Austrofundulus limnaeus (annual killifish): 106530087
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Entry
106530087 CDS
T06063
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106530087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106530087
03036 Chromosome and associated proteins [BR:
alim03036
]
106530087
Enzymes [BR:
alim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106530087
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
106530087
mRNA degradation factors
5'-3' decay
Decapping complex
106530087
Chromosome and associated proteins [BR:
alim03036
]
Eukaryotic type
Gene silencing
piRNA pathway
106530087
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
106530087
NCBI-ProteinID:
XP_013881103
UniProt:
A0A2I4CM93
LinkDB
All DBs
Position
Unknown
AA seq
491 aa
AA seq
DB search
MATTRTESVGPLVLGLNKQNGQLRGLNRPASVPAPPTAPGKSLGALQKPGGANQDGGGGG
IKFGDDWKKSLQLPPKDNRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEE
SIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAMVMVPTRELALQVSQICI
QISKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVM
DEADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMVKHLQKPYEINLMEELT
LKGITQFYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIH
AKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRS
GRFGHLGLAINLITSEDRFNLKAIEEQLVTDIKPIPGSIDKSLYVAEFHSAGDDCEVEEV
EEKPEPRQHST
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggcracgacccggacagagagcgtgggcccgctggttctgggactgaacaagcagaac
gggcagctcagaggactcaacaggcccgcttcggtcccagccccgcccacggctccgggg
aagagtctgggcgctctgcagaaacccggcggcgccaaccaggacggcggcggcggcggc
atcaagttcggagacgactggaagaagagcctccagctcccgccgaaggacaacagggtc
aaaacctcggacgtcacgtccaccaagggcaacgagtttgaagattactgtctgaagagg
gagctgctgatgggcatctttgagatgggctgggagaaaccctcccccatccaggaggag
agcatccccatcgcgctgtccgggcgggacattctggctcgagccaagaacgggacgggg
aagagcggcgcctacctgatcccgctgctggagaggatcgacctgaagaaggaccacatc
caggccatggtcatggtgccaacacgtgagctggcgctgcaggtgagtcagatctgcatc
cagatcagcaaacacctgggaggagtcaaagtcatggcgaccaccggcggcaccaacctg
mgggacgacatcatgcgcctggacgagaccgtgcacgtggtcatcgccacccccggtcgt
attctggacttaataaaaaagggcgtggccaaagtggacagagtccagatgatggtgatg
gatgaggccgataagctgctctctcaggacttcgtggtcctcatcgaggacatcatcagc
ttcctggccaagaaccggcagatcctgctctactcggccaccttccccatcagcgttcag
aagttcatggtgaagcaccttcagaaaccgtacgagatcaacctgatggaggagctgact
ctgaagggcatcactcagttctacgcctacgtgacggagcggcagaaggtgcactgcctc
aacacgctcttctccaggcttcaaatcaaccagtccatcatcttctgtaactccacccag
agggtggagcttctggccaaaaagatcactcagctgggttactcctgcttctacatccac
gccaagatgatgcaggaatacagaaaccgagtgtttcacgacttcagaaacggactctgc
agaaacctggtctgcaccgatcttttcaccagaggaatcgacatccaggccgtgaacgtg
gtcatcaacttcgacttccctaaaaacgcagaaacgtacctccatcggatcggacgctca
gggaggttcggtcacctgggtctggccataaacctgatcacgtcggaggaccgcttcaac
ctgaaggccatcgaggagcagctggtgaccgacatcaagcccatccctggcagcatcgat
aagagcctctacgtggccgagttccactccgccggagacgactgtgaggtggaggaagtg
gaggagaagccagagccccgacagcacagcacctag
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