Austrofundulus limnaeus (annual killifish): 106531100
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Entry
106531100 CDS
T06063
Symbol
exosc1
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106531100 (exosc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106531100 (exosc1)
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
106531100 (exosc1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
106531100 (exosc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
106531100
NCBI-ProteinID:
XP_013882320
UniProt:
A0A2I4CQQ0
LinkDB
All DBs
Position
Unknown
AA seq
194 aa
AA seq
DB search
MSPMKLCVPGDKLCSEEDCFPGTGVYQRHGYIYSALAGYVLKKNEGEKLPVISVVRETEA
QLLPDVGAIVTCKVTSINPRFAKVQILYVGSTPLKDRFRGTIRKEDVRATEKDKVEIYKS
FRPGDIVLAKVISLGDIQSNYLLTTAENELGVVVAHSEAGAQMIPISWCEMQCPWTQAKE
FRKVARVQPEYLQA
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgaagttgtgtgttccaggtgacaagctatgcagtgaagaagactgtttt
ccaggcacaggagtgtatcaacggcacggctacatatactctgcacttgcaggctacgtg
ctgaagaaaaatgagggagagaagctgccagtgatctcagtggtgagggaaacagaagca
caactcctgccagatgttggagccatagttacctgcaaggtgacgagcatcaaccccagg
tttgccaaagtccaaatcctttatgttggatccacaccgctgaaggaccgcttcagagga
acaatcaggaaagaggatgttcgagcaacagagaaagataaggtggagatatacaaaagc
ttcagacccggagacattgtcttggcaaaagtgatttctcttggggacattcagtcgaac
tacttgttgacgacggctgagaatgaactgggggttgtggtggctcacagtgaagcaggt
gcccaaatgattcccatcagctggtgtgagatgcagtgcccgtggacgcaggccaaagag
tttcggaaagtggcgcgcgtgcagcccgagtatctgcaagcgtga
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