Austrofundulus limnaeus (annual killifish): 106528307
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Entry
106528307 CDS
T06063
Symbol
smg5
Name
(RefSeq) protein SMG5
KO
K11125
protein SMG5
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106528307 (smg5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106528307 (smg5)
03032 DNA replication proteins [BR:
alim03032
]
106528307 (smg5)
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
106528307 (smg5)
mRNA cycle factors
Common to processing body (P body) and stress granule
106528307 (smg5)
DNA replication proteins [BR:
alim03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
106528307 (smg5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
106528307
NCBI-ProteinID:
XP_013878900
UniProt:
A0A2I4CFY2
LinkDB
All DBs
Position
Unknown
AA seq
1125 aa
AA seq
DB search
MSGPGQDSEPEAKVLLIKRLYRAVVESVHKLDVIIGSKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFYQ
HLLLYIQSHYQLELQDCIDWTHVTDPLIGRKKPVSASPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVETEQLAERFYHQALSVMPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSDI
PFEGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKRLLVSFMYLQSLLQPKNS
LMETELTSLCQSVLEDFNLVLFYLPPPTQGGAHHCPSEEEEEQQQHTDSSCPVLPDILIF
KMVVTCLMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEEGESQVPPLHTD
AADDPEIRDLSAQPVDRSEERPLQNGSLEQEDEEDKDEDGGECVGGKKQSCEEDPQKTGE
EKQRQKKKYTRLSRLRRRRCAHKSVRGEDESDLSEGFESEEEEEEDVDGVERADSAAGTT
VEQPLNPSAVKKGTKREPSGEEGSWGSGSEEEEEEEEGRTAFDVETDSDMNSQESRSDLE
DMEEAENSENVEGQARDHQEEEEDEDQPKDGGGERDGETPPATNGPLAPSESSISSNLQA
MSSQLFQAKRCFRLAPTFSNMLLRPRASSSSGLPTPTDNSAPPSQETPPPPGDLHSDLSP
GAANGTNENDLDSDSEGSQHSTQSVHSEKTFVEKLEILTNQGLMQVVKVFIDWLRTNTDI
ILMCAQSSQSLWNRLSVLLNLLPDGSKLLEAELGLNSQVTEMLNECEQPGLVQTLVLPED
VALRHLPALNVAHRRLDFTRRSASLSPLQECVVRVCCIRSFGHFLTNLQGNILHFNPEAG
IFTSISQSEQDNLGQQAKAQFKMAEEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQS
SMSPYLVPDTAALCQHLNLIRQLAGSGCFIIIIPRTVIDGLDRLKKENAGARDGIRFLES
EFRKGNRYIRCQKESGRSFERDKLKRQDVEAWHLYKMIDSCRQLTVSQSNGDEDTAGMVT
ILTAHEVEELCSQSAAMKSAVQAVGSAGMELKNIVEFYRQWKEMG
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgagtggaccgggacaggacagcgaaccagaggcgaaagtcctcctcatcaagcggctt
tacagggctgtggtggagtctgtgcacaagctggatgtcatcatcggcagcaaatcatct
tacagagaagtcttcaagccggagaacatcagcctgcggaacaagctgagggagctttgt
gtgaaactgatgtttcttcatcctgtcgactacggccgtaaggctgaggagctgctctgg
aggaaggtttactatgaggtcatccaggttatcaagacaaacaagaagcacatccacagt
cgcagcgctctggagtgtgcctacaggacccacctgatcgctggagtgggtttttaccaa
cacctgctgctctacattcagtcacattaccagctggagctgcaggactgcatcgactgg
acccacgtcacagatccgctcatcggccgaaagaaacccgtgtcagcctcccccaaggag
atggagtgggcgcagatggcctgtcatcgctgtctggtctaccttggagatctggctcgt
taccaaaatgaactcgctggagttgagactgagcagctggcagagaggttttaccatcaa
gccctgtctgtcatgccacatgttggaatgccttttaaccaactgggaacgctggctggg
