Austrofundulus limnaeus (annual killifish): 106533100
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Entry
106533100 CDS
T06063
Symbol
spg11
Name
(RefSeq) spatacsin
KO
K19026
spatacsin
Organism
alim
Austrofundulus limnaeus (annual killifish)
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alim03400
]
106533100 (spg11)
DNA repair and recombination proteins [BR:
alim03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
106533100 (spg11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
106533100
NCBI-ProteinID:
XP_013884772
UniProt:
A0A2I4CXQ6
LinkDB
All DBs
Position
Unknown
AA seq
2380 aa
AA seq
DB search
MFEEAEPPRGCPSMEVAVVPENSCGQVEDILKAQLCPASCLLCCLSSGGQLELWDPASRE
ASLLRADGCFTDFSWEEVSAQSRGVSSFRLLAVGSQGELKLLEVEAEHSSSVSLLCECEC
PAVCVLNTIQEQNQNVDELQSVQVLCFVDGQCCVLVNSEWLLRLQWLQAEEETHTLLCCR
VQLTNGDPAVHHCICAETLFILSSMGLISVYNMTDGVLLATINLPAYLTSDLADGEVTSS
SFCRVQVSADLSTAVAVTQSHTAVAVDLNHYFRMYPDHLLCTIPQSCPPLQPKHSQDQDS
VSSSSCSLVALGSPFSDDRSWEARLASMYNRAVQPEACSSSQPAELCWSSSLLHLQSQLV
PSPVLSRAPPGGAVVVLSVPEPSSALLLSVSEFSVLLTFVTPGNRQTTVALWDLESGSVS
YHRAEGEAAPVQFCGERQHRLLLKKGGVVQVLFSVSQQDLLSRLMLFGSTATVDAVCHLN
SWGRCSIPFHTLKAGLKNRQLDTVDFYLKSKENVLNVGDQPSESRLSLTDGVKDLCPALD
LLCSAVRDSNSEAQSRQFSEQLLHITMSFIHTQIRSVLCSSQYDQPDVQSCVDMLDRYVT
ELRSYMKRFPWASSSATPLPQEEVESEEWLQLSTEEVVRQSILTNQIPRAQAVLRRSDRP
EQHLSALRMEGLRQVFSCLQHKDLQTAKTLLINMGLSVKKQLHSICIYTDDTTLRELLVE
ELSNQSSLSVEEMKSVVFIREMEKLGLLPAARCSPRTLSHRFPHMDHKGEGEKVLKELLD
QRRPEEMGDLWRNLRLDWVRNWDQSCQTAVLLSRLNHRELSCCDPPVLWGYLTALHDQRR
VVDWIQTQGSSSSPCWPEITPDLVNDNTLCSTLMREDILDLLARRGMFIPDEMSDLEQLF
WRLAQGGGLMASDPPLPQYRSSQGLDFHSMVIMFCLERNLQYLLYVYLQHYRLTPRNCPP
LTDQNLFKTHPWFEMLVKVQEITRDLSDPELVFHASLTSAQVLLPGSQASLSSLLLEGHS
LLVLAAIMFAPGGMDQVIAQGQRSGSLGRIVDPQLLKMALAPYPKLRAALFPAGSCGNGS
YSDISIYHLLQSLHPLDPSRLFGWQTANTLNLTETSELPHFSCPHLVSKFALLENLDFLY
YIRHGRPSFAYGNFLLQQLSACSDVKLQLQWAWQQVYSLVLKSFNLPSVTSAAVCFCELL
GICSLKLRVDVRAFNTILQHWNQQHRHTPAENLQALMYKAAKLVESESEVAEELIGYLEA
AASDSLEQRGINRSSYDAAQEWAGPVQFCQLHGLRLSPVYPSHCAEDGNFIHFLVFVQLH
NYPPQQVRSLVSQFGHSLEAHLNLVFQDLQVHSHRTDPDKHLGSLGTEETSENLEHPVEV
FQVLLQSQEEPVPCRYLLHKALDQRCPVLAVLAACVQKSETLACLCVWVLTSVDDVTAEE
ATSHLAEAPQHHEWSLHDLSIIWKTLLGRGLVRPLLHGFKLFQRECPLVLMLSMFELCCD
YRKFKEAKTKLLDFQKTLITLRNGVSAPSNSLPVQWVESHASVLLLMMLQRSSSQYDLHR
LLQLLAGVDNILKSTGPDFKKLSQLSQILQGSGVSLPSRLLQCSSTSVQQEEFQLTVDAL
QTRGHYSRARDVALLAGLPVHRLLLNQLSQEVTSQRTKQPWRRLEKRVTFWRKCHKQLEA
DSTDPESASQFFLSQSECGATDPPAGDEAQTRLLDIQEHCLLLQLTAHWLAQISPFPLDR
LEKLEKKLWLSRVQKDVLTAAMEQESMFNLPPAVSPETNAYQEFLREFSFSNIAELNVER
YLDLEGLPAPSQELQDESDLSVEERGVLTALVDQLLDEGRIHEASRVCRYFSLSHPDVWL
LLRCHALARGDLRPDPPEEPAEAADGQGIPTSSSRSSLSSFVLQLPEDTVSVQLQRLMAQ
CRRGSNYCKQVLSLYQLSKELQCTYHQICLDDPGCVLEKLLLLEQPDCFRKAQSFIRAQG
