Austrofundulus limnaeus (annual killifish): 106525474
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Entry
106525474 CDS
T06063
Symbol
col16a1
Name
(RefSeq) collagen alpha-1(XVI) chain
KO
K24339
collagen type XVI alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106525474
NCBI-ProteinID:
XP_013875186
UniProt:
A0A2I4C5A7
LinkDB
All DBs
Position
Unknown
AA seq
1599 aa
AA seq
DB search
MWLLCSSLTLLAITFGSCDTLMSEQGVQCPPLQVADWKFPHIARDNITGFNLVRRFSLLK
DANVKKIRNARGPVILRLGKTALVRPSDQVFPEGLPEEFTLIFTLALKKAALRDTIYLLQ
ISDQQGYPQLSVELSGPEGILSLRASGVDPAADPVSCAFTGEGVEALMDFRWHKVTLSVQ
RSAASLHVDCRPIETKPLELRGVPKTDGHTLLGVRASDAGPVQMDIQQVTLYCDPSLAIQ
ETCCEIPGAQCPPEASKSRRAAENDLVDNTFTQDFFPSKDLAEKVVNFGGAAGLKGEKGD
RGDDCSGTSSGPCTEGPKGQKGEKGESGTASNWGEALGYKGEKGQKGEIGLQGLTGTPGK
DGRGGSVCVVGPKGQKGLPGPVGPEGLAGEPGKPGLPGPPGIGKPGPPGLPGEPGIGKGE
KGDTGPTGEDGLPGDPGPRGPGGPKGEKGDPCEVCPVSTGDINTVALQGKPGPKGEPGSP
GTGDTGLPGPRGADGKAGQKGERGSDGAKGEKGESCSACPDPEQFANLNGITTVMQQKGE
KGEPGIGHKGEQGEPGNTGLPGLKGEKGNAGSTGADGKPGKTGPKGLSGKNGLKGEKGEQ
GEPGTGEPGPKGEKGECGVCQPTEPGSQLAGIKMPEGRKGEPGPPGPPGPPGLGADGKQG
PPGLPGAKGEQGDQGDQGEKGLSGVPGVPGPPGEPGQDGLRGLKGEKGEACTSCSSPGAV
DGDGTAVPGPKGEKGDPGPPGAGKPGKNGKSGTPGLPGSPGFKGSKGEPGAAGVGLPGPQ
GEEGPRGLPGLVGLPGIPGSPGLIGPAGEKGSKGDMGLPGPQGPTGLGVAGPPGKDGVAG
AKGQPGTDGQPGRDGAKGNKGEPGECKCISGSTLVGGPGAPGTATNMWQEGPQGPPGPPG
PPGPPGAQGVNGIQGPQGIPGNDGIPGNPGIPGKIYYTGQYPQDETQKEEECKGDCSQGS
PGVPGMSGAKGEKGDQGKPGSTVLDNCDRCLERLQREQATQAMVSAHCGDRSCTGAPGVP
GTPGSPGFKGDPGAPGERGQPGSPGIMGPPGFPGPGGSSGSPGQQGERGLPGLPGLKGEQ
GPPGTPGYPGSMGPPGLHGLKGERGTPGSSGQKGELGPPGTPGYQGQAGPPGIKGDTGPA
GSAGEKGEQGFQGQPGFPGPPGPPGPAGKSGREGSPGLKGEKGNDGPSGSQGPTGPPGSP
GSPGLMGPPGIEGIDGKDGKPGLRGEPGLQGLQGPRGIPGFKGKTGHVGFPGQKGEPGPS
GPPGPPGRPGHEGDPGTPGVQGRPGPSGHIGPTGPAGPPGPPGPAGVGTQGDKGQAGERG
LPGMVGPPGPPGHPGPLGEPGSDGAAGKDGAAGTPGNNGQPGQKGEPGSPGQRGPPGERG
RPGPPGGGGYPSKDERPMMGPVGPRGERGSPGSAGPPGQPGSPGSPGNDAVVNYDEIKNF
IRQQVIKIFDERMAYYMSRMQMPVEMVSSPGRPGPPGKDGTPGNPGPPGAPGHPGQIGRQ
GRPGGQGLPGPQGPPGVKGDKGVGEMGDIGPPGPAGVPGAPGYGKMGPPGPVGQQGVPGI
PGPPGPPGTKGTNGRCNPSDCMSHQVEYSPKGPPMKGPW
NT seq
4800 nt
NT seq
+upstream
nt +downstream
nt
atgtggcttctctgctcctccctgactctgctggccatcacctttggatcatgtgacacg
ctgatgtcagagcaaggtgtacaatgtccacccttgcaagtggctgattggaagtttcct
cacatagccagggacaatattaccggttttaatctagtgaggcgattctccctgctcaag
gacgcaaacgtcaagaagatccgcaacgctcgaggtccagtcatcctacgcctgggcaag
acggcactcgtgcgccccagcgatcaggtgttccctgaaggcttaccagaagaattcacc
