Austrofundulus limnaeus (annual killifish): 106533303
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Entry
106533303 CDS
T06063
Symbol
scn8a
Name
(RefSeq) sodium channel protein type 8 subunit alpha isoform X1
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
106533303 (scn8a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
alim04040
]
106533303 (scn8a)
Ion channels [BR:
alim04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
106533303 (scn8a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
HpsJ
GPHH
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
106533303
NCBI-ProteinID:
XP_013885013
UniProt:
A0A2I4CYE3
LinkDB
All DBs
Position
Unknown
AA seq
1965 aa
AA seq
DB search
MAAPLLAPPGPDSFRKFTRESLEVLEQRLKEEKNKKPPKQDSSYRDDDDENKPKPNSDLE
AGKSLPYIYGDVPKGMVTVPLEDLDPFYLNSQKTFIVLNRGKTIFRFSATPALYFISPFN
PVRQIAIKILIHSLFSMIIMCTILTNCIFMTFSDPPEWSKQVEYTFTGIYTFESLVKITA
RGFCIDNFTFLRDPWNWLDFMVISMAYITEFVNLGNVSALRTFRVLRALKTISVIPGLKT
IVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVIWPINLNETYLNNGSKG
FDWEEYINNDTNFYILHGQLDALLCGNSSDSGRCPEGYTCMKAGRNPNYGYTSFDSFGWA
FLALFRLMTQDFWENLYMLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQ
ATMEEAAQKEEEFKAMLEQLKKQQEEQTAPPATSAGTVSEDAVEDDGGGRLSVSSSEMSK
LSSKSAKERRNRKKKWRQKEQEKEKGDSEKFVKSESDDGSKRSRFRFPDNRLGRKSSIMN
QSLLSIPGSPFLSRHNSKSSIFSFKGRGKDMGSETEFADDEHSTVEECEERRGSLFSPYR
RNSYTGFHGKRNSTVDCNGVVSLIGPGPGGRLLPEVKIDKAASDDSPTTEVEVKKKLSGS
LMVSVDQLNTSFGRKERANSVMSAITNTLAEELEESQRKCPPCWYKFSNTFLIWECCPLW
IKIKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHYPMTPDFEDMLSVGNLVFTGIFAGE
MLLKLVAMDPYYYFQEAWNCFDGFIVTLSLVELALADVEGLSVLRSFRLLRVFKLAKSWP
TLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKDCVCKISESCELPRWHM
NDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLIVFMMVMVIGNLVVLNLFLALLLSS
FSADNLAATDDDGEPNNLQISVMRIKKGIAWIKAKMRLLVASLLRKPPMEDEQKPLDDMY
DKKVNYIGNHTGVDINRDLDYAKNGNGTTSGIGSSVGKYMIDEDHMSFIHNPNLTVCVPI
AVGESDFENLNTEDFSSESDIENSKELDDTSSSEGSTIDIKPDVEEVVVVETVEEYMEPE
ACWTDACVAKYKCCYLDITVGWGKSWWYLRKTCYLIVEHNWFETLIIFMILLSSGALAFE
DVYIEQRKTVRIILEYADRVFTYIFILEMLLKWVAYGFVKYFTNAWCWLDFFIVDVSIVS
LVANALGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFW
LIFSIMGVNMFAGKYYYCFNETSEEYFSVNVVNNKTQCEALISENHTEVRWKNVKINFDN
VGAGYLALLQVATFKGWMDIMYAAVDSRAVEDQPDYEVNIYMYIYFVVFIIFGSFFTLNL
FIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPQNKVQGLVFDF
VTQQVFDISIMILICLNMVTMMVETDDQSEQTETVLYWVNFIFIVVFTTEFLLKLFALRH
YYFTNGWNIFDVVVVILSIVGMFLADIIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIR
TLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFGYVKHGAGIDDLYNFETFGNSMIIL
FMITTSAGWDGLLLPILNYPPDCDLNLENPGTSVKGDCGNPSVGIFFFVMYIIISFLIVV
NMYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPTASQFISFAKLPDFADALEHP
LRVPKPNTIELIAMDMPMVSGDRIHCLDILFAFTKRVLGDSGELDMLRTQMEERFVAANP
SKVSYEPITTTLRRKQEDVSARTIQNAYRAHLIRRGIIFKRILSSNRLENGGANQEKKES
TPSTASLPSYDSVTKPDKEKQDKSKEDWAKKEKDKNQKEEWESKC
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atggctgcaccccttctcgcaccgccaggacctgatagcttcaggaagtttacgagggag
