Austrofundulus limnaeus (annual killifish): 106528086
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Entry
106528086 CDS
T06063
Symbol
casc3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03013
Nucleocytoplasmic transport
alim03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106528086 (casc3)
03015 mRNA surveillance pathway
106528086 (casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106528086 (casc3)
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106528086 (casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
106528086
NCBI-ProteinID:
XP_013878612
UniProt:
A0A2I4CF46
LinkDB
All DBs
Position
Unknown
AA seq
764 aa
AA seq
DB search
MADRRRRRKRASQDSEDDDESGSGSDSGRSGSPDPKSRVRDPEPAEVEVGRTEPKSDVES
ECESEDGAGEAVLSDYDSADPEENASHSEGAEDEEEGYSEEEPPAAAAASESKPPAADDP
AQEEEEEEAEEKAEGEAGGHRKEEGTGEEKGNLAGERQSGDGQESTEDPETKAGGKPGQH
LDDDEDRKNPAYIPRKGLFFEHDVRGHAQEEERPKGRNRKLWKDEGRWEHDKFREEEQAP
KSREELIAIYGYDIRNGGGGQGDRAYRQRRPRPGSSPNRDKRWRDGGGGGPRPARSWQNR
GGAAPPSSLPPSSSSSAFPPLPSAHRNSNSSRPPPSRSRPPHPNQATPPHLEYRSNESNA
PPLHPRERLGSKALEPAGERGLASRGARGPGGKAGPAVVIEEVSVSPGGPGEEDLSSASA
ATAASPQPGGYQSPRRQERGAADRSASGPAASPSDPSPQSAAANQEASPPTERPVERKSY
SLARRTRSRPSDLGSKQASVEESASGGNTSSPGSGGGKAWAGDGTGPTAPAGVGGXAGLA
ELDQDVARLSLARQNWSQSPTSYMRSELRGLPNPLHIGGGPPQFSSMEEMGVGSNRAKRY
SSQRQRPVPEPAPPMHLGVMEGHYYEPMSYQGPIYTHGDGAAPIPPQGMLVQPEMHIPHP
GLHPHQSGGPIANPALYGAPPVSLSPGQPQQLLPPPFYPPPGVVTFPYPTMYPNPQGQSQ
VTYGGVTYYDTMQQQAQPKPSPPRRTSQPVTIKPPPPEVPFASE
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcgcaggaggaagcgcgcgtctcaggacagcgaagacgacgacgag
tccggctcgggttcggacagcggacggtctggttctcctgacccaaagagccgagtccga
gatcccgagccggcggaggtggaggtgggccggaccgaaccgaaaagcgacgtggagtcg
gagtgtgagagtgaagacggagcaggagaagctgtcctttcagactatgacagcgccgac
ccggaggagaacgcgtcccactcagagggagccgaggatgaagaggagggttacagtgag
gaagagcctccagcagcagcagcagccagtgagtccaaacctccagctgctgacgacccg
gctcaggaggaggaggaggaggaggctgaagagaaggctgagggggaggcaggaggacac
agaaaggaggaggggacaggggaggagaaaggaaacctcgcaggagagaggcagagtggt
gacggacaggagtccactgaggatcctgagacgaaggcgggaggaaaaccgggccagcac
ctcgatgatgacgaggaccggaagaacccggcctacatccccaggaagggtctgttcttt
gagcacgacgttcgaggccacgctcaggaggaggagaggcccaaaggtcggaacaggaag
ctgtggaaggacgagggccggtgggagcacgataagttcagagaggaggagcaggcgccc
aagagccgcgaggagctcatcgccatctacggttacgacatcaggaacggaggcggcggt
caaggagaccgagcgtatcgacagagacgaccccggcccggttcttctccaaacagggac
aaacggtggagggacgggggcggaggaggacccagaccggcccggtcctggcagaaccga
ggaggagctgctccaccttcatctctgcctccctcctcttcatcctctgcattccctcct
cttccttccgctcatcgcaacagtaactcctccagaccacccccctcccgcagcaggccc
ccccacccgaaccaggcaaccccccctcatttggagtacaggagtaacgaatcaaacgca
cctccgctccatcccagggagcggctgggttctaaagctctggagcctgcaggagagagg
ggcttggccagcaggggggcgcggggtcctggaggtaaagcggggccagccgtggtcatt
gaggaggtgtcagtcagtcctggggggccgggagaggaggatctgagctcagcctctgca
gctacagctgcctcacctcagccaggggggtaccagtcacccagacggcaggaacggggc
gctgctgacaggtctgcctctggaccggctgcctccccctctgacccctcccctcagtct
gccgcagccaatcaggaagcctctccgcccaccgagcggccagtggagcgcaagtcctac
tctctggcccgcaggactcgatcgcgaccctcagacctgggcagcaagcaggcctctgtg
gaggagtctgcatctgggggaaacacctcctctcccggcagcgggggagggaaggcctgg
gccggagacgggaccggtcccacggcgccggcaggggtgggtgggrgcgcgggactagcc
gagctggaccaggacgtggctcgactcagtctggctagacaaaactggagtcagagcccg
acgtcctacatgcgctccgagctgagaggcctcccgaaccccctgcacattggcggcggc
ccgcctcagttctccagcatggaggagatgggagtcggctccaaccgggccaagcgctac
tcgtcccagcgtcagaggcctgttccagaaccggcgccgcccatgcacctcggcgtgatg
gagggacactactacgagcccatgtcgtaccagggaccaatctacactcatggagacggc
gccgcccccataccgccccaagggatgctggtccagcctgagatgcatatcccccatcct
ggtctccatccccaccaatcgggcggccctatcgctaaccccgccctctacggagctccg
cctgtctctttgtcaccggggcaaccacagcagctgctgcctcctcctttctaccctccc
cctggggttgtaacctttccatatcccaccatgtacccaaacccacaggggcagtcccag
gtgacctacggcggcgtcacgtattacgacacgatgcagcagcaggctcagcccaaaccc
tcgcccccccgccgaacgtcccagcctgtcaccatcaaacccccccctccagaggttccc
tttgcctcagagtga
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