ttgatcttcaccctggctttgaaaaaggctgctcttcgagacaccatctacctccttcag
atatcagatcagcagggatatccacagctctcagtggagctcagtggtcctgaaggtatc
ctgtccttacgagcctcaggggtagaccctgcagccgacccagtgagctgtgctttcact
ggggagggtgtggaggctctgatggacttccgttggcacaaggtgaccctcagtgttcaa
cgcagtgccgcctccctccacgtggactgcaggcccatcgagactaagcctcttgagctg
cgaggagttccgaaaactgatggacacacactgctgggtgttcgtgcttcagatgctgga
ccagtgcaaatggatattcagcaggtgacgctgtactgtgacccttcgcttgccattcaa
gagacttgctgtgagattcctggtgctcagtgccctcctgaagcgtcaaagagccgccga
gctgctgaaaatgacctggttgacaatactttcacccaggatttctttccatcgaaggat
cttgcagaaaaggttgtaaactttggtggagctgctgggttgaaaggagaaaaaggtgac
cggggtgatgactgttctggcaccagttcaggtccatgcactgaaggacccaaaggccaa
aagggagagaaaggcgagtcgggaacggcttccaactggggtgaagcacttgggtacaag
ggagaaaaaggtcagaaaggagaaattggtctacaagggctgacaggaacaccagggaaa
gacggtcgaggagggtccgtctgtgtggtcggccccaaggggcagaagggtttgccgggt
ccagtgggtcctgaagggttggctggggagccagggaagcctggacttccaggtccacca
ggaattggaaagccaggtcctccgggtcttcctggtgaacctggcataggaaaaggagag
aagggagacacgggacctacaggagaagacggattgccaggagatccaggaccaagaggc
ccaggaggccctaaaggagagaagggcgacccatgcgaagtgtgcccagtgtccactgga
gacatcaacacagtggctttacaagggaagcctggtccaaaaggagagcccggatccccg
gggactggagacacaggacttcctggaccgagaggtgcagatggcaaagcaggacaaaag
ggagaacggggatcagatggtgccaaaggagagaagggggagtcatgttctgcatgccct
gatcctgaacaatttgcaaacctcaatggcattacaaccgtgatgcagcagaagggtgaa
aaaggggagcctgggattggacataaaggggagcaaggtgagccaggaaacacagggtta
cctggacttaaaggagagaagggtaatgcaggcagcacaggcgctgatgggaagccgggg
aaaactggaccgaagggactcagtggcaagaatggactgaaaggggaaaagggtgaacaa
ggggagcctggaactggtgagcctggcccaaagggtgagaagggcgagtgtggtgtgtgt
cagccaacagaacctggcagccaactcgctggaatcaaaatgccagagggaagaaaaggt
gaacctggccctccaggtccacctggaccaccaggtctcggcgctgatggcaaacaggga
ccaccgggcctgcctggtgcaaagggagagcagggtgatcaaggagatcaaggagaaaag
ggactgagtggcgttcctggagtcccaggaccacccggagagcctggtcaggatggacta
aggggcttgaaaggagagaagggggaggcgtgtaccagctgttcttctcctggcgctgta
gatggtgatggtacagctgtgccaggccccaaaggagagaaaggagaccctggtccccct
ggagcaggaaagcctggcaagaatggaaaatcaggtactccaggtttaccaggttcacct
ggtttcaaaggaagcaagggagaacctggagctgcaggagttggccttccaggaccacag
ggtgaagaaggaccaaggggtctcccaggacttgttggacttcctggtattccaggatca
cctggccttattggacctgcaggggaaaagggctccaagggtgacatggggcttcctggg
cctcaggggcctactggcttgggagtagcggggcctccaggtaaagatggagtcgcgggt
gctaaaggacagccaggaactgacggccaacctggacgtgatggagctaaggggaacaag
ggtgaaccaggagaatgcaaatgtatatcagggtcaacacttgtaggtgggcctggagct
ccaggaactgcaacaaacatgtggcaggaagggccccagggtcccccaggacctcctggc
cctcctggcccccctggagctcagggagttaatggaatccaaggaccccagggtatccct
ggaaacgacgggataccagggaacccgggtattcctggaaaaatttactatactggacag
taccctcaagacgaaacacaaaaagaagaggaatgtaaaggggactgttcccaggggtcg
ccaggggtaccgggcatgtctggtgccaagggggaaaaaggagaccagggcaagcctggt
tcaactgttttggacaactgtgacaggtgtctggagaggctgcagagagaacaggcgaca
caggcgatggttagtgcacattgtggtgatcgatcctgcacaggagcacctggagttcca
ggaacgcccggatcaccaggattcaaaggggaccctggtgcaccaggagaacgaggccaa
cctggatcacctggaattatgggacctcctggtttcccaggtcctgggggttcatctggt
tcaccgggtcagcagggtgagcgtgggttgcctggcctcccaggattaaagggtgaacag
ggccctccggggacacctggttatccaggaagcatgggaccgcctggactgcatgggctg
aagggtgaacgcggaacccctggaagctctggtcagaaaggggaattgggtcctcctggt
acccctggatatcaaggacaggctggcccaccgggcattaaaggagacacgggacctgca
ggatcggctggtgagaaaggcgaacagggtttccaaggacaaccaggatttccaggacca
ccaggcccccctggtccagctggaaaatcaggaagagaaggttctcctggattgaagggt
gaaaagggtaatgatggtccatcaggctcccagggaccaaccgggcccccaggctcacct
ggttctccaggattgatgggcccccctggcattgagggaatagatgggaaagatggaaaa
ccaggcctgcgaggagagccaggtcttcaaggcctgcaaggacctcgaggaatacctgga
ttcaaagggaaaacaggacatgttggctttcctggacagaagggagaacctggaccatca
ggtccaccaggaccacccggcaggccaggccatgaaggtgatcctggtactcctggagtt
caaggacgaccaggaccttcaggccacatcggtcccacaggcccagcaggacctccagga
ccacctggtccagcaggagtgggtacgcaaggagacaagggccaagctggagaaagaggc
ctcccagggatggttggacctccaggaccacctggacatccaggacctttgggtgagcct
ggcagtgatggtgctgctggtaaagatggagcggcaggtacaccggggaacaacggacag
ccaggtcaaaagggtgaaccaggttcccctgggcaaaggggtcctcctggagagagaggc
agaccaggtcccccagggggtggagggtacccctccaaggatgaacgacccatgatggga
cctgttggacccagaggagaacgaggaagcccaggctcagcaggcccacccggacagcct
ggctccccagggtcaccaggaaatgatgctgtcgtcaattacgatgaaatcaagaacttc
attcgccaacaggtcatcaagatatttgatgagagaatggcctactacatgtctcgcatg
cagatgccagtagaaatggtgtcatcacctggtcgaccaggacccccggggaaggatggt
accccaggtaatcccggacccccaggtgctcctggacatccgggacagattggcaggcaa
ggacggccaggagggcagggacttccaggaccacaaggaccacctggagtaaagggtgac
aaaggtgtcggagagatgggagatataggaccccctggaccagcaggtgttccaggcgcc
cctggctatggcaaaatgggaccccctggtcctgttggccagcaaggtgttcctggaatt
ccaggccctcctggacctcctggaacgaaaggaaccaatggtcggtgtaatccttcagac
tgtatgagccaccaagtggaatacagccccaaaggtccacctatgaaaggcccctggtaa
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integrated database retrieval system
