KEGG   Austrofundulus limnaeus (annual killifish): 106532397
Entry
106532397         CDS       T06063                                 
Symbol
tdp1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
alim  Austrofundulus limnaeus (annual killifish)
Pathway
alim03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:alim00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    106532397 (tdp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:alim03400]
    106532397 (tdp1)
DNA repair and recombination proteins [BR:alim03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     106532397 (tdp1)
SSDB
Motif
Pfam: Tyr-DNA_phospho
Other DBs
NCBI-GeneID: 106532397
NCBI-ProteinID: XP_013883891
UniProt: A0A2I4CV72
LinkDB
Position
Unknown
AA seq 607 aa
MSQDSQHGKWTISSSDDDDDDENLPPSGTTASESRQTAESTRSSYRSASPVPVKAEPARP
PEVSLAVGSEARQSAARNQLNPVKPESSPSPARKRKKKEVSDGTGWALSDSDGDDGDVKK
NNPDNPQTKKPKVELERPPSPHGRLYYLDEPDDFFESSVPPLKDTYRFYLNKVTGLNRKY
NTGALHIRDILSPLFGTLKESVQFNYCFDIPWMVKQYPPEFRDHPVLIVHGDKREAKARL
LQQALPFSHVRFCQAKLDIAFGTHHTKMMLLWYEEGFRVIILTSNMIRADWYQKTQGMWM
SPLFPRLPEGSSPSAGESPTFFKRDLLDYLASYRAQELEEWIQRIKEHDLSETRVYLVAS
TPGRYVGSDMELWGHLRLRKLLHEHTNPIPGEERWPVIGQFSSIGSMGADKTKWLAAEFQ
RTLTTLGKSSLRPDPPMHLLYPSVDDVRLSLEGYPAGGSLPYSIQTAQKQLWLHSYFHRW
KANCTGRSHAMPHIKTYMRVSPDFTQLAWFLVTSANLSKAAWGALEKNNTQVMVRSYELG
VLYVPSAFNMKTFPVDKNPFPVTSSTSGFLVPFDLPPARYSSKDQPWIWNIPYSQEPDTH
GNIWVPS
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgtctcaggacagtcagcatggcaagtggaccatctccagcagtgatgatgatgacgat
gacgagaatcttcctccttctgggaccacagcatccgagtcccgtcagactgctgagtcc
actcgcagctcttataggtctgcctctccagtgccggtaaaagcagaacccgccagacct
ccagaggtttctctcgccgtcggctctgaggccagacagtcggctgcgaggaaccagtta
aatccagtcaagcctgaaagcagcccctcgccggctaggaagaggaagaagaaagaagtg
tcagacggcacaggctgggctctctcagacagtgatggagatgatggagatgtgaaaaag
aacaatccggacaacccgcagacaaaaaagccaaaagtggagcttgagcgtcctccgagt
cctcacggccggctgtactacctggatgagcccgacgacttcttcgagtccagcgttcct
cctctgaaagacacctacaggttctacctcaacaaagtcacgggactgaacaggaagtac
aacactggagctctgcacatcagagatattctctctccattatttggcacactgaaagag
tctgttcagtttaactactgcttcgatatcccttggatggtaaagcagtacccaccagag
ttcagggaccatcccgttcttatcgtccatggagataagagggaggccaaagcacgactg
ctgcaacaagcgctgcccttttcacacgtccgcttctgccaggccaagttggacattgct
tttggaactcaccacacgaagatgatgttgctgtggtacgaggaaggcttccgagtcatc
attctcacctccaacatgatcagagctgactggtaccagaagacacaagggatgtggatg
agccctctctttccacggttaccagaggggagcagtccaagtgcaggcgagtcgcccacc
ttcttcaagcgggacctgctggactacctggcgtcgtatcgtgcacaagaacttgaagag
tggatccaacggatcaaagaacacgacctgtcagagacgagagtttatttggtcgcttcg
actccagggaggtatgtcggttcagacatggagctctggggccacctgaggctgagaaag
ttgttgcatgagcacacaaatccaattcctggtgaagaaaggtggcctgtgattggccag
ttctccagcattggctccatgggagcagataagaccaaatggttggcggcagagtttcag
cgcaccctgaccacacttgggaaatcctctcttcgcccagatcctcccatgcatttgctt
tatccttcagtggatgatgtgaggctgagtttagagggctacccagctggcggctctctt
ccttacagcatccagacagctcagaaacagctctggctccactcctacttccatcgctgg
aaggcaaattgcacagggaggagtcacgccatgccgcacatcaaaacgtatatgagggtt
tcaccagatttcacacaactcgcttggttccttgtcacaagtgctaacctgtccaaggca
gcatggggcgcactggagaagaacaacactcaggtgatggtgcgttcatacgagctggga
gtcctctacgtaccgtcagcttttaacatgaagacgttccccgttgataaaaatccattt
cctgtcacgtcttccacctctggtttcctggtgccctttgacctccctcctgcaaggtat
tcttccaaagatcagccgtggatctggaacatcccgtacagtcaggaaccagatacacat
ggcaacatctgggttccctcttaa

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