Austrofundulus limnaeus (annual killifish): 106532640
Help
Entry
106532640 CDS
T06063
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04510
Focal adhesion
alim04512
ECM-receptor interaction
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106532640
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106532640
09142 Cell motility
04820 Cytoskeleton in muscle cells
106532640
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
alim04147
]
106532640
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106532640
Exosome [BR:
alim04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106532640
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106532640
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106532640
NCBI-ProteinID:
XP_013884218
UniProt:
A0A2I4CW38
LinkDB
All DBs
Position
Unknown
AA seq
1573 aa
AA seq
DB search
MEDVIPSVTLHPLWWILLLIIGAQQLSAGLTEGPCQGRDCSQCLCLPAKGAQGTPGKLGR
QGRQGPTGPVGAQGPPGEKGRRGAMGLCGPEGTNGDPGVTGLPGFTGHDGSQGHPGAGGE
PGLPGVDGCNGTGGQPGQPGLPGLDGLHGPPGIPGPKGSKGEPLYDGTLPGLPGERGTDG
DPGPPGRPGDIGHKGQIGPPGLPGFQGSDGLQGARGPPGDPGGSLRGTKGDTGEQGPPGP
PGPEEVVVLPPEFLPPKGVKGDKGLSGPCGPRGERGNTEEHASQKLKGEQGIPGFPGARG
PHGLPGRDGSTGAEGLPGNIGHPGLKGRIGEKGYLGDPGPPGPLLFXNASYVRGPKGDPG
YPGAPGLPGDPGYMGTPGPPGLPGHKEEQSLPGPQGLPGEKGNKGEPASYHDSLFPGPKG
EKGVPGVKGVTGLPGPPGCGDYYCEPGTPGEPGDHGSKGLHGNKGLRGIKGCPGECECAV
GIGSIGLPGLPGYPGPXGLPGAPGPKGDPGLQGTEGSRGPQGYQGITGSKGRKGQKGESF
VDSIKGAKGDTGEPGYSGPPGRTGRPGQEGIPGEEGEPGPPGQRNSGLPGPKGYPGPPGM
KGFPGSVGSPGPGFPGPVGIPGPQGNQGFPGLPGISGRPGPPGESDECCNEDPVGPPGSK
GEPGEPGIPGQPGRDGFPGIPGQPGPKGMKGDDSGTGGIGPEGPQGLNGDPGDPGPSGIS
LDGPQGLPGLPGSPGRKGAPGDNLYPRPGAPGATGPRGAVGSQGTIGTPGRPGLPGIQGQ
PGHLGSKGGPGDDGDPGATGPQGLPCTPCDLISSQGPPGPPGHPGIRGIPGYLGLKGARG
DVGLPGHGRKGSKGFTGNPGAPGPAGPRGTDGSPGDPGSDGLPGQKGERGYPGRPGTGGL
PGFPGPPGPSGKQGEQGFTGHPGVPGDSGIPGKKGMRGPPGFPGVSNIVNTVKGQTGSPG
NRGQIGQAGLPGPKGRRGVPGDLGTNGLYGLPGFKGPAGVPGRPGESGPPGYPGSKGFPG
PRGYPGLPGDRGDPGPPGNIGIPGLPGLPGVKGDQGQFYGTPGPPGPKGLPGENGPSAPR
GSPGDPGEPGPRGRPGQPGYQGSPGETGRQGGPGFPGPRGLAGHPGFPGPTGDQGVXGQP
GPPGSYGFPGQPGSPGLDGLDGLRGPKGMKGSSGIGIPGAPGQYGLPGVKGIRGPPGPPG
VTFPGPKGQSGAPGNTGPPGLPGEPGHPGTTCQTPFPGTQGDRGYEGPAGPPGPPGSPGL
PGSSILFKGDPGPVGPPGLPGCKGGRGLPGTPGPQNRYGLTGPKGVEGPAGPRGPTGHKG
QRGAPGPQGRKGETGLVGNAGAKGAPGDLITEGIGVAPPGLPGPHGAPGPVGFAGSVGPS
GPQGRKGEKGPKGSRGVPGGPGLPGLDGSVGDPGNIGVQGFPGPQGSPGLPGDPGDPGYR
GPLKSAFLLVVHSQSIHVPHCPLGSTQLWVGYSLVYLEGQEKAHTQDLGQPGSCLPVFST
MPFSYCDKAACYYSSRNDKSYWLSTTAPIPMMPLVGPEINIHISPQFSPPCLFPTVTKLP
ATTLAAMTNPTGS
NT seq
4720 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgttattccttctgtaactttgcatcccctatggtggatacttcttctgatt
atcggtgcacagcagctgagtgcaggactaactgagggcccatgtcaaggaagagactgc
tcacagtgtctttgtcttcctgccaaaggtgcacagggaactccagggaaacttggtagg
caaggtcgtcagggaccaacggggccagtgggagctcaagggccaccaggagagaaagga
aggagaggagcaatgggattatgtgggccagaagggacaaatggagatcctggagtgact
ggtcttcctggtttcactggtcatgatgggtcacagggtcacccaggggcaggtggtgag
ccaggtttgccaggggtggatggctgtaatgggacaggaggtcaaccaggacagcctggt
ttacctggtctggatggccttcatgggccaccaggaatacctggtccaaaaggaagtaaa
ggagaacctttgtatgatggtaccctgccaggtcttcctggagagcgtgggacagatgga
gaccctggtccacctggaagaccaggggacattggacataaagggcagattggtccacca
ggccttcctgggtttcagggttcggacgggcttcaaggtgcaagaggaccaccaggtgat
ccaggagggtcactccgtgggactaaaggtgacactggtgaacagggcccacctggtccc
ccaggaccagaggaagtggttgttcttcctccagagttccttccccctaaaggtgtcaag
ggagataaaggtctttctggaccatgtggaccaaggggggaaagaggtaatacagaagaa
cacgcaagtcaaaaacttaaaggagaacaaggaatccctggatttccaggagcaaggggt
cctcatggacttccaggtagggatggatcaacgggagcmgagggtttaccaggaaacata
ggacatccaggcctcaaaggaagaattggagagaagggttatctgggtgatccaggtcct
cctggtcctttgctgtttcmtaatgcaagttatgtgagaggtcctaaaggagaccctgga
tatccaggtgctcctggacttcctggggaccctggttatatgggcacacccgggcctccg
ggtctaccagggcacaaagaagagcaaagtcttcctggtccacaaggacttcctggagaa
aagggcaacaagggagaaccagcgagttatcatgatagcttatttccaggacctaaaggg
gaaaaaggagttccaggtgttaaaggagtcacaggcctcccaggtcctccaggatgtgga
gactattattgtgaacctggaaccccaggagaaccaggggatcatggatcaaaaggacta
catggaaacaaagggctcagaggaattaaaggttgtccaggggaatgtgagtgtgctgtt
ggcattggaagtatagggctcccgggtctacctggttatccaggcccccmaggcttacct
ggagctccaggacccaaaggagatccaggactccaaggaactgaaggctcaagaggccca
caaggctatcaaggaattacaggttcaaaaggaagaaagggtcagaaaggtgaatctttt
gtggatagtattaaaggtgctaagggtgacacaggagaacctgggtattctggtcctcct
ggtagaacaggtaggcctggacaggaaggtattcctggtgaggaaggggaacctggacca
ccgggtcagaggaattcaggattacctggtccaaaaggttacccaggtcctcctggaatg
aaagggtttccaggatctgtggggtcccctggccctggtttcccaggcccagtgggcata
cctgggcctcagggaaatcagggttttcctggactacctggaatttctggaagaccaggg
cctccaggtgaatcagatgagtgctgcaatgaagacccagttggcccaccaggttctaag
ggtgagccaggtgaaccggggataccaggccagccaggaagagatgggtttccaggaata
cctggacaacctggacccaaaggaatgaaaggagatgacagtggaactggagggattggg
ccagaaggacctcaaggtttgaatggggatcctggtgaccctggtcccagtggtattagt
ttggatggccctcaagggcttcctgggttacctggatccccaggaaggaagggtgcccca
ggagacaacctctatcctaggccaggtgctccaggtgctacaggacctcgtggagctgtg
ggatcccaaggaaccattggaactcctggaagaccaggattacctggcatacaaggccaa
ccaggacacctgggcagtaaaggaggacctggtgatgatggggatcctggagcaactggt
ccccaaggcctgccctgtactccttgtgatctgataagttcacaaggacctccaggacct
ccaggacaccctggaataaggggaataccaggctaccttggtctgaaaggtgcgagagga
gatgttgggctccctggccatggtcggaagggttcaaaaggttttactggtaatccaggt
gctccaggcccagctggaccwagaggtactgatggttctccaggagatcccggtagtgat
ggtttgccaggacaaaagggagagaggggctatcctggcagacctgggacaggaggcttg
ccaggatttcctggaccaccagggccaagtggtaaacagggagaacaaggttttaccggc
caccctggtgttccaggggattcaggaatacctggtaaaaaaggtatgcgtggacctcca
ggattcccaggagtttcaaatattgtgaacacagtaaaagggcagactggatctccagga
aacagaggtcaaattggccaggcaggacttccaggtccaaagggccgaagaggagtgcca
ggtgatttaggaaccaatggattgtatggcctcccaggatttaagggccccgctggtgtt
ccgggcaggccgggagaatctggaccacctggatatcctggaagtaaaggcttcccaggt
ccaaggggatatcctgggcttcctggagataggggagatccagggcctccaggaaacatt
ggtatcccaggacttccaggattacctggtgtcaaaggtgatcaaggacaattctatggg
acacctggtccacctggacccaaaggattgcctggcgaaaatgggcccagtgcacctaga
ggaagcccaggagatccaggtgagccaggaccaagaggaaggccagggcaacctggatat
caaggcagtcctggagaaacaggaagacaaggaggaccaggctttcctgggcctcgtggt
cttgcaggtcatccaggttttccaggtcctactggcgatcaaggagtcrtgggccaacca
ggaccccctggttcatatgggttcccaggacagcctggttcaccaggtctggatggattg
gatgggctaagaggtccaaaaggaatgaaaggatcaagtggaataggtattcctggtgct
cctggacaatatggccttcctggagtcaaaggcattagaggtccacccgggcctccagga
gtgacttttccaggacctaaaggccaaagtggggcacctggcaacacaggccctccaggc
ctgccaggtgagcctggtcaccctggcacaacatgtcaaacaccattccctggaacccag
ggtgacagaggatatgaaggacctgcaggaccyccaggaccacctggatcacctggatta
ccaggcagcagcattttattcaaaggagacccaggaccagttgggcctcctggattgcca
ggatgtaaagggggtaggggtcttccaggaactcctggacctcagaaccgctatggtctt
acaggaccaaaaggagtggaaggaccagccggtccaagaggccctacgggacacaaaggt
caaagaggtgcccctgggccacaaggccgcaaaggagaaactggccttgttgggaatgca
ggtgctaaaggtgcacctggtgacttaatcactgaaggtataggagtggctcctccagga
ctaccagggccacatggtgctcccggaccagttgggtttgcaggttctgtgggtccatct
ggacctcaaggaaggaagggagaaaagggtcctaaagggtctaggggtgttcctggtggg
ccaggtcttcctggtcttgatggttcagttggagacccaggaaatattggtgtacaagga
tttccagggcctcaaggcagtccgggtcttcctggtgatccaggtgacccaggctacaga
gggccactaaagtcagccttccttttggttgtccacagccagtcaattcatgtgccacac
tgccctttgggtagcactcagctttgggtgggatacagtcttgtttacttagaaggacaa
gaaaaagctcatacacaagatctgggtcagcctggttcttgtctcccagttttctccacc
atgcctttttcctactgtgacaaagctgcctgctactactctagccgcaatgacaaatcc
tactggctctccacgactgctcccatacccatgatgccacttgttggcccagaaataaac
atccacataagcccccagttttctccaccatgcctttttcctactgtgacaaagctgcct
gctactactctagccgcaatgacaaatcctactggctctc
DBGET
integrated database retrieval system
