KEGG   Austrofundulus limnaeus (annual killifish): 106533712
Entry
106533712         CDS       T06063                                 
Symbol
thoc3
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
alim  Austrofundulus limnaeus (annual killifish)
Pathway
alim03013  Nucleocytoplasmic transport
alim03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:alim00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106533712 (thoc3)
  09122 Translation
   03013 Nucleocytoplasmic transport
    106533712 (thoc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:alim03019]
    106533712 (thoc3)
   03041 Spliceosome [BR:alim03041]
    106533712 (thoc3)
Messenger RNA biogenesis [BR:alim03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     106533712 (thoc3)
Spliceosome [BR:alim03041]
 Complex C
  Other components
   EJC/TREX
    106533712 (thoc3)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    106533712 (thoc3)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_WDHD1_1st WDR55 ANAPC4_WD40 Beta-prop_Aladin Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_IFT140_1st eIF2A WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_Vps41 Beta-prop_WDR36-Utp21_1st DSE1_N WD40_RFWD3 RMC1_N Beta-prop_WDR35_TULP_N Beta-prop_NOL10_N Beta-prop_TEP1_C NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_HPS5 Tricorn_2nd WDR90_beta-prop_4th PAC11 Beta-prop_ACSF4 PD40 TRM82_WD B-prop_COPA_B_2nd Beta-prop_WDR75_1st Beta-prop_EIPR1 ASA1 Beta-prop_SPT8 Beta-prop_NUP159_NUP214 Beta-prop_WDR41 Peptidase_S9_N Beta-prop_Nup120_160 Cytochrom_D1 Beta-prop_NWD2_C WD_LRWD1 Beta-prop_SCAP Beta-prop_WDR11_1st YNCE TP_0598_N DPPIV_N Beta-prop_ELP1_1st PROPPIN Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 106533712
NCBI-ProteinID: XP_013885589
UniProt: A0A2I4D029
LinkDB
Position
Unknown
AA seq 322 aa
MSSRYYQEMQESFKNNSKSREFPAHTAKVHSVAWSCDGRRLASGSFDKTASVFVLEKDRL
VKENNYRGHSDSVDQLCWHPTNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICW
SPDGQTIAVGNKDDVVTFIDAKTHRTKAEEQFKFEVNEISWNNDNDMFFLTNGNGCINIL
SYPDLKPIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWDVDELVCVRCFSRLDWPV
RTLSFSHDGRMLASASEDHFIDIAEVETGEKLWEVQCDSPTFTVAWHPKRPLLAYACDDK
EGKYDNNREAGTVKLFGLSNDS
NT seq 969 nt   +upstreamnt  +downstreamnt
atgtcgtcccggtactaccaggagatgcaggaaagcttcaaaaacaacagcaaaagccgg
gagttcccggctcacaccgccaaggtccactcggtggcctggagctgcgacggcaggaga
ctcgcgtccggctcgtttgataaaacagccagcgtttttgtcctggaaaaggaccgtctg
gtgaaggagaacaactacagaggccacagcgacagcgtggatcagctctgctggcacccc
accaacccggacctgttcgtcacagcgtccggagacaaaaccatccggatctgggacgtg
cgcaccaccaaatgcatcgccaccgtcaacacaaagggtgagaacatcaacatctgctgg
agccccgacggtcagaccatcgccgtggggaacaaagacgacgtggtgaccttcatcgac
gccaagacgcatcgcaccaaagctgaggagcagttcaagttcgaggtgaacgagatctcc
tggaacaacgacaacgacatgttcttcctcaccaacggcaacggctgcatcaacatcctc
agctacccggatttgaagcccatccagtccatcaacgctcacccgtccaactgcatctgc
atcaagttcgaccccacggggaagtacttcgccacgggaagcgccgacgccctggtgagc
ctgtgggacgtggacgagctggtgtgcgttcgctgcttctccaggctggactggccggtg
aggacgctgagcttcagccaygacggcaggatgctggcctcggcctccgaggatcatttc
atcgacattgccgaggtggaaacaggagagaagctgtgggaggtgcagtgcgactctccc
accttcacggtggcctggcacccgaagcgccccctgctggcctacgcctgtgatgacaag
gagggcaagtacgacaacaaccgcgaggcgggaaccgtcaagctgttcggcctctccaac
gactcctga

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