Austrofundulus limnaeus (annual killifish): 106528912
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Entry
106528912 CDS
T06063
Name
(RefSeq) RNA exonuclease 1 homolog
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
106528912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
alim03009
]
106528912
Ribosome biogenesis [BR:
alim03009
]
Eukaryotic type
Pre-60S particles
RNases
106528912
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
TBCA
Motif
Other DBs
NCBI-GeneID:
106528912
NCBI-ProteinID:
XP_013879650
UniProt:
A0A2I4CI29
LinkDB
All DBs
Position
Unknown
AA seq
1156 aa
AA seq
DB search
MFPSSGLFAHISCPFVQRGLCERPHCLYKHVTESWNTFGGLFKSSSVVDLTGNGRQRRTP
VKDESTDECLYELERINKEIETVRHEVEQEQRRLSSYQTEQADSRGDAPVSKCETSGLPL
SKDRKTSVQARKYVVDNSKPRTDLEYDPLSNFSAALRSYSSPGKEHKGKNREATRSSCAR
FDQKKPSTHQAQMSRSPSPDALNESTKDCVLVIDISLSPEKASGPCQKSVSVKSSQVQKR
EAKEVKTEAATLNSPPLSEVVSVAVSPSLKDNMNKTYDPCAAENNRDSPTCDDSKDSEVD
LAGCLKEFEVECQNAHFHFAKTGVKTSKNTNFPIKSDKQRHNSHLESASSVEKINSLQPP
SNSRLYXPLAANSPPTKQPTKQYTLVEQPALDQVQSGSESSVVQNSQKMLSKTQGKVQRK
CTLIQEQAEARQVSFQKVSSSVNSHSRAESSKATEQFPETEKVSVIIIDSSCDEDEEENG
EELDCADMELSDSDPMEECYRIFMEAKHEENRNEEHPGVSAGPDVDAMKPEVNTALQALP
GKKRVAHEATNLEPLAKRRPQPQVLVPLQEPAAGFGSWPFVPSKIQQVHQRASMLTTSVK
AGQAFVSSASQKKPETQSAPSAPGPVNLQPDPLQXAYLNYIPVGTAVIEVGNNLHLILPQ
GNFPLSVASTSCPVTSVLNPVTQVHPSPIPVRQPNPPPVVTALPKYRSAAPVLITAPARR
PTLNPAFASTLHTTAAPTTSQAPVQTAVKPKPGKRKLKQSSEAAKDKVPHDVRQCYVNKF
TEEFLKTTSNVNDAFAKALAEEKSVYNRSVNKLKYMSVAVNALKRLRSQNVAAKSETNVQ
SQRPKGNIPFNKKRLKQNDDLALYESLKDYVLTDEKMTENNYPAQHPEKPGSAVLFADKR
MSADPLKRICCRCGATYSVSHTGKHVRKEECNYHYGKGVTNRVPGGVETRYSCCQGIMGA
PGCQVFKLHVHDSLSLDGFVSTSSRCSSDTSCPRVYSLDCEMCYTLQGLELSRVTVINSN
LQIVYDTFVRPDNEVIDYNTRFSGVSEVDLKGNHTPLSEVQQTLLSFISADTILIGHELE
TDLCLLKLLHGMVVDTSVVFPHRLGPPNKLSLNSLTAEHLRRIIQESVCGHDTAEDAAAC
MELMLWRLKEDGKLKK
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgtttccttcgtccggtctttttgctcacataagctgtcctttcgtacaacgagggctt
tgtgagcggcctcactgtttgtacaaacatgtcacagaatcgtggaatacgtttggtggc
ttgtttaaatcgtcgtccgtcgtggacttaacaggtaatggcagacaacgtagaacaccg
gtgaaggatgagtccacagacgagtgcctttatgagctggagagaatcaacaaagagatt
gaaaccgtgaggcacgaggtggagcaggagcagaggcgcctgtcgagctaccagactgaa
caggctgacagcagaggcgacgcccccgtctcaaagtgtgaaaccagtgggctgcctctg
agcaaagatcgtaaaaccagtgtgcaagcgaggaagtacgtggtagacaactcgaaacca
aggaccgatttagagtacgaccccttgtccaacttctccgctgccttgcgctcctacagc
tcaccgggcaaagagcacaaagggaaaaatcgagaagcgacgagatcgagttgtgcgcgt
tttgatcagaagaagccgtccactcatcaagcccaaatgtcccgatcaccatctccagat
gccctcaatgagtctactaaagactgcgtcctggttattgatatttctttgtcaccggag
aaagcaagtggtccatgccagaaatctgtttcagttaaatcctctcaggtccagaaacga
gaagcaaaggaggtgaaaactgaggctgctacacttaattctccaccactgagcgaggtg
gttagtgttgctgtttcaccttccttaaaggacaacatgaataaaacgtatgacccttgt
