Austrofundulus limnaeus (annual killifish): 106533717
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Entry
106533717 CDS
T06063
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03020
RNA polymerase
alim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106533717 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
106533717 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alim03021
]
106533717 (polr2b)
03400 DNA repair and recombination proteins [BR:
alim03400
]
106533717 (polr2b)
Enzymes [BR:
alim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106533717 (polr2b)
Transcription machinery [BR:
alim03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
106533717 (polr2b)
DNA repair and recombination proteins [BR:
alim03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
106533717 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
106533717
NCBI-ProteinID:
XP_013885593
UniProt:
A0A2I4D041
LinkDB
All DBs
Position
Unknown
AA seq
1174 aa
AA seq
DB search
MYDQDEDNQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDHLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENEDDLDVSNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMST
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaccaggacgaagataatcaatacgatgaagatgatgatgagatcactccggat
ctgtggcaggaggcttgctggatcgtcatcagctcttattttgacgagaagggcctggtg
cggcagcagctggattcgttcgacgagttcatccagatgtccgttcagaggatcgtagaa
gatgctccgcccatcgacctgcaggccgaggcccagcacacctcgggggaggtggaggag
ccgcctcgttacctgctgaagttcgagcagatctacctgtccaagcccactcactgggag
agagacggcgctccttctcccatgatgcccaacgaagcccgactgcgaaacctcacgtac
tccgcccccctgtacgtcgacatcacaaagaccatcataaaggaaggtgaggatcacctg
cagacgcagcaccagaagaccttcatcggtaaaattcccatcatgctccgctccacgtac
tgcctgctgagcggcctgacggaccgagatctgtgcgagctcaacgagtgtccgctggac
cccggagggtatttcatcatcaatggctcggagaaggtgctgatcgctcaggaaaagatg
gccaccaacaccgtttacgtcttcgccaagaaggattccaaatacgcctacacggccgag
tgtcggtcctgtttggagaactcgtctcgtcccaccagcaccatctgggtcagcatgatg
gccagaggaggccagggagtgaagaagagcgcgatcggtcagaggatcgtgtccacgctg
ccgtacatcagacaggaagtccccatcatcattgtgttccgggcgctgggcttcgtgtcg
gacagagacatcctggaacacatcatctacgacttcgacgaccccgagatgatggagatg
gtgaagccgtctctggatgaggcattcgtgatccaggagcagaacgtggccctgaacttc
atcggttccagaggagcgaagcccggagtgacgaaggagcggaggatcaaatacgccaaa
gaggttctgcagaaagaaatgctgccgcacgtcggcgtcagtgacttctgtgaaaccaag
aaggcttatttcttagggtacatggtccacaggctgctgctcgccgctctcggcaggcgg
gaactcgatgacagagatcactacggaaacaagaggctggatctcgctgggccgcttctg
gccttcctgttcagggggatgttcaagaaccttctgaaggaaatcaggatttatgctcag
aagttcattgacagaggaaaagacttcaacctggagctcgccatcaaaacccgcatcatc
tcagacggactcaagtactcgctggccaccgggaactggggcgacgtgaagaaggcccac
caggctcgagccggagtgtctcaggtgttgaaccgtcttaccttcgcctccacgctgtcg
catcttcggcgagtcaactctcccatcggcagagacgggaaactggccaaacctcggcag
ctgcacaacacgctgtgggggatggtgtgtcccgctgagacyccagagggccacgccgtg
ggtctggtgaagaacctggccctgatggcctacatctccgtgggctcgcagccctcgccc
atcctggagtttctggaggagtggagtatggaaaacctggaggaaatctctccagctgcc
atcgctgatgccactaaaatctttgtgaacggctgctgggttggaatccacaaagatccc
gagcagctgatgaacacgctgaggaaactccgcaggcagatggacatcatcgtgtctgag
gtctccatgatcagagacatccgagagcgtgagatcagaatttacacggacgccgggcgg
atctgccgaccgctgctgatcgtcgagaaacagaaactgctgctgaagagacgacacatc
gaccagctgaaggagcgagagtacaacaactacagctggcaggacttggtggcgagyggc
gtggtggagtacatcgacacgctggaggaagaaacggttatgctcgccatgactcctgat
gatctccaggaaaaaggcgtggcctattgctcgacgtacacccactgtgagatccacccg
tccatgatcctgggagtgtgtgcctctatcatcccgttccccgaccacaaccagtctccc
aggaacacgtaccaatcagctatgggcaaacaggccatgggcgtctacatcaccaacttc
cacgtgaggatggacactctggctcacgtcttgtactaccctcagaaaccactggtcacc
acacgatccatggagtacctgcgcttcagagagctgcctgcaggcattaattcaatcgtt
gccatcgcctcgtacacgggatacaaccaggaggactctgtgatcatgaacaggtctgca
gtggaccggggattcttcaggtctgttttttatcgatcttacaaagagcaagagtccaag
aaaggcttcgatcaggaggagatatttgagaagccgacacgtgaaacctgtcagggtatg
agacacgccatctacgataagctggatgacgacgggctcattgcgcccggcgttcgcgtg
tccggtgaggacgtgatcatcggtaaaacggtgacgctgccggagaacgaagacgacctg
gacgtcagcaaccggcgctacaccaagagggactgcagcaccttcctgaggaccagcgag
accggcatcgtggaccaggtcatggtgaccctgaatcaggagggctacaagttctgcaag
atcagggtccgttcggtccggattcctcagatcggagacaaatttgccagtcgtcacggt
cagaaaggaacctgtgggattcagtacagacaggaggacatgccgttcacctgcgaggga
atcacccctgacatcatcatcaaccctcacgccatcccgtccagaatgactgtcggccat
ttgatcgagtgtctgcaaggaaaagtttctgccaacaaaggcgagatyggcgatgccacg
ccgtttaacgacgccgtcaacgtgcagaaagtgtcgaacctgttgtcagagtatggctac
cacctgagaggaaatgaggttctgtacaacgggttcaccgggagaaagctgacgtcgcag
atcttcatcggtccgacctattaccagcgactgaagcacatggtggacgacaagatccac
tcacgagcccgaggcccggtccagatyctcaaccggcagccgatggagggacgatctcgg
gacggtggtctgcgattcggggagatggagcgcgactgtcagatcgctcacggagcggcc