tctttggaggtccttgagcagcgcctcaaagaggagaagaacaagaagccgcccaagcag
gacagcagctaccgcgacgacgatgacgagaacaagcccaaacccaacagcgacttggag
gccgggaagagcctgccctacatctacggggacgtccctaaaggaatggtgacggtaccc
ctggaggatctggatccattctacctgaattctcagaaaacatttatagtgctaaacaga
gggaagacaatcttccgttttagtgccacacctgccttgtacttcataagtcctttcaat
ccggttaggcaaatagctattaaaattttgatacattctcttttcagcatgatcatcatg
tgtactattttgaccaactgtatattcatgacctttagtgatcctcccgagtggtcaaaa
caagtagagtacacattcacaggaatttatacgtttgaatctcttgtaaaaatcacagct
cgagggttctgtatagacaatttcacattcctaagagatccatggaactggctggatttc
atggtcatttcgatggcgtatataacagagtttgtaaacctaggcaatgtctcagctctg
cgcacgttcagggtgttgagggcattgaaaactatttctgtaattccaggcctgaagacc
attgtgggtgccctgatccagtctgtgaagaagctctcagatgtgatgatcctgaccgtc
ttctgcttgagcgtctttgccctgatcggtctccagctcttcatgggcaatctgcgacaa
aagtgcgtgatctggccaatcaaccttaacgagacttacctgaacaacggcagcaagggc
tttgactgggaggagtacatcaacaatgataccaatttctacatcctgcatggccagttg
gatgctctgctytgcgggaacagctctgactctggccgctgcccggagggctacacgtgc
atgaaagctggcaggaatccaaactacggctacaccagctttgacagcttcggctgggcc
ttcctggccctcttccgactcatgacgcaggacttctgggaaaacctttacatgctgacc
ctgagggcagcagggaaaacctacatgatcttcttcgtcttggtgatctttgtgggctcg
ttctacctggtgaatctgattctggctgtggtcgccatggcatatgaggagcagaaccag
gccaccatggaggaggctgcgcagaaggaggaagaattcaaggccatgttggagcagctg
aagaaacagcaggaggagcagactgctccccctgcgacctccgccggcacagtgtcagag
gatgcagtggaggatgatggaggagggcgtctgtccgtcagctcctctgagatgtcaaag
ctcagctcgaaaagtgccaaagagcgccgcaatcgcaagaagaagtggcgacagaaggag
caggagaaggagaaaggcgacagcgagaagtttgtcaagtcagagtcagatgacggcagc
aaacggagccgcttccgtttccctgataaccgcctgggtcgaaagtcttctattatgaac
cagtctctcctgagcatacccggctcgcccttcctctcccgtcacaacagcaagagcagc
atcttcagttttaagggccgaggtaaggacatgggctcggagaccgagttcgcggacgac
gagcacagcacggtggaggagtgcgaggagcgccgcggctccctcttcagcccctaccgg
cggaacagctacacgggcttccacgggaagaggaacagcacggtggattgcaatggagtg
gtgtcactcattggccccgggcctggcggacgccttctgccagaggtgaaaatagataag
gcagcttctgacgacagtcccactactgaggttgaggtgaagaagaagctgtcgggctcc
ctgatggtgtctgtggaccagctcaatacctcctttgggcggaaagagcgggccaacagt
gtcatgagcgccattaccaacacactagcggaggaactggaggagtctcagcgcaagtgt
ccgccatgctggtataagttttctaacacattcctgatctgggaatgctgccccttatgg
attaagatcaaggagattgtaaacctgatagtcatggatccctttgtggacttggccatt
actatctgtattgttctcaacaccctcttcatggccatggagcactaccccatgacgccc
gactttgaggacatgctgtctgtaggcaatctggtattcacagggatctttgcaggagag
atgcttttaaagcttgtggccatggatccatactactacttccaggaggcctggaactgc
ttcgatggatttattgtcacgctgagtttagtggagctggctctggctgatgttgagggt
ctctctgtgctgcggtcattcagattgctgagagtgtttaaactggccaagtcgtggccc
accctcaacatgctgattaagatcattggcaactcagtgggagcgttgggaaacctgact
ctggtgctggccatcatcgtcttcatctttgctgttgtgggcatgcagctgttcggaaag
agctacaaagactgcgtgtgcaagatctctgagagctgcgagctgccccgctggcacatg
aacgacttcttccactcttttctgatcgtctttcgggttctgtgtggggagtggatcgag
accatgtgggactgcatggaggtggcgggccaggcgatgtgcctcatcgtcttcatgatg
gtcatggtcatcggtaaccttgtggtgttgaacttgttccttgccctgctgctgagctcg
ttcagcgccgacaacttggctgcgacggacgacgacggcgagcccaacaatctgcagatt
tccgtcatgcgcatcaagaaaggcattgcgtggataaaggcgaagatgcggctgctggtg
gcgagcctgctcaggaagccgccgatggaggatgagcagaagcctctagatgacatgtat