gcagctgaaaacaatcgagactcgcccacttgtgatgacagcaaagactctgaagttgat
ttagctggatgtttaaaagaatttgaagttgagtgtcagaatgctcattttcattttgct
aaaacaggagtgaaaacttccaaaaacacaaattttcctatcaaatcagacaaacaacgc
cacaacagtcatcttgaatcagccagtagtgttgagaaaataaattctctgcagccaccc
agtaattctcgtctttatawaccgctagctgcaaatagtccacctacaaaacagccaact
aagcaatacaccttggtagagcagccagctctagaccaggttcaaagcggttccgagtca
tctgttgtgcaaaacagtcagaaaatgttaagcaaaacacaagggaaggtgcaaaggaaa
tgtactttgattcaggagcaagcagaagcacgtcaggtttcatttcagaaggtttcatca
tccgtaaactcacacagcagagctgaatcatctaaagccacagagcagtttccggagaca
gaaaaagtgtccgtgataataatcgactccagctgtgatgaggacgaagaggaaaacggg
gaagaactcgactgtgcagacatggagctctctgacagtgatccaatggaggaatgctac
aggatcttcatggaagcaaaacatgaggaaaacagaaatgaggagcaccctggtgtttct
gctggtcctgatgtggatgctatgaagccagaggtcaacactgccctccaagctttgccc
gggaagaagagagtggctcatgaagccacaaatctagagccacttgctaaaagaagacct
cagccccaagtgctggtgcctcttcaggagccagcagcaggatttggttcttggcctttt
gtcccttctaagatccagcaggtacaccagagggcctccatgctgactacttcagttaaa
gctggtcaggcttttgtttcctctgcaagtcagaagaagccagagacacaaagtgcacct
tctgctccaggtcctgtaaaccttcaaccggatccattacagartgcttatttgaactac
atccctgtgggaactgcagtcattgaagtaggcaacaacttgcacttgatcctcccacag
ggtaacttccctctgtctgtcgcctccacctcctgcccagttacatcagtgctaaatccg
gtgactcaagtgcatccgagtcccatcccagtcagacagcccaaccctccacctgtggtt
acagccctgccaaaatatcgttcagcagcacctgtgctcattacagctcctgcaagaagg
cctacactcaaccctgcttttgcatcgactttacacacaacagctgctcccacaacttct
caagctcctgtccagacagctgttaagccaaagcctggtaagcgaaagctgaagcagtct
tctgaggctgcgaaggacaaagttccccatgatgttcgtcagtgttacgtaaacaagtty
accgaggagtttctcaaaaccacgtccaacgtcaacgatgcttttgcgaaggccctggct
gaggagaaaagtgtgtacaaccgcagcgtgaacaaacttaaatatatgagcgttgcagtg
aatgcacttaagaggctgaggagtcaaaatgttgctgctaaaagtgaaacaaacgtccag
agtcaaaggccaaaaggaaacatcccatttaacaagaaaagactgaaacaaaatgatgat
ttggctttgtatgaaagtttaaaagattatgttttgactgatgaaaagatgaccgagaac
aactaccctgcccagcatccagaaaaacctggttctgctgttctttttgcggataagaga
atgagtgcagacccccttaagaggatctgctgtcgatgtggagccacatactctgtgagt
catacaggcaaacacgtccgcaaagaggagtgcaactaccattatgggaaaggagtgaca
aacagagtgccaggtggagtggagacccgctacagttgctgtcagggaatcatgggagct
cctggatgtcaagtgtttaagttgcacgtccacgattccctcagcctggatgggtttgtt
tctacaagctcaagatgttcctcagacacaagctgtcccagggtttactccttggattgt
gaaatgtgttacactctccaaggtctggagctgtccagagtgacggtgatcaactctaac
cttcagattgtctatgacaccttcgtcagacctgataatgaggtgatmgactacaacacc
aggttttcaggcgtcagcgaggtggatctgaaaggtaatcacacccctctcagtgaggtc
caacagaccttgttgagcttcatcagtgctgacaccattcttattggacatgagctggaa
acagacctctgtttactgaagctgcttcatgggatggtggtggacacatcagtggtcttc
ccccaccgtctaggtccacctaacaaactgagcctgaacagcctcacagccgaacacctc
aggaggattatccaggagagtgtttgtggccacgacactgcagaagatgcagctgcctgc
atggagctcatgctgtggaggctgaaagaagatgggaagctaaaaaaatga
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