Austrofundulus limnaeus (annual killifish): 106527414
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Entry
106527414 CDS
T06063
Name
(RefSeq) collagen alpha-1(XVIII) chain-like isoform X1
KO
K06823
collagen type XVIII alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
alim04147
]
106527414
00535 Proteoglycans [BR:
alim00535
]
106527414
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106527414
Exosome [BR:
alim04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
106527414
Proteoglycans [BR:
alim00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
106527414
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106527414
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
TrfA
Motif
Other DBs
NCBI-GeneID:
106527414
NCBI-ProteinID:
XP_013877742
UniProt:
A0A2I4CCM5
LinkDB
All DBs
Position
Unknown
AA seq
2031 aa
AA seq
DB search
MLKSQMWSLLLILYAKNLEAFLVSPGPDPTTVTPTENATTASGVAMGKVQEDDNLTKVGE
EIINVATEIREIVEDWSAIMTASTTNEGLSQKMETVKSNINLEGSLDSQEPDSATETLTE
TAPTAAGVTMVTVKKDGNKTKVSEEIINVSMEIHKFVEDWSPTTTSWTTNEGSTQKVDTA
KPNMDLEVSLVPQEPDSTTVTHKEDTPSAGGVTMETVLEDDNRTKIGETNITVATGIYNF
MTDESTTTTTWTTNEGLTQIVETAKPNMNLEDSLVSQELDLITVTPTENGATNTGVTMET
VMEDDNRTKVGEKNISVATEIHKNMKDWQTTTTSWTTNKSLTQKVETAKPNMNLEASLVS
QEPDAITVTPTETAATNNDVMMEMVVEDDNRTKVGEKIINVATEIHKDLVDWNSATTAWT
RNEGLLQKVNDAEQNMSLDASLVSLKPDPTTVRPTEIATTPGGVTIETVKVDNRTKVTKD
IMNVSTEFRKFVEDQSTSMTAWTTNEGLSQKVETTKPNTMDQTEENGITLSQLIGDPPPD
GITKVSGPAGEPAYSLTSADVTGQLAWSHIGKTFFRDFSLIFYVKPTSPAASVLFAVTDG
PQKLMYIGVKLSAVQSGRQKVQFFYTEPDSEHSYEAASFDVPSMLDTWNLFALSVSDDEL
TFYPECATDPQVVKFERSPDPMELDPGAGVFVGQAGGADPDKFEGLFAKLKLVGDPRAVE
RFCDEGDDPSDASGEGSGETNRKLEENTVQTTPLPHPFPKPLVIPSKDRKVTLSQLVVDP
LSQRIKISDASSYEFTSASNVVHKALTYVPNPFYGNFTIFSRFLIDPSAAAVLFSITDKS
EKLMHIGLKLGAVHSGRRKVQFFYTEPGSEASNEAASFDIPSRAYRFYILGLIVAEDQVT
LYTDCSEDPQVVKLGHSLNPVILDEKAKLFLGQAGHADPDKFEGTFSAFELVGDAQGFKR
ICDNEDYTVEIVNSPELQYITRSEARITGSTGQKGDKGDKGEKGDQGPAGPKGDSGTNLG
SSSSSQHAEQGQRGEKGAKGDSGFGYPGKKGERGAQGPPGPPGPPGPAAEVLQLPDGSAV
HKVAGPPGPPGSPGLDGAAGEDGEPGDPGEDGKTGPAGPQGAPGSPGTPGAKGQKGEAGD
GQPGPRGPPGPPGPPGTGTGDRSTFVDMEGSGFPDLEKIRGPRGPPGLPGPPGLPGIPGT
SVALGPDGPIAFGPSGPPGQDGAPGLPGLPGPPGLPGPPGPRGEKGDSGYLGLPGPAGEK
QEEVDNNPFNYLFSFFAPSSTGAQGDPGKTGTSGQTGLAGLPGPMGPVGPPGPPGPPGPP
YIVGTSDQKGKEVLNALPGLRGPPGPQGPPGIPGLPGKPGIPGDHGIKGAEGPRGPAGNP
GLDGYPGLQGEKGDRGEKGEMGFPGREGGPPGPPGPPGPPGQIVYQSTRDFNEVYWNEVG