gacaagaaggtgaactacattggcaatcacacgggcgtggacattaaccgtgacctggac
tatgccaagaatggcaacggcaccaccagcggtattggcagcagcgtggggaagtatatg
atcgacgaggaccacatgtcgttcatccacaacccgaatctgacggtttgtgtgcccatc
gctgtgggagagtccgactttgagaacctcaacacagaggacttcagcagtgagtccgac
atcgagaacagcaaagagctggacgacaccagttcctcagaaggcagcaccatcgacatc
aagccagacgtagaggaggtggtggtggtggagacggtggaggaatacatggaaccagaa
gcatgttggacagatgcctgtgtggccaagtataaatgctgttaccttgacatcaccgtg
ggctgggggaaaagctggtggtacctgaggaaaacctgctacctgatcgtggaacacaac
tggtttgagaccctcatcatcttcatgatcctcctcagtagtggagctctggcctttgag
gatgtgtacattgagcagaggaagaccgttcggatcattctggagtacgccgacagggtt
ttcacttacatcttcatcctggagatgttgctgaagtgggttgcttatggtttcgtcaag
tatttcaccaacgcctggtgctggctggacttcttcattgtggatgtgtctatagtcagc
cttgtagctaatgcgctgggctactccgatctagggcccattaaatcactcaggacacta
agggccttgagacccctcagagccttgtcacgttttgaagggatgagggtggtagtcaac
gccttggtgggtgccatcccttccattatgaatgtgttgctggtttgcctcatcttttgg
ctgattttcagtatcatgggggtcaacatgtttgcgggcaagtactactactgtttcaat
gagacgtcagaggaatacttttccgttaacgtggtcaacaacaagacccagtgtgaggca
cttattagcgagaaccacactgaagtcaggtggaagaacgtcaagatcaactttgacaac
gtgggcgccggctacctcgccttgttgcaagtggccacattcaaaggctggatggacatt
atgtacgctgctgtggattccagagcggtggaagaccagcccgactatgaagtcaacatc
tacatgtacatctactttgttgtcttcatcatatttgggtccttcttcactctcaacctc
ttcattggtgtgatcattgacaacttcaaccagcagaagaaaaagtttggaggtcaggat
atcttcatgacagaggaacaaaagaagtactacaacgcaatgaaaaagttagggtccaaa
aaacctcaaaaacctatccctcgaccgcagaacaaggtccagggactggtgtttgacttt
gtgacacagcaagtctttgacatctccattatgatcctaatctgcctgaacatggtcacc
atgatggtggagacagatgatcagtcagaacaaacagaaacagtcctctactgggtcaac
ttcatctttattgtagttttcactacggagttcctgctgaagctattcgccctgcggcat
tattacttcaccaatggatggaatatctttgatgtggtggtggtcattctgtccattgtg
ggtatgttcctggctgacatcattgagaagtactttgtgtcaccgaccttgttcagggtg
atcagattggctcgaatcggccgtattcttcggctcatcaaaggagccaagggcatccgg
actctactctttgccctgatgatgtccttgccagctctgttcaatatcggcctgctgctc
ttcctggtcatgtttatcttctccattttcggcatgtccaactttggctatgtgaaacat
ggagccggcattgatgacttgtacaactttgaaacctttggcaacagcatgatcatcttg
tttatgatcaccacatctgctggctgggacggcctgttgctgccaatcctcaactaccca
ccggactgcgacctcaacttggagaaccctggtacttcagtgaagggtgactgtggtaac
ccctctgtagggatcttcttttttgtcatgtacataatmatttctttcctgattgtggtt
aatatgtacatcgccatcatcctggagaacttcagcgtggccacagaggaaagtgctgat
ccactcagcgaggatgactttgaaaccttctatgagatctgggagaagtttgatcccact
gcctctcagtttatcagttttgccaagctgcctgactttgctgacgctttggagcacccg
cttcgggtgccaaagcccaacaccatagaactaatagccatggacatgcccatggtgagt
ggtgatcgcattcactgcctggacatcctgtttgccttcacaaagcgtgtgctgggtgac
agtggtgagctggacatgctgaggacacagatggaggagcgttttgtggcggccaacccc
tccaaggtgtcatacgaacccatcaccaccaccctccgccgcaaacaggaggacgtttct
gccagaaccatccagaacgcctatcgtgctcacctgatcaggcgcggcatcatcttcaag
cgcattctgtccagtaacaggctggagaatggaggggccaaccaagagaagaaggagagc
acaccgtccactgcctcgctgccgtcgtacgacagcgtgaccaaacctgacaaagagaag
caggacaaaagcaaagaagactgggccaaaaaagagaaagacaaaaatcaaaaagaggag
tgggaatccaagtgttag
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integrated database retrieval system
