Austrofundulus limnaeus (annual killifish): 106529341
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Entry
106529341 CDS
T06063
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106529341 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106529341 (xab2)
03041 Spliceosome [BR:
alim03041
]
106529341 (xab2)
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106529341 (xab2)
Spliceosome [BR:
alim03041
]
Complex B
Other components
Prp19-related factors
106529341 (xab2)
Complex C
106529341 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_15
TPR_16
ARM_TT21
ARM_TT21_C
NRDE-2
TPR_1
Tcf25
Motif
Other DBs
NCBI-GeneID:
106529341
NCBI-ProteinID:
XP_013880197
UniProt:
A0A2I4CJM4
LinkDB
All DBs
Position
Unknown
AA seq
847 aa
AA seq
DB search
MPSLNGKADVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGPKSTLNMIYERALRELP
GSYKLWYNYLRERRKQVKGKCVTEPVYEEVNNCHERALVFMHKMPRIWIDYCQFLVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYIE
YLRSIGRLDEAAVRLAAIVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQEEEDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGTPRQIINTYTEAVQTIDPMKATGKPHSLWVSFAKFYEENDQLDDARTIFEKATKVN
FKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPSKKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
YGLARHAMAVYERATQAVETEERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
EMCLRFADMESKLGEIDRARAIYSYCSQICDPRVTAHFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELAKQANPDEINIDEDEDDDEQGPEEVQLEQKSVPTAV
FGGLTDD
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgccgtctttaaacggaaaagctgatgttatctttgaagatgatgatcttccttatgaa
gaggagattatcaggaatccatactcagtcaartgttggatgcgttacattgaattcaaa
caaaatggacccaaatccactctcaacatgatttacgagagagctctgagggaactgcct
ggaagctataagttgtggtacaattatctgcgagagagaaggaaacaagttaaaggaaaa
tgtgtaaccgaaccmgtctatgaggaggtcaataattgccacgaaagggcactggtgttc
atgcacaagatgcctaggatatggattgattactgccagttccttgtgtctcagtgtaag
atcacaagaagtcgtcgaacgtttgaccgtgcactgagagctctaccagtaactcaacat
ccacgaatctggcctttgtatctacgctttgttcgcaacttacccctacctgagacagca
attcgagtctatcggcggtaccttaagctttctccagaaaatgcagaagaatacattgaa
tacttgcggtctattggccgactggatgaagcagctgtgcgactagcagctattgtcaat
gatgaaagctttgtgtccaaagagggcaagtctaactatcaactgtggcatgagctatgt
gacctgatttctcaaaatcctgataaagtgacctctctaaatgttggagccatcatacga
ggaggcctcacacgattcaccgaccaacttggaaaactttggtgctcgttagctgactay
tacatcaggagtggacactttgagaaagcacgagatgtgtatgaggaagccatcctcaca
gtggtaacagtaagggatttcacacaagtctttgatagttatgctcagtttgaagagagc
atgattgctgcaaaaatggagaccactgctgagatgggacaagaggaggaagatgacata
gacttggagcttagactggcccgctttgagcagctgatagctcgacgtcctttgctactg
aacagtgtgctactgaggcaaaacccccataatgttcatgagtggcacaaacgggtaaaa
ctgtaygaaggaactccacggcagatcatcaacacttacactgaagcagtgcaaaccata
gatccaatgaaggccactggaaagcctcattctctctgggtctcctttgctaaattctat
gaagaaaatgatcagctggatgatgctcggacaatctttgagaaggctacaaaagtgaac
tttaaacaggtggatgaccttgctgcagtgtggtgtgaatatggagaaatggagcttcgc
catgagaactatgatcaggcattgcgcatactgaggaaagctacagccatcccatccaag
aaagcagagtactttgattcatcagagccagttcaaaacagagtatacaagtccttgaaa
gtttggtccatgctggcagacttggaggaaagtcttggcactttccagtctacaaaagca
gtttacgaccgtattattgatctacgcattgccactccgcaaatcatcatcaactatgcc
atgtttcttgaagaacacaactactttgaggaaagctttaaggcatatgagcgagggatc
gctctcttcaagtggccaaatgtttatgacatttggaacacctacctgaccaagttcatc
gatcgttacggaggcaagaagttggagagagctcgggatttatttgaacaggcccttgat
ggctgccctgcaaagtttgcaaagaccatttacctgttgtatgccaaactggaagaggag
tatggattggcgcggcatgccatggctgtctatgaaagagcaacgcaggctgtggaaact
gaagagagacaccatatgttcaacatctacatcaaaagagcagctgaaatttacggagtt
acatatactagagcaatttatcagaaggctattgaggtccttccagatgagcatgcaagg
gagatgtgcctgcgatttgcagatatggagagcaaacttggcgagatwgaccgcgccaga
gcaatctactcctactgctctcagatctgtgatccaagggtgacagctcatttttggcaa
acctggaaagagtttgagatccgccatggaaatgaagacaccattcgagagatgttgagg
atcaaacgcagtgttcaggctacctataacacccaggtcaattttatgtcctctcaaatg
ctgaaggctacaacaagctccactggcactgtgtcagatcttgcgcctggtcagatggga
attgatgatatgaagatgttggagcagaaagcacagcaacttgctgcagaggctgagcaa
gacaaacccaaacctaaagaaaagattctgtttgtcaggagtgacacttctcgcagtgag
ctggcagagcttgccaaacaggccaatccagatgagatcaacattgatgaggatgaagat
gacgatgaacaaggaccagaggaggtgcagcttgagcagaagagcgtcccaacagcagtc
tttggagggcttacagatgactga
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