Austrofundulus limnaeus (annual killifish): 106524942
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Entry
106524942 CDS
T06063
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03440
Homologous recombination
alim03450
Non-homologous end-joining
alim04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
106524942 (rad50)
03450 Non-homologous end-joining
106524942 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
106524942 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alim03032
]
106524942 (rad50)
03400 DNA repair and recombination proteins [BR:
alim03400
]
106524942 (rad50)
DNA replication proteins [BR:
alim03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
106524942 (rad50)
DNA repair and recombination proteins [BR:
alim03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
106524942 (rad50)
BRCA1-C complex
106524942 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
106524942 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SMC_N
SbcC_Walker_B
ABC_tran
AAA_29
zf-met
AAA_16
AAA_22
AAA_13
Motif
Other DBs
NCBI-GeneID:
106524942
NCBI-ProteinID:
XP_013874445
UniProt:
A0A2I4C373
LinkDB
All DBs
Position
Unknown
AA seq
1312 aa
AA seq
DB search
MSRIDKMSILGVRSFGIEDKDKQVISFRPPLTVLVGPNGAGKTTIIECLKYATSGELPPG
SKGGAFVHDPKDAHETDVRAQIKLLFTDVNGEKVTIQRSMSCTQKAKNYSFKSLDQVISR
WKNGEXVSLPAKCAEVDQEMISALGVSKPVLNHVIFCHQEESNWPLSEGKALKEKFDSIF
AATKYIKALETMRQLRLKKGQTVKECQVELRYLKLNKEKAQQIRDTVATKEAQLTASKDS
IQQIESQIDPLENRLTDFDLKLGKVMKLDNDIKALESRKKQMEEDNKELEETMEQVFQGS
DEELQEVYQNHQRTVKEKERRLTECQRELERAGRECQRLNRVKAELLVEQGRLQLEADHH
IQSVKNRDAQVRSLSTYLEMDGYDRPPFTSLQLGGFHQQVTQRLEQEKVTFDELMADLQE
KEQQKQQAIDEMRDKKAGLERTVELKRDMQGKKQQELRNVRADLQRLEGSTSRLQELENE
LAKVERELQQAVQRSNVEELKTEXEQLQKEKSELDRAQRQLDQEIQLLNMHTTARTQMEM
LKRDKTEKDEQVRKIKSRHGDELVSLLGHFPNKRELEDWIYSKSKEINSTRDRLAKLNKD
LASSEQNKNHIVAELRKKEQQLVSDEEKFFSVCGSQDLDQDLSKLQEDLEKVSKQRAMLA
GATAVYTQFISQLTEEREPCCPVCQRTFPSESDLQEVINDMQSKLRLVPDKLKNTEQDLK
KKEKKRDEMISLKPVRQSIVQFQEKELPELRNRLQAVNREIERLKTVVDEQETVLKTLMS
EEETAKACLQDISLMDRYLMDLKELERKIAQHTAKLQGVDLTRNIQQVSQEKQETQHKLD
TISSKMELNRKLIQDQQDQIQMLKSAVNETRSDNLKLSSDMQKQQQLEEQCVEFTTEIQA
LTRDIRGAKEQLLPLSATLEKLQQEKQELAERKRQKHEEGQEKIRAIKERVKKIIAFEQE
ITKYKDDGKDAYKEQKESELQETHTLLHEAERQKEKINKEMGNIRQDIDTQKVQERWLQD
NLTLRKRNEELKEVVTKREALLKEMGSMQVLQLRRERREAENKLEDLKKSRSIALGRQKG
FEEELLTYRKELREEQYDKADELYKNKMITMRTTELVIKDLDIYYKALDQTIMKFHSMKM
DEINKIVRELWRSTYRGQDIEYVEIRSDVDENSSAGVKRRVYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKNRSRQR
NFQLLIITHDEDFVELLGRSSYIEHFYRIRKNQDQNSEIIKCSISSLSSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaggatagataaaatgagcatcctgggggtcaggagcttcggaattgaggacaaa
gacaaacaagtcatctcttttcggccacctttaactgttctggttggacccaacggagca
ggaaaaacgacaattattgagtgccttaaatatgctacatcaggagaacttccgcctggt
tctaaaggaggtgcttttgttcatgatccaaaggatgcccatgagacagatgtgcgagct
cagattaaactcctcttcacagatgtcaatggagaaaaagtcaccattcaacgctccatg
tcttgcactcagaaagctaaaaactactccttcaaaagcttagaccaggtcatatcaaga
tggaaaaatggtgaaayagtgagcttacctgccaagtgtgccgaggtggaccaggagatg
atttctgcattgggagtatccaagcctgtgctgaatcatgttatcttctgtcaccaagaa
gagtctaactggccgctaagtgagggcaaagctctcaaagaaaaatttgactccatattt
gctgcaacaaagtatatcaaagctctggagacgatgcgtcagctgcgcctcaaaaaaggt
cagacagtcaaagagtgtcaggtggagctgcgttatctgaagctgaacaaagagaaggct
cagcagatcagagacactgtggccaccaaggaggctcaactgacggcctccaaagacagc
atccagcagattgagagccagattgacccacttgagaatcgacttacagattttgacttg
aaacttggaaaagtgatgaagctggacaatgatataaaagctttagagagcagaaagaaa
caaatggaagaggacaataaggagctggaggaaacaatggaacaggttttccagggatca
gacgaggaactgcaggaagtttaccagaaccaccagaggactgtgaaggagaaagaacgg
aggctgacggagtgtcagagggagctggaaagagctggccgggagtgtcagagactcaac
agagtcaaggctgagctcttggtagagcaaggtcgtttacagctggaagctgatcaccac
attcagagcgtcaagaatcgggatgcacaggttcgttctctatcgacctacctggaaatg
gatggttacgaccgtccgcccttcacctctctgcagcttggaggcttccaccaacaagtc
acacaaagactggagcaggaaaaagtgacttttgatgagcttatggctgatctacaagaa
aaggagcagcagaagcagcaggccattgatgaaatgagggataagaaggccggcctggag
agaacagtagagctgaagagagacatgcagggaaaaaaacagcaagaactgaggaacgtc
agggcagacctgcagaggcttgagggttcaactagtcggctacaagagctggaaaatgaa
ttggctaaagtggagcgggagctgcagcaagccgttcagcgctccaacgtggaagagctg
aagacggagawtgagcaacttcaaaaagaaaagtctgaacttgaccgtgcacagaggcag
ctcgaccaagagattcagctgctcaacatgcacacaactgcacgcacacagatggaaatg
ttgaaaagagataaaacagaaaaagacgagcaggtgcgtaagattaagtctcgccatggc
gatgagctcgtgtccctcctgggtcattttcccaacaagagagagctggaggattggatc
tattctaagtcaaaggaaatcaatagcaccagggaccgacttgcaaaactcaataaggat
ctggcttcaagtgagcagaacaaaaatcatattgttgctgagctgcgtaagaaggagcag
cagttagtgagtgatgaagagaagttcttcagtgtttgtggcagtcaggatctggatcag
gacctgagcaaactgcaggaagatttggagaaagtatccaaacaaagagccatgttagca
ggagccacagcagtttacactcagttcatcagccaactgacagaggagagggaaccctgc
tgccctgtgtgccagcgaacctttccttcagagtcggatctgcaggaagttattaacgac
atgcagtcgaagctacgcctggtgccagacaaactgaagaacaccgagcaggacctgaag
aaaaaggagaaaaagagagatgagatgatatctcttaaacctgtgaggcagtccattgta
cagtttcaggagaaggagctgccggagctgagaaaccgtcttcaggctgttaacagagaa
atcgagaggctcaaaactgttgtggacgagcaggagactgttctcaagacattgatgtct
gaggaggaaacagccaaggcctgcctgcaggacatctctcttatggacagatacctgatg
gacctaaaagagttggagaggaaaatagctcagcacacagcaaagctccagggcgtcgat
ctgaccagaaacattcagcaagttagtcaggagaaacaagaaactcagcacaagttggac
acaatctccagcaaaatggagttaaaccgtaagcttatccaggaccagcaggatcagatc
caaatgcttaaaagtgcagtgaatgagacgaggtcagacaayctcaagctcagcagcgac
atgcagaaacagcagcagctggaggagcagtgtgtcgagttcaccacagagatccaggct
ctgaccagggacatcaggggggcaaaggaacaactgttgcctctgtctgcaactctggag
aagttgcagcaagaaaaacaagaactggcagagcgcaagagacaaaaacatgaagaaggg
caagaaaagatcagggccattaaagagagagtgaagaaaatcattgcattcgaacaggag
atcactaaatacaaagatgatggaaaagatgcgtacaaagagcaaaaagagtctgagctt
caggaaacccacactctgctccatgaagctgagaggcaaaaagaaaaaatcaacaaagag
atgggaaacattcgtcaggacattgacactcaaaaggtccaggagcgctggttgcaggac
aatctgacgttgaggaagcgtaatgaggagctgaaggaagttgtgactaaacgtgaagct
ctcctgaaagaaatgggcagcatgcaggtcttgcagctacgccgagaacgccgtgaagca
gaaaacaagctagaagatttgaagaagagccgcagcattgctctgggtcgtcagaaagga
tttgaagaggagctgctaacttacagaaaagagttgcgagaggaacaatacgacaaagct
gacgagctctacaaaaacaagatgatcacaatgaggaccactgagttggtcattaaagac
ctggatatctactacaaagctcttgatcaaaccatcatgaagttccacagcatgaagatg
gatgagattaataagatcgtcagagaactgtggcgcagcacctacaggggtcaagatatc
gaatatgtggagatcaggtctgatgtggacgagaactcatctgctggagtgaaacgcagg
gtttacaactacagagttgttatggtgaagggagacacagctttggatatgagaggacgc
tgcagtgctggtcaaaaggtgttggcgtccctgatcatccgtctcgccctggcagagact
ttctgtctgaactgtgggatcctggccctggacgaacctaccaccaacctggaccgagag
aacattgagtcgttggcacatgctcttgtggaaatcattaagaatcgctctcgccagaga
aacttccagctactcatcatcacccacgatgaagactttgtggagctgctgggccggtcc
agctacatcgaacacttctatcgcatccgtaagaaccaggaccagaactcagaaatcatc
aagtgtagcatctcctccctctcatcctacctccactga
DBGET
integrated database retrieval system