LGAEAVAELLSSAMVQALLASTQELQPGKKQIFRPSEGQDSLVQLIKLCDDPNLVGLRLL
ENLTTVPLRDLNCIVELLIVAHSCFSLTCNMEGIVRVLQAARHISHTYLAPGEHHSLLVR
LLTGIGRYNEMTYVFDLLHQNHCFEMLLRKKLDTERGQSSGLKMALLDYIKRFLPADSEK
HNMVALCFSMRREIGENHEMAARTQLKMIESRMWVVTPELKSSLNKVLALLKDAAESFSK
DSCVRQATRCVQTAKLVALQLHFLNQGADLRIINLRPAEMPAAIMALPRCYQVFVLSEAY
SYSPDWPDILYQKVVLKGDFVYLEELKRHRPLTSTLFEDIFRKLDSSPGSSTSNVKRLLT
YCDDAYTRYRLAYQQNLFDVTKTLLQDNKTSNYLNDRLAS
NT seq
7143 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaggaggctgagcctccccggggttgtccctccatggaggtggcggttgtccct
gagaacagctgcggacaggtggaggacatcctgaaggcacagctgtgtcctgcgagctgt
ctgctctgctgcctgtcttcagggggacagctggagctgtgggacccggccagcagagag
gcttccctgctccgagctgacggctgcttcactgacttctcctgggaggaggtgtcggcc
cagagtcgaggcgtcagcagctttcgtctgttagctgttggatctcagggtgagctgaag
ctgctggaagtggaagcagaacattcctccagtgtttctttgctctgtgagtgcgagtgt
ccagcagtctgtgtactgaacactatccaggagcagaaccaaaatgtggacgagctgcag
tctgttcaggttttgtgtttcgtggacggtcagtgctgcgtgctggtgaacagtgagtgg
ctgctacgtctgcagtggctgcaggcggaggaggaaacccacaccttactgtgctgcaga
gtccagctgaccaacggagatccagctgttcaccattgtatctgtgcagaaaccctcttc
atcctcagctccatggggctcatatctgtgtacaacatgacagacggcgtcctgctggcc
accatcaacctgcctgcctacctgacctctgacctcgcagacggagaggtgacctcttct
tcgttctgcagagtccaggtgtcagctgatctgagtacagctgtagctgtgacacagtca
catacggctgttgctgtagacctgaaccactacttcaggatgtatccggaccacctgctc
tgtaccatcccacagtcctgcccccctctgcaacccaagcattcacaggaccaagacagt
gtgtccagctccagctgcagtctagttgcccttggatctcccttcagtgatgaccgctct
tgggaagctcgtctggcttccatgtacaacagagccgtgcagcctgaagcttgctcctcc
tcccagcctgcagaactgtgctggtcctcctcgttgctccaccttcagtcccagctggtt
ccgtccccagtcctcagcagagctcctcctggaggggcagtcgtcgtcctgtccgtcccc
gaaccgtcctctgcattactgctcagcgtctcagagttctcggtccttctgacctttgtc
acccctggaaaccgacagaccacagtggccttgtgggatttggagtctgggagcgtgagc
taccaccgggccgagggcgaggcggctccagtccagttctgtggggagagacagcaccga
ctgctgctgaagaaaggcggtgtggtccaggtcctgttctctgtgagccagcaggacctg
ctgagcagattgatgctgtttggcagcactgcaacggtggatgctgtttgtcacctgaac
agctgggggcgctgctccatcccctttcacaccttaaaggctggactgaagaaccgtcag
cttgacacggtggatttttatctgaagagtaaagaaaatgtcctgaatgttggtgatcag
ccttcagagtccagactgagcctgacagatggggtgaaggacctgtgtcctgcattggac
ctgttgtgttcagcggtcagagactcaaacagtgaagctcagagtcgacagttttcagag
cagctgctgcacatcaccatgagcttcatccacacacagatcagatctgttctgtgctcc
tctcagtatgatcagccagatgttcagagctgtgtggacatgttggaccggtacgtcaca
gagttgaggagctacatgaagaggttcccctgggccagtagcagtgctactcctcttcct
caggaggaggtggagtcagaagaatggcttcaactttccactgaggaagtggtccgtcag
tccattctgaccaatcagatccccagagctcaggctgtgttgcggaggtccgatcggccg
gagcagcacctgtcggctctgaggatggaaggtctgcgtcaggttttctcctgcctgcag
cacaaagacctgcagactgccaagacccttctcattaacatgggtctgagtgtgaagaag
cagctccacagcatctgtatctacactgatgatacaaccctcagggaattattggtagaa
gagctgtccaatcagagctccttatctgtggaggagatgaagagcgttgtgttcatcagg
gagatggagaagcttgggttgctgccagctgcacgctgctcacctcggactttatcacat
aggtttcctcacatggaccataagggagaaggtgagaaggttctgaaggagctgctggat
cagaggaggcccgaggagatgggagacctctggaggaacctcagactggactgggtgagg
aactgggaccagagctgccagacagctgtgctcttatccagactgaaccatagagagctc
agctgctgtgaccctccagtgctgtgggggtatttgactgccctccatgaccagcggcgg
gtggttgactggatccagactcaggggtccagcagctccccatgctggccagagatcacc
ccagacctggttaacgacaacacgctgtgcagcaccctgatgagggaggacatcctggac
ctgctggccaggagagggatgttcatccccgacgagatgtcggacctggagcagctgttc
tggagactggctcaaggcgggggtctgatggcgtcagacccacctctccctcagtaccgc
tcctctcagggcctggacttccacagcatggtcatcatgttctgcctggagcggaacctg
cagtacctgctctacgtctacctgcagcattacagactcacacccaggaactgtcctccc
ctgacggatcagaacctgttcaagactcatccgtggtttgagatgctggtgaaggtccag
gagataaccagagacctgtcggaccctgaactggtgttccacgccagtttgaccagcgct
caggtgctgctacccggcagccaggcctctttgagcagtctgctgttggagggacacagt
ctgctggtgctggctgccatcatgttcgctcctggtggaatggatcaggtgatagctcag
ggtcagaggtcaggcagtctggggagaatagtggacccccagcttctgaagatggccctg
gccccttatcccaaactgagagctgccctgtttcctgctgggtcctgtggaaacggctca
tattctgacatttccatttatcatctcctgcagtctcttcatcctttagacccatccaga
ctgtttggctggcagactgcaaacactctgaacttaactgaaacatcagagttgcctcat
ttctcctgccctcaccttgtgagcaagttcgctttattggagaacctggactttctgtac
tacatccgtcatggccgaccttcctttgcatacggcaacttccttctccagcagctcagt
gcctgcagtgacgtgaagctgcagctgcagtgggcctggcagcaggtgtacagcttggtt
ctgaaaagtttcaaccttccatctgtgacatcagcagctgtttgtttctgtgagctgctg
ggaatctgcagcctcaagctgagagtcgacgttcgagccttcaacaccatcctgcagcac
tggaaccagcagcaccgacacactcctgcagaaaatctacaggctttgatgtacaaagct
gcaaaactggtggagtcggagtctgaagtagcggaggagctgattggttacctggaagct
gcagcctcagatagtttggagcaaaggggcattaacaggtcgtcatacgatgcagctcag
gagtgggcggggcctgttcagttctgtcagctacacggtttgaggctcagtccggtttat
cccagccactgtgctgaggatggaaacttcatccacttcttagtgtttgtgcagcttcac
aactacccacctcagcaggtccggtccctggtctctcagtttggccactcgctagaggcc
cacctgaatctggtgtttcaggacttgcaggttcacagtcacagaacagaccctgacaaa
catttaggatctctggggacagaagagacttctgagaatctggaacatcctgtggaggtg
ttccaggtcctccttcagagccaggaagagcctgtaccatgccggtacctcctgcacaag
gccctggaccagcgatgtccggttctagcagtactggctgcctgtgtgcagaaatctgag
acgctggcgtgtctttgtgtgtgggtgctgacctctgtggatgatgttactgctgaagaa
gccacgtctcacctggctgaagcgccccagcaccacgagtggtccctgcatgacctgtca
atcatctggaagacgctgctggggcggggcctcgtcagaccacttctccatggctttaag
ctctttcagagggaatgccctctggttttaatgctgagcatgtttgagttgtgctgcgac
tacaggaaattcaaagaggccaaaacgaaattactggacttccaaaagacgctcattaca
ctcagaaacggcgtctcggctccgtctaacagcctgccggtgcagtgggtggagagccat
gcctctgtgctgctgctcatgatgctgcagcgctcctcctctcagtatgacctccatcgc
ctgctgcagctgctggctggtgtcgacaatatcctcaaatccactggtccagacttcaag
aagctaagtcagctgagtcagattcttcagggctcaggagtcagtctcccatccagactt
ctccagtgcagttccacttctgtccagcaggaggagttccagctcactgtggatgctctc
caaaccagaggccactacagccgggccagggatgtggcccttttggctggcctgcctgtc
catcgcctcctcctgaaccagctctctcaggaagtgacctcccaaaggactaaacagccg
tggaggcgcctggagaagcgggtcacgttctggaggaagtgtcacaagcagctggaagcc
gacagcactgatccagagtcagcctctcagtttttcctatctcagagtgagtgtggggcc
accgacccccctgctggtgacgaggcccagacgaggctgcttgatatccaggagcactgt
ctgctgctccagctcacggctcactggctcgctcagatcagcccgtttcctctggacaga
ctagaaaaactggagaagaagctgtggctcagccgtgtccagaaagatgtcctcactgct
gcgatggagcaggagagcatgtttaacctgccgccggccgtcagcccggaaaccaacgcc
taccaggagttcctcagggagttctccttctctaacatagcggagctgaacgtggagcgg
tacctggatctggagggcctcccggctccctcccaggagctgcaggatgagtctgacctg
agtgtggaggagagaggggtcctcacagcactcgtcgatcagttactggatgagggcagg
atccatgaagccagccgtgtctgccgctacttctccctgagccacccagacgtgtggctg
ctgctgcgctgtcacgccttggcacgtggagacctgagacctgacccgccagaggagcct
gcagaagctgcagatggacagggcatccctacatcctcctcacgcagcagcctgtcctcg
tttgtcctgcagctccccgaggacacggtctcagtccagctccagagactgatggctcag
tgtcgccgtgggagcaactactgcaaacaggttctgagtctgtatcagctctccaaggag
ctgcagtgtacgtaccatcagatctgcctggacgaccctggctgtgttctggagaagctt
ctgctactggagcagccggattgtttcaggaaggctcagagcttcatcagagctcagggt
ctgggtgctgaggctgtggcagagctgctgtcctctgctatggtccaggcgctgctggcg
tccacccaggagctgcagcctggaaagaagcagattttcaggccgtcagaaggccaggac
tctctggtgcagctgatcaaactgtgtgatgaccccaacctggtgggactcagactgctg
gagaacctcaccaccgttcctctgagagacctgaactgcatcgttgagctgctgattgtg
gctcacagctgtttcagcctcacctgtaacatggaggggatcgtcagggtgctccaggct
gctcgtcacatcagccacacctacctggctccaggagagcaccacagcctgctggtgcga
ctgttgacaggtattggccgatataatgaaatgacgtacgtctttgacctgctacatcag
aaccattgttttgagatgctcctcagaaagaagttggacacagagagaggacagagctcc
ggtctgaagatggctctgctggattacatcaagcgcttcctccctgcagacagtgagaag
cacaacatggtggcgctgtgtttcagtatgaggagggagatcggagagaaccatgagatg
gcagccagaacgcagctgaagatgatcgagtctcgaatgtgggtcgtcactcctgagctg
aagagttcgttgaacaaagtgttggctctgctgaaggatgctgctgagagcttctccaag
gactcgtgtgtacgtcaggccactcgttgtgttcagactgctaaactggttgctctccag
ctgcacttcctgaaccagggagctgacctgcgcatcatcaacctccggcctgcagagatg
ccagctgccatcatggctctgcccagatgttatcaggttttcgtcttgtccgaggcgtac
tcctacagtccagactggcctgacattttgtaccagaaggtggtcctgaagggagacttc
gtttacctggaggagctgaaacgccaccgccccctcacctccactctttttgaagacatc
tttaggaagctggacagctcccctggcagctccacctccaacgtgaagcgcctgctgacc
tactgtgatgatgcatacactcggtacagacttgcctaccagcagaatctgtttgacgtc
accaagacattgctgcaggacaacaaaacttccaactacctaaatgatcggcttgccagc
tga
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integrated database retrieval system