QGVSRRTGLPGPMGQKGDKGDIGAPGYAPKGQKGEPGIILGPDGKPMHLGGLAGQQGEMG
SPGPEGPPGPYGPQGPKGEIGFPGRPGRPGLNGVKGEKGEAGAGDGYSYPGPPGPPGPPG
PPGPPGHSTDRIGGYNEHSSFYPVKGEKGDRGPPGLLHISGLEPGFDIYAFKNELKGETG
LKGEKGEPGGYYDPRYGGSAAGPPGVPGPPGPPGERIVGPPGPQGPPGQPGRGSDGRPGL
PGPPGPPGPSLSGPYRGTQTISIPGPPGPPGTPGLPGLSSGVMVFKSYDIMAATARRQPE
GSLVYITDQTDLYVRVRDGVRQVQLGNYIALPSLPGNELGAVEPPPIVPYSPDLYRQPVN
PVQPDPQYPPQTDPRYPSYSDRFNGADGRYVDPRYPVTPPRRPPPPQSLIHSHSSGPALH
LIALNSPHTGSMRGNSGADLLCFNQAQAIGLKGTFRAFLSSKLQDIHSIVRRDDRDNVPI
VNLKDEVLFDNWNGIFYNGRMKDNVSIYSFNGKDVLRDDTWPEKMVWHGSTSGGQRHLDS
YCESWRVSHRAVTGMATSLQSGALNQQTSSSCSSSYVVLCIENSYVDHAKR
NT seq
6096 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagagccagatgtggtcacttcttctgattctctatgccaagaacctggaggcc
ttcttggtttctccaggaccagatccaacaacagtgacacctacagagaatgccaccaca
gccagtggtgtagcaatggggaaagtgcaggaagatgacaacttaaccaaggttggtgag
gaaattatcaacgtggccacggaaatccgtgagattgtggaggattggagtgcgatcatg
actgcctcgaccactaacgaaggcttgagtcagaagatggagacagttaaatcaaacata
aacctagagggctccttggattcccaagaaccagattccgcaacagaaacactcacagaa
actgctcctacagccgctggtgtaacgatggtgactgtgaagaaggatggcaacaaaact
aaggtcagtgaggaaattatcaatgtgtccatggaaatccacaagtttgttgaagattgg
agcccaaccacgacctcctggaccactaatgaaggctcaactcagaaggtggacactgct
aaaccaaacatggacctggaagtctccttagttccccaagaaccagattccacaacagtg
acacataaagaggatactccttcagctggtggtgtaacaatggagactgtgctagaggat
gacaacagaactaagattggtgaaacaaatatcactgtggccacaggaatatataacttt
atgacggatgagagcacaactacgaccacttggaccactaacgaaggtttgactcagata
gtggagactgctaaaccaaacatgaacctagaggactccctggtttcccaagaactagat
ctaataacagtgacacctacagaaaatggcgctacaaacactggtgtaacgatggagacg
gttatggaggatgacaacagaaccaaggtcggtgagaaaaatattagtgtagccacagaa
atccataagaatatgaaggattggcagacaaccacgacctcctggaccactaacaaaagc
ttgactcagaaggtggagaccgctaaaccaaacatgaacctggaggcctccctggtttcc
caagagccagatgcaataacagtgacacccacagaaactgcagctacaaacaatgatgta
atgatggagatggttgtggaggatgacaacagaactaaggtcggtgagaaaatcatcaat
gtggccacagaaatccataaggatttggtggactggaactcagccacaactgcctggacc
cgtaacgaagggttgcttcagaaggtgaatgatgctgaacaaaacatgagcctggacgcc
tccttggtttccctaaaaccagatcccactacagttagacccacagagattgccactaca
cctggtggtgtaacaatagagacagtgaaggtggacaacagaactaaggtcactaaggac
attatgaatgtgtccacggaattccgtaaatttgtggaggatcagagtacatccatgact
gcctggaccaccaatgaaggcttgagtcagaaggtggagaccactaaaccaaacaccatg
gatcaaacagaagaaaatggcatcactttgtcacagcttattggagaccctcctccagat
