Austrofundulus limnaeus (annual killifish): 106530555
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Entry
106530555 CDS
T06063
Symbol
sympk
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03015
mRNA surveillance pathway
alim04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106530555 (sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
106530555 (sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alim03021
]
106530555 (sympk)
03019 Messenger RNA biogenesis [BR:
alim03019
]
106530555 (sympk)
Transcription machinery [BR:
alim03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106530555 (sympk)
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
106530555 (sympk)
U7-dependent histone pre-mRNA processing factors
106530555 (sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Adaptin_N
RRS1
Motif
Other DBs
NCBI-GeneID:
106530555
NCBI-ProteinID:
XP_013881645
UniProt:
A0A2I4CNR5
LinkDB
All DBs
Position
Unknown
AA seq
1150 aa
AA seq
DB search
MEVSSVKEGASGVINMTTSEKVVELLNHAALIPTDEKLNVLKQVQELIINKDPSLLDNFL
DEIIAFQTDKSIEVKKFVIGFIEEACKRDNELLLRLIANLNMLLKDESVNVVKKAILTLT
QLYKVALQWLVRAKVVSEMQEACWDLLTQMKEEVLIQLDSENDGVRTHAIKFTESLIITL
SPRTPESDVPKRQEGDISLDKVPTDHSYIRYAALCEEGKSALEKLLKFMVHPAISSINLT
TALGALATIARQRPMFMSEVVQAYETLHANLPPTLAKSQVSSVRKNLKLHLVAVLKHPCS
LEFQGQISTLLLDLGMPQSEIARYTPAPREQRKRPRYEQYAEGKKVKIEPPLIEDDEDKE
EPVPLVAPKPVVVPVAQSAIDLTAEFLHPLLTPDNVANMVLISMVYLPDVMPASFQATYT
PVESAGTDAQIKHLARLMATQMTAAGIGPGLEQCKATKEEPADPESAAGDFLIKRKVAPV
MVGQAISVVGGYQEKPTSSDLSAAKRLPEPILPSAQTKMAGAGGRKKVFRLADVVQPFSD
SKIEDLTSKAVRRILFSEKAIAQSGMSHVRVKLLSRLVTQFEGMMKEDVLEFILDDIRAR
SDLAFSLLYQEYNSYLSQLPSGLLDSYDHCLYTLLSGLQEKPEQRDGLFTKLVLEAPIIT
ESALEVIRRYCEDESRVYLGMTTLKELIDKRPSRQFQYLHVLLDLSSHEKDKVRSMALSF
LKRMYEKDQLRDYVERFALNYLQLLVHPNPPTLLFGADKDTEVAAPWTEDTVRQCLFLYL
SLLPLNHRLVHELASVYTEAIADIKRSVLRAIEQPIRGMGMNSPELLLLVENCPKGAETL
VTRCLHILTDKVPPSPELVERVRDLYHKRVPDVRFLIPVINGLEKMEVIQALPKLIKLNP
IVVKEVFNRLLGTQHGEGSSSVSPLTPGDLLIALHNIDSNKCDMKSIIKATNLCFAERNV
YTSEVLAVVMQQLMEQNPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIVKQVWKYPKVW
EGFVKCCQRTKPQSFSVLLQLPPXPLQSVFERCPDLRAPLLQHVLSFTPHQQAHIPTAVM
AVLEAHKKPEPEEPVREEEVFVLLRSSLSSGFIQELCALFRWNAVQLLRNNLPPWRRHNR
KYRCTRIPSS
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atggaggtttcttcagtcaaggagggagcttctggagtgatcaatatgaccaccagtgaa
aaggtggtggagctcctgaaccatgctgctctgattcctacagatgaaaaactaaatgtc
ctcaagcaggtccaggagctcatcatcaacaaagatccgtctcttctggacaatttcttg
gatgaaataattgctttccagacggacaagtctatcgaagtgaagaagtttgtcatcggc
ttcatcgaggaggcgtgtaaaagagacaacgagctgctgctcagactgatcgccaacctg
aacatgctgctgaaggacgaaagcgtcaacgtggtgaagaaggccatcctcaccctcacc
cagctgtacaaagtggcgctgcagtggttggtccgggccaaagtggtgtcagagatgcag
gaggcgtgctgggacctgctcacacagatgaaggaggaagttctgatccagctggactca
gagaacgacggcgtccgaactcacgccatcaagttcaccgaatcgttgatcataactctg
tcgcctcgaacgcccgagtccgacgtccccaaacgacaggaaggagacatcagcctggac
aaagtccccacagaccactcctacattcgctacgctgctttatgtgaggaggggaagagt
