggagcaatgaccgtaactaaagtggtgacggttgtt
aaaactaaaaagttgcctcacacacacaagaagaagggtgagctgatggagaacgaccag
gatgccatggagtactcgtcagaggaggaggaggtggacctgcagacggctctgacaggc
ttccagaccaaacagagaaaagttctggagcccgtcgaccacgggaagatccaatatgag
tcgtaccgcaaaaacttctatgtggaggttcctgagctggccaagatgacaccagaggaa
gtaaactcattcagactggaactggaagggattactgtcaaagggaagggttgtcccaaa
cccatcaagacctgggtccagtgtggggtgtccatgaagatcctgtcctccctgaagaag
catggctacgagaagcccacaccgatccaagctcaggccatccctgccatcatgtcgggt
cgagacctcattggcatcgctaagaccggaagtgggaaaaccatcgctttcctgttgccc
atgttccgacacatcatggaccagagacccctggaggaatctgagggacccatctctgta
attatgactccgaccagagagttggctttacagatcacgaaggagtgcaagaagttctcc
aaagctctgggactgagggtggtgtgtgtttacggaggcacgggaatcagcgagcagatt
gctgagctgaaaagaggagcagagatcatcgtctgcacgccggggagaatgatcgacatg
ttgggggccaacagtggccgggtcaccaacctgcgcagagttacatatgtggtgctggac
gaagcagacaggatgtttgatatgggcttcgagccgcaggtgatgcgtattgtggacaat
gtgcgtccggaccggcagacggtcatgttctcagccaccttccccagagccatggaggct
ctggctcgcaggatcctgtccaagcccatcgaggtgcaggtgggaggtcgcagcgtggtc
tgctctgacgtggagcaacatgtgctggtgattgaggaggaaaagaagttcctaaagctg
ctggagattttgggtcactaccaggagaagggatcagtcattatctttgtggacaaacag
gaacacgcagacgctctgctcaaggacctgatgaaagcctcgtacccctgcatgtctctg
cacggaggaatcgatcagtacgacagagacagcatcatcaacgactttaagaacggagcc
tgtcgcctgatggtggccacctctgtggcagccagaggtttggatgtcaagcagctcatc
ctggtggtcaactacaactgtcccaaccactacgaggattatgtccacagagcgggacgc
accggcagagcaggcaacaagggttacgcctacaccttcatcactgaggatcaggcccgt
tacgctggagatatcctcaaggctttggagctgtctggatctcctgtccctccagaactg
gagcagctttggggctccttcaaggaccagcaaaaagcggagggtaagagcattaagagc
agcagtgggttctcaggtaaaggctttaagtttgacgagacagaacatgctttggccaac
gagaggaagaagctgcagaaagctgcacttggattgcaggactctgatgatgaggatgga
gccctggatattgaggagcaaattgaaagcatgtttaattctaagaagagggtgaaggat
ctgtctgctcctggagcagctgctggtgcggctggaggtgttgctcctacaacagctgca
cctggagggcttccgggcttggcgccgacgtctgcagggaacatccagaaactggagatg
gccaaaaggctggctctcaagatcaatgctcagaagaacttgggcgctgaggctcaggac
gtgatgcaacaagccaccaacgccatactgcgcggcgggcccatcgtgacgccgtccgtg
tcagccaagaccatcgcagagcagctggcagagaagatcaacgccaaactgaactacacg
cccgtggagaagctggaggaggagcggcaggcggctgaacaggccgagaccgtcaggaga
tacgaagaggagctggagatcaacgacttccctcagactgccaggtggaaggtgacatct
aaggaggctttgcagaggattggtgaatactctgaagctgccatcaccatcagggggaca
tatttccctcctggaaaagagcccaaagagggagaacgcaagatctacctggctattgag
agtgcaagtgagctggccgtgcagaaagccaaaacagaaattacacgactaatcaaggag
gagctcatcagattacaaaattcctaccaaccaacaagcaaaggccgatacaaagtgttg
tag
DBGET
integrated database retrieval system