ggcatcactaaagtctctggacctgcaggcgagcctgcctacagtttgacctctgcagat
gtaacgggccagctggcctggtctcatatcggcaaaactttcttccgtgacttctccctc
attttctacgtcaagcccacctcccctgccgcttcggtcctcttcgccgtcacagacggg
cctcagaagctcatgtacatcggggtgaagctcagcgcggtgcagtccggccgtcagaag
gtgcagttcttctacaccgaacccgactccgaacattcgtacgaggcagccagcttcgac
gtgccgagcatgctggacacgtggaacctcttcgccctgtcggtgtccgacgacgagctg
acgttttatccagagtgcgccacggatccgcaggtggtgaaatttgagcgctcgcccgat
cccatggaactggaccccggagctggggtctttgtgggccaggcaggaggagcagaccca
gacaagtttgagggtttgtttgcaaagctgaagttggtgggagacccccgagcagttgag
cgcttctgtgacgagggcgacgacccaagtgacgcttctggtgaaggcagtggtgaaacc
aacaggaagctggaggaaaacactgtgcagacaactcccctaccacatccatttccaaag
ccactcgtgattccctcaaaagatagaaaagtcactttgtcccagctggtggtagaccct
ctttctcaacgaatcaagatctctgatgcttcttcctacgaattcacctctgcatcaaat
gtggtccacaaggctctgacatacgtccccaatcctttctacggcaatttcaccattttt
tcccgctttctgatcgacccgtcagctgccgccgtcctcttctccattacagataagtca
gagaagctcatgcacatcggtttaaaactcggtgcagtgcactctggtagacgaaaggtg
cagttcttctacactgaacccggatccgaggcttccaatgaagcagctagctttgacata
ccgagcagggcgtacaggttttatattttagggctgattgtggctgaggatcaggtgact
ttgtacacggactgttctgaggatccacaggtggtgaagcttgggcattcgcttaatcca
gtgattctcgacgagaaggccaagctatttttgggtcaggcagggcatgctgacccggac
aaatttgagggtacattctcagcgtttgaattggtgggagatgctcagggatttaaacgc
atctgtgacaatgaggattacaccgtggaaattgttaattctcctgagctgcaatatata
actcgatcagaagccagaatcacaggctccacaggtcagaagggtgacaaaggtgacaaa
ggtgagaagggtgaccaaggtcctgcaggaccaaagggagattcaggtaccaacttgggt
tctagttcctcctcacaacatgcagaacaaggacagcgaggagaaaagggagcaaagggt
gattctggcttcggatatcccggcaaaaaaggtgaacgtggtgcccagggcccccccggc
ccccctggcccaccaggacctgcagctgaggtgctccaactcccagatggttctgctgtg
cacaaggtggctgggccccctggcccaccaggatcgccagggttggacggtgctgcaggg
gaggatggagagcctggggatccaggagaagatggaaaaactggtcctgctgggccacaa
ggtgctccaggaagtccaggaacccctggtgccaaaggccaaaagggtgaggctggagac
ggtcaacctggtcctagaggccctccaggtccaccaggacctcctggaactggcactggg
gatcgttccacttttgttgacatggagggatcaggattcccagatttggaaaaaatccgg
ggtccacgtggtccaccgggcctcccaggtcctcctggtcttcctggaatacctggtact
tcagtggcactaggacctgatggtccaatagcgtttgggccttctggtcccccaggacaa
gatggagcccctggtctcccaggcctacctggtccccctggtcttcctggtccacctggg
cccagaggagaaaagggtgacagcggttatctcggtctccctggtccagctggagaaaag
caagaggaagtggacaacaaccctttcaattacctgttttctttctttgctccgtcctct
acgggtgctcaaggtgacccaggaaagacgggtacgtcaggacagactggtctggcaggg