gcgctggagaagctgctgaagttcatggtccatccggccatttccagcatcaacctgacc
acagcgctgggcgctctggccaccatcgcccgccagaggcccatgttcatgtctgaggtg
gtgcaggcctacgagacgctgcacgcaaaccttcctccgacgctggccaagtctcaggtc
agcagcgttcgaaagaacctgaagctgcacctggtggcggtgctgaagcacccctgcagc
ctggagttccagggtcagatcagcaccctgctgctggacctgggcatgcctcagagcgaa
atcgcccgctacacccccgcgccgcgggagcagcgcaagaggcctcgttacgagcagtac
gccgaaggaaagaaggtcaagatagagccgccgctcattgaggatgatgaggacaaagag
gagccggtccccctcgtggcgccgaagccggtggtggttcccgtcgctcagtcggccatc
gacctgacggcagagttcctccaccctctgctgacccctgacaacgtagccaacatggtg
ctcatcagcatggtctacctgcccgacgtcatgcccgcctccttccaggccacctacacg
cccgtggagtcggccggcaccgacgctcagatcaaacatctggctcggctcatggccacg
cagatgacygccgccgggatcggacccggtctggagcagtgcaaggccaccaaagaggaa
ccagctgacccagaatctgctgctggggacttcctgatcaaacgtaaagtcgctcctgtc
atggtgggtcaggccatctctgtggtgggggggtaccaggagaaacccacctcctctgac
ctgtctgcagccaagaggctccctgaacccatcctgccctccgcccagaccaagatggcg
ggggccggcgggaggaaaaaggtgttccggttggcagacgtggtccagcccttttcagac
tcgaagatcgaagacctgacctccaaggctgtgaggcggattttattttcagagaaggcg
atcgctcagagcgggatgtctcatgtccgggtgaagctcctgtcccggctcgtcacgcag
ttcgaggggatgatgaaggaggacgtcctggagttcatcctggacgacatcagggcgagg
agcgacctggcgttctcgctgctctaccaggagtacaactcctacctgagccagctgccc
tcagggctgctggacagctacgaccactgcctctacacgctgctgtcgggcctgcaggag
aaacctgagcagcgggacgggctcttcaccaagctggtcctggaggcgcccatcatcaca
gagtctgcgctggaagtgatccgacgttactgtgaggatgagtctcgggtttacctgggc
atgacgacgctgaaggagctgatcgacaaacgtccctccagacagttccagtacctgcac
gtcctcctggacctcagctcacacgagaaggacaaggtgcgctccatggcgctgtccttc
ctgaaacgcatgtacgagaaggaccagctcagggactacgtggagaggtttgccctgaac
tacctgcagctcctcgttcacccgaacccaccgactctgctgtttggagccgacaaggac
acagaggtggcggctccttggactgaagacacggtgagrcagtgtctcttcctctacctg
tccctgctgcctctgaaccaccggctggtccacgagctggcctccgtttacaccgaggcy
atcgccgacatcaaacgcagcgtgctccgagccatcgagcagcccatccgggggatgggc
atgaactctcctgagcttctgctcctggtggaaaactgtcctaaaggggcggagactctg
gtgacgcgctgcctgcacatcctgactgataaagtgcctccgtcccctgagctggtggar
cgagtccgagacctgtaccacaaacgagttccagacgtccgcttcctgatccccgtcatc
aacgggttggagaagatggaagttatccaggctctgcccaaactgatcaagctgaacccc
atcgtggtgaaggaggtcttcaaccgcctgctggggacgcagcacggtgaaggaagctcc
tckgtgtctcctctgactccaggagatctgctcatcgccttacacaacatcgactccaac
aagtgtgacatgaagtccatcattaaagcgaccaacctgtgcttcgcggagaggaacgtg
tacacctcggaggtgctggcggtggtgatgcagcagctgatggagcagaaccccctcccc
atgctgctgatgaggaccgtcatccagtccctcaccatgtacccccgtctagggggcttc
gtcatgaacatcctgtcccgcctcatmgtcaaacaggtgtggaagtatcccaaggtgtgg
gaggggtttgtgaagtgctgccagcggaccaagcctcagtccttcagcgtgctgctgcag
ctgccgccggygccgctgcagagcgtgttcgagcgctgcccggacctgagggcgccgctg
ctgcagcacgtcctgtccttcacccctcaccagcaggcacacatccccaccgccgtcatg
gccgtgctggaagcccacaagaaacctgaacccgaggagcccgtcagggaggaggaggta
tttgttctgctcagatcgtctctcagctcaggctttattcaggaactttgtgcccttttc
aggtggaacgcagtccagctgctgcggaacaacctgccaccgtggcgcagacacaaccgc
aagtaccggtgcaccaggatcccatcgtcctga
DBGET
integrated database retrieval system