agcaaattctacaacgttgaagcaacatattactatttacgctgcatccaatcagatatt
ccttttgagggggcctatggcaacctgaagcgcctgtttgacaaagctgctaagatgtac
caccaagtgaagaagcaggaaatgaagaagctgtctccgtctcgacagagatccaaagac
attaaacgcctcctggtgagcttcatgtaccttcagagcctgctgcagcccaagaacagt
ctgatggagacggagctgacgtcgctctgccagtcggtgctggaggacttcaacctcgtg
ctcttttaccttcctcctccaacacaaggaggtgctcaccactgccccagcgaggaagag
gaggagcagcagcagcacaccgacagctcctgtcctgttctgcccgacatcctcatcttc
aagatggtcgtcacgtgtctgatggtggtgcacagtctgaagaggggaggatcaaagcag
tacagtgcatccatagccttcaccctggctctgttctcccaccttgtgaaccacgtgaac
atccggctgcaggctgagctggaggaaggagagagccaggttcctccccttcacactgat
gctgcagatgatccggagattcgtgatttgtcagcccaaccggtcgaccgctctgaagag
aggcctctacagaacggctccctggagcaggaggatgaggaggacaaggatgaagatgga
ggtgagtgtgtcggcggcaagaagcaaagctgcgaggaagacccgcagaagacgggagag
gagaagcaaaggcagaagaagaagtacactcgcctttcccgtctccgccgccgccgctgt
gctcacaaaagtgtcagaggggaggatgaaagtgacctgagcgaagggttcgagagcgag
gaagaggaggaggaggatgtggacggggtggaacgtgctgattcagcagctgggaccacc
gtggaacagccgctcaatccttcagctgtcaagaagggaactaagagggagccgtcaggg
gaggaaggcagctggggaagtggctctgaggaagaggaggaggaggaggaaggtagaaca
gcgtttgatgtggagaccgactctgacatgaacagccaagagtctcgctcagacctggag
gacatggaggaggcggaaaactctgaaaacgtggagggtcaggcccgggatcaccaggaa
gaagaggaggatgaagaccagcccaaggacggaggaggggagagggacggcgagacccct
cctgccaccaacggacccctggcgccgagcgagtccagcatcagcagcaacctgcaggcc
atgtcctctcagctgttccaggccaaacgctgcttccgcctggcgcccaccttcagcaac
atgctgctgaggccccgagcctcctcatcctcagggcttcccacccccacagacaactct
gccccgccctcccaagagaccccgcctcctcctggggacttgcacagtgacctgagccct
ggtgctgccaatggaaccaatgagaacgacttggactctgactcagaaggaagtcaacac
agcactcagtctgttcacagtgagaaaacctttgtagaaaagctggagatcctgaccaat
cagggcctgatgcaggtggtcaaagtcttcattgattggctgaggaccaacacagatatt
attctcatgtgtgcacagagttctcagagtttgtggaaccgtctgtctgttctgctgaac
ctgcttccagatggcagcaagctgctggaggctgagctcgggctgaactcacaggtgaca
gagatgttaaacgagtgcgagcagcccggtttggtccagactctggtgctgcccgaggac
gtggctctgcgacacctgcctgctctcaacgtggcccaccgccgcctcgacttcacccgc
cgcagcgcctcgctcagccccctgcaggagtgtgtggttcgagtgtgttgtattcgcagt
ttcggtcacttcttaacaaatctccagggcaacattctgcacttcaacccagaagcaggg
atcttcaccagcatcagccagtctgagcaggacaacctgggccagcaggccaaggcccag
ttcaagatggctgaagaagaggctcgtagaaaccgattaatgagggatatggcccaactt
cggctgcagttagaggtgtcgcagctagagggcagccttcagcagcctaaagctcagtcg
tccatgtctccctacctggtaccagacaccgctgccctctgccagcatctgaacctcatc
cggcagctggctggcagtgggtgcttcatcatcatcatccctcgaacagtgattgatgga
ctcgacaggttaaagaaggaaaacgccggcgcgagagacgggatccgttttctggagtcc
gagtttcgtaaaggcaacaggtacattcgctgccagaaggagtcgggtcgcagttttgaa
agagacaagctgaaacgtcaggatgtggaagcctggcatttgtataagatgattgacagc
tgccgtcagctaacggtctctcagagcaacggagacgaggacacggccggcatggtgacc
atcctaacggctcatgaggtagaagagctgtgcagtcagtctgcagcgatgaagtcggcg
gtccaggccgtgggctcggcgggcatggagctgaagaacatcgtggagttctaccgtcag
tggaaagagatgggctga
DBGET
integrated database retrieval system