ctcccaggtccaatgggaccagttgggcctccaggaccccctggaccaccaggtccacca
tacattgttggtactagtgaccagaaaggaaaggaggtgctaaatgccttacctggactc
agaggcccacctggacctcagggtccacctggcatacctggtctacctggtaagccaggt
attcctggtgaccatggaatcaaaggtgcagaaggaccacgaggacctgctgggaaccca
ggtttggacggataccccggactccagggtgaaaagggagacagaggagagaagggtgag
atgggtttcccgggtcgagaaggtgggccacctggtcctccagggcctcctggccctcca
ggtcagattgtctaccagtcgacaagagattttaacgaggtttattggaacgaggtgggg
cagggtgtctcacgtcgaacaggactcccaggtcccatgggtcaaaaaggagataaagga
gacataggtgctccaggatatgctcctaagggacaaaaaggagaaccggggatcattttg
ggacctgatgggaaacctatgcatctgggaggcttggcaggacagcagggtgaaatggga
agtcctggcccagagggacctccaggtccatatgggccacaagggcccaaaggagaaatt
ggtttccccggcagaccaggccgaccaggattaaatggtgtcaagggagagaagggagaa
gcaggagctggagatggttacagttaccctggtcccccaggtccaccaggaccccctgga
cctccgggacctccaggacattccactgacagaatcggagggtacaatgagcactccagt
ttttaccctgttaaaggagagaaaggtgatcgaggaccaccggggttacttcatatttca
ggtctggagccaggctttgatatttacgcttttaagaatgagctgaaaggtgagacggga
ttaaaaggagagaaaggagaacctggaggatattatgacccccgatatggagggagcgca
gctggacctccaggagtccctggacctccgggccctccaggagaaagaattgttggacca
ccgggacctcaggggccacctggacaaccaggaagaggctctgatggtcgacctggactt
cctggaccacctggaccacctggaccatccctgtctggaccgtacaggggcacacagact
atcagtattcctggaccaccaggaccacctggaactccaggtctacctggactgtcttca
ggggtgatggtgttcaaatcctatgacatcatggcagccacagccagaagacaacctgaa
gggtctctggtttacataacagaccaaacagatctctatgtacgagttcgagacggagtt
cgtcaagttcagctggggaactatattgctttaccaagtctgcctggtaatgaactcgga
gctgtggagccaccgcccatcgtcccctactcaccggacctctacagacaacctgtgaat
ccagtccaaccggatcctcagtatcctccacagactgaccccaggtaccccagttactca
gaccgcttcaacggagcagatggtcgatatgtagaccctcggtacccagtcacacctcca
cggagacctccacctcctcagagtctcatccacagccacagctcaggaccagcgctccac
ctcatcgctctgaatagcccacacacaggctccatgagaggaaattcaggcgcagactta
ctgtgtttcaaccaggctcaggccatcgggctgaagggaacgttccgagccttcctgtcc
tccaaactccaggatatccacagcatcgtccgcagagacgacagagacaatgtgccaata
gttaacttgaaggatgaggttctgtttgacaactggaatggcatcttctacaacggccga
atgaaggacaacgtttcaatctactcctttaatggcaaggacgtcctcagagacgacaca
tggccggagaagatggtgtggcacggctcgaccagcgggggtcagcggcaccttgacagc
tactgcgagtcgtggcgcgtcagccaccgggcggtgacgggcatggccacgtcgctgcag
agcggcgccctgaatcagcagacctccagcagctgctccagctcctatgtcgtgctctgc
atcgagaacagctacgtcgaccacgccaagagataa
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integrated database retrieval system
