Austrofundulus limnaeus (annual killifish): 106529874
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Entry
106529874 CDS
T06063
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106529874 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106529874 (patl1)
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106529874 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
106529874 (patl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
106529874
NCBI-ProteinID:
XP_013880850
UniProt:
A0A2I4CLG8
LinkDB
All DBs
Position
Unknown
AA seq
783 aa
AA seq
DB search
MFRFQSLDDDCTLEEEEEAXVEEEDDIDQFNDDTFGAGAIDDDWQEEHKRLAELDERDGL
GAGLGSGGEEHPTSSDQPPLQSSLLPFSFSSSASGPPPPDERAGERGLAESLARLILEAD
PAIAGVGAAERPGPSPLRGLDPPPVQPQSSSIPQQKQLSGPSSSGPPPSMLSYQQHLLHR
GPAPVAQVNSHRIWDNNMGFGPVSVSPGLSTHMEDSPLVSIIKEVGVPKRPPEGRPDEGW
ALSERVPPPRSSSPVIGSPPVRAVPIGTPPKQPMSHALNHQIHHPTAVHIRAPVQHRYPA
PFPERLSPNGLLNLTNSPLCRGPFPPRVGPVLSQIQRAQLLNSQVGGFPRGGPAPPMLPG
GGFRPFFGGPPLAHGHRMGPPLAHGPPIRHNTTHLHPQHRRMLSQRLQSRGGDRSRTXLD
RRSRDPYSNLMSQKEKEWVTKIQMMQLQSTDPYLDDYYYQNYYEKMEKRQEKEQDSSRKK
EHTTKLITPQVAKVEHTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTTRSDDEEKREKQV
WNKRRQVLYTVEKMYSLLLEVQDFEKRFLQTPEEEREVLLEQHRTNTEQLCSSLREEWDD
RVSDELCVMIMSVRKGKRLISRLLPFLPSTQAAAVVMAIARNLPALAKKDKQEQVLCWLV
EPVSAVVQSLSSSALTDLLQELQGGEGQLTAVLQNKFAVTLLYLILGEGERMQSSDPNCQ
LMDDNRWTELVFSVTRELLAVPSSSLSPPLFSPPNLLSLFSRYVDRQRLELLEDKLQISA
SSR
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgatttcagtccctggacgatgactgtacgctggaggaggaagaggaggctstg
gtagaggaggaagatgacatcgatcagtttaatgatgacacgtttggagccggggccatc
gacgacgactggcaggaggagcacaaacgcctcgctgagctggatgagcgcgatgggttg
ggggcggggcttggatcaggaggagaggagcacccgacctcctcggaccaacctcccctc
cagtcctccctactgcccttcagcttctcctcctctgcctctggaccaccgcctccagat
gagcgagcaggagaacgaggtttggccgagtctttggcccgactcatcctggaggcggac
ccggccatcgctggggtcggagccgctgagaggcccggtccatctcctctgcgtggactg
gaccctcccccagtccagccgcagtcctcgtctatccctcagcagaagcagctgtctgga
ccctcctcctcaggcccccctccctccatgctcagctaccagcagcacctgctgcacaga
ggcccggctccagtggctcaggtgaactctcacaggatctgggacaacaacatgggcttt
ggcccggtcagcgtctctcctggactctccacacacatggaggacagtcccctcgtgtcc
atcatcaaggaggtgggggttcctaaaagacctcctgaggggaggcccgatgaaggctgg
gctctgtcagagagagttccacctcctcgctcctcctcccctgtcattggctctcctcca
gtgagggcggtgcctattgggactccgcccaaacagccaatgagccacgccctgaaccat
cagatccaccaccccacagcggtccacatcagagccccggtccagcaccggtaccccgct
ccgttcccggagcgtctgtctcctaatggcctcctgaacctgactaactccccgctgtgt
cgtggcccgtttcctcccagagtgggcccagttctgtctcagatccagagagcccagctg
ctcaactcccaggtgggcgggtttccccgcggtggccccgcccctcctatgttacctggt
gggggtttcaggccgttcttcggaggtccacctctggcccacggacacaggatgggccca
cctctggcccacggaccccccatccgtcacaacaccacacacctgcacccacagcaccgc
cgcatgctcagccagcgcctgcagagccgaggcggggaccgcagcaggacggrtctggac
cggcgcagcagggacccctacagtaacctgatgtctcagaaggagaaggagtgggtcacc
aagatccagatgatgcagctgcagagyactgacccgtacctggacgactactactaccag
aactactatgaaaagatggagaagcgtcaggagaaggagcaggacagcagcaggaagaag
gaacacaccaccaagctcatcacaccacaggtggccaaggtggagcacacctacaggccc
gttcagttcgccggctctctggggaagctgacggtgtcgagtgtcaacaacccgaggaag
atgatcgatgccgtggtgacgacccgatccgatgacgaggagaaacgagagaagcaggtc
tggaacaagaggaggcaggttctgtacacagtggagaagatgtacagcctgctcctggag
gtccaggacttcgagaagcgcttccttcagaccccagaggaggaacgggaggttctgttg
gagcagcacagaaccaacacggagcagctgtgcagctcactgagggaggagtgggacgac
agagtcagcgatgagctgtgtgtgatgatcatgtcggtgaggaagggcaagcggctcatc
tccaggctcctccccttcctgccttcaacacaagccgccgctgtcgtcatggcgatcgct
cgcaacctcccagcattggccaagaaagacaagcaggagcaggtgttgtgctggttggtg
gaaccggtttctgctgtsgttcagtcgctgtcaagctccgccctcacagacctgctgcag
gagytgcagggtggtgagggccagctgaccgccgttctgcagaacaagtttgccgtaacg
ctgctctacctgatcctgggcgagggagagaggatgcagagctccgacccaaactgtcag
ctgatggacgacaaccgatggacggagctggtcttctcggtgacgagggagctgcttgcc
gtcccgtcctcgtccttgtccccgcccctcttctccccccccaacctgctgtccctgttc
tcgcgctacgttgaccggcagagactggagctgctggaggacaagctacagatctctgct
tcatccaggtag
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