Austrofundulus limnaeus (annual killifish): 106525315
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Entry
106525315 CDS
T06063
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03020
RNA polymerase
alim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106525315 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
106525315 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alim03021
]
106525315 (polr2a)
03400 DNA repair and recombination proteins [BR:
alim03400
]
106525315 (polr2a)
Enzymes [BR:
alim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106525315 (polr2a)
Transcription machinery [BR:
alim03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
106525315 (polr2a)
DNA repair and recombination proteins [BR:
alim03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
106525315 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
106525315
NCBI-ProteinID:
XP_013874959
UniProt:
A0A2I4C4Q7
LinkDB
All DBs
Position
Unknown
AA seq
1910 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKILRCVCFFCSKLLVDAN
NPKIKEILVKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEPQETEEDITKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDIILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETKAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQVFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVE
FQNVATLKPSHKAFEKKFKFDCTNERALRRILQEDVVKDVQTNAHVQSVLEREFEKMKED
REILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLII
VNGDDPLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFEWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLAVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NNDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TDDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
FHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYS
PTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSP
KYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSP
TSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5733 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagttcag
ttcggcatcatcagtccagatgaacttaaacgaatgtcagtgactgaggggggaatcaag
taccccgaaaccacagaaggaggacgtcccaaacttggtggccttatggatccraggcaa
ggggtcatagaacgcagcgggaggtgtcaaacctgtgcaggcaacatgacagaatgccca
ggtcactttgggcacatagagctggccaaaccagttttccacgtcggttttataacaaag
ataatgaagatcctccgatgtgtctgcttcttctgctccaaattgttggtggacgccaac
aaccccaagatcaaggaaatccttgtgaaatctaaaggacagcccaggaagcgtttaacc
cacgtttatgagctgtgcaagggtaaaaacatttgtgaaggaggcgaggaaatggacaac
aagtttggaatggagccacaggagacggaggaggacatcaccaaggagaagggccacggt
ggctgcgggcgctaccagccccgcatcagacgctcgggcttggagctgtacgccgagtgg
aagcacgtcaacgargactcgcaggagaagaagatcctgctgagtccggagcgcgtgcac
gagatcttcaagcgcatctcggacgaggaggacatcatcttgggcatggatcccaagttc
gcccgaccggaatggatgatygtcaccgtgttgcctgtgcctccgctggctgtgaggcct
gccgtggtcatgcaaggatccgctcgcaaccaggacgacttgacgcacaagttggcggac
atcgtcaagatcaacaaccagctgcgaagaaacgagcagagcggcgcggctgctcatgtg
atcgccgaggatgtgaagctgcttcagtttcacgtggccactatggtcgacaacgagctg
ccaggcctgcccagggcaatgcaaaagtctggccgccctctcaaatccataaagcagcgt
ctaaagggtaaggagggaagagtgaggggtaacctgatgggcaaacgtgtggacttctca
gctcgaaccgtcatcaccccggaccctaacctgcagatcgaccaagtgggcgtgccgcga
tccatcgcagcgaacatgacgttcccagagatcgttactccctttaatatygacagattg
caagagctggtacgaagaggcaacagccagtatcctggagcaaaatacatcatccgcgac
aacggagacagaattgacctgcggttccacccgaaaccaagtgaccttcatctgcagatc
ggctacaaggtggaaagacacatgtgcgatggtgacatcgtcatcttcaatcgacagcct
acactacataaaatgtccatgatgggccacagggttcggattctgccgtggtccacgttc
cgactcaacctcagtgtcaccacaccctacaacgctgactttgayggcgacgagatgaac
ctccacctgcctcagtctctggagacaaaggcrgagattcaagagctggccatggtgccg
cgtatgatcgtcacgccgcagtccaacaggcccgtcatgggtattgtgcaggacaccctc
acggctgttcgcaaattcaccaaacgagacgtcttcttagagaggggcgaagtgatgaac
ctcctcatgttcctttccacctgggatgggaaaatgcctcagcccgccatcctcaagccc
cgccccttgtggacaggcaagcaggtcttcagcctcatcatccccggtcacattaatgtg
atccgcacacacagcacgcaccccgacgaygaggacagtgggccttacaaacacatttca
cccggcgacaccaaggtgatagtggagaacggagagctgattatgggcatcctgtgtaag
aagtctctgggaacctccgccggttccctcgtccacatctcctacctggagatgggtcac
gacatcaccagactcttctactccaacattcagacggtggtcaacaactggctgctcatc
gagggtcattcaatcggtattggtgactccattgctgatgccaagacatacctggacatc
cagaataccatcaagaaagccaaacaggatgtgatagaagtcatcgagaaagctcacaac
aacgagctggaaccgacgcccggtaatacgttgaggcagacctttgagaaccaggtgaat
cgtatcctcaacgacgctcgtgacaaaacggggtcctcggcccagaagtctctgtccgag
tacaacaacttcaagtccatggtggtggccggctccaagggctcaaagatcaacatctca
caggttattgccgtggtggggcagcagaacgtggaaggtaagcgaatcccgtttggcttc
aagcaccggactctgcctcacttcattaaagacgactacggtcctgagagcagaggcttt
gtggagaactcctacctggccggattaacgccgacagagttcttcttccacgccatgggt
ggcagagagggtctgatcgatacggccgtcaaaacagctgagacaggatacatccagcgt
cgtctgatcaagtctatggagtctgtgatggtgaagtacgacgccacggtgcggaactcc
atcaaccaggtagtgcagctgcgctacggcgaggacggcctggcgggagagaacgtcgag
ttccaaaacgtggcgacactgaagccctcgcacaaggccttcgaaaagaagttcaagttc
gactgcaccaacgagcgagcgctgaggcgaatcctgcaggaggacgtggtgaaagacgtg
cagaccaacgcacacgtgcagagcgtcctggagagggagtttgagaagatgaaggaggac
agggagattctgcgagctattttccctaccggcgacagcaaggtggtgctgccatgcaac
ctggccagaatgatctggaacgctcagaagattttccgaatcaaccctcgaaccccaaca
gatctgaatcctctgagagtggttgagggcgttcaggagctgagtaagaagctgatcatt
gtgaacggcgaygaccccctgagcagacaggcccaggagaacgccacgctgctcttcaac
atccacctgcgctccacgctctgctccaaacgcatgacagaggagttccgcctttccacc
gaggcttttgagtggctgctgggcgagatcgagaccaagttcaaccagtccatcgctcat
ccgggtgaaatggtcggtgctctggctgctcagtcactgggagagccggccacacagatg
acactgaacactttccactacgccggtgtgtcggccaagaacgtaactctgggtgtgcct
cgtctgaaggagttgatcaacatctcaaagaggcccaagacgccctcgctggcggttttc
ctgctgggtcaggcagcgcgtgacgctgagcgggccaaggacatcctgtgtcgcctggag
cacaccacgctccggaaagtgactgccaacaccgccatctactacgacccaaaccctcag
aacacagtggtggctgaggaccaggagtgggtgaacgtctactacgagatgccagacttc
gacgtgacgcgcatttcaccgtggctgctgcgcatygagctcgaccgcaagcacatgacc
gaccgcaagctgaccatggagcagatcgcagagaagatcaacgcaggttttggagatgat
ctgaactgcatcttcaatgacgacaatgctgaaaagcttgtgctgcgaatccgaatcatg
aacaacgacgagaayaagttccaagaggacgaggaggtggtggacaaaatggacgacgac
gtgttcctgaggtgcatcgagtccaacatgctgacggacatgactctgcagggcatcgag
cagatcagcaaggtgtacatgcacttacctcagactgacaacaagaagaagatcatcatc
acsgatgacggagagttcaaggccctgcaggagtggatcctggagacggacggcgtgagc
ctcatgagggttctcagtgagaaggatgtggatcctgtcagaaccacctccaacgacatt
gtggaaatcttcacggttttggggattgaagcagtacgaaaggcgctggagagggagttg
ttccacgtcatctccttcgacggctcctacgtcaactaccgtcacctggctctgctttgc
gacaccatgacctgccgcggtcatctgatggccatcacccgtcacggcatcaaccgtcaa
gacacaggaccgctcatgaagtgttcctttgaagagacggtggacgtgttgatggaggca
tcgtcccacggagagtgcgaccccatgaaaggcgtgtcggagaacatcatgctcggccag
ctggcccctgcaggaacgggctgcttcgacctgttgctggacgccgagaagtgcaaatac
ggcatggagatcccgacaaacataccyggcatcagcgtggctggacccactggaatgttc
ttcggctcggtaccgagccccatgagcggtatgtctcctgccatgacgccgtggaacaca
ggggccaccccagcctacggtgcctggtcccccagtgttggaagcggcatgacccccgga
gcggcaggcttctctcccagcgcggcttcagatgcaagtggcttctctccaggttactcc
ccggcctggtcgcccacgccgggatctccagggtctccaggacctgccagtccatacata
ccctcaccaggcggagccatgtcacccaactactcccccacctccccygcctacgagccc
cgttcccccggcggctacaccccgcagagccccggctactccccgacgtcgccctcctac
tcccccacctctccctcctactctcccaccagccccaactacagccccacgtccccctcg
tactcccccacttcgcccagttactccccgacatctccgtcctactcccccacgtctccc
tcctaytccccgacgtctccgtcgtactcccccacctccccctcctactcccccacatct
ccgtcgtactcccccacctcgcccagctacagcccggcgtcaccaagctactccccgacg
tcccccagctactccccgacgtccccttcgtactcgccgacatcgccctcctattcgccg
acctcccccaactacaccccgaccagccccaactactcccccacttcgccgtcgtactcs
cccacctcgccgtcgtactcgccctccagtccccgctacaccccgcagtcgccgacctac
acgcccagctcgccgtcgtacagccccagctccccctcgtactccccgacctcgcccaaa
tacacgcccacctccccctcctacagccccagctccccggagtacacccccacctcgccc
aagtactcccccacctcgcccaagtactctccgacgtcgcccaagtactcccccacctct
cccacctactccccgacgaccccaaaatacagccccacctcgcccacctactcccccacc
tcgcccacctacacccccaccagccccaagtactcgcccacctcccccacatactccccg
acttcgcctaagtactcacccacgtctccgacgtactcgccgaccagtcccaaaggctcc
acctacagccccacctcccctggctacagccccacctcccccacctacagcccggccatc
agccctgacgacagtgacgaggagaacaactga
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integrated database retrieval system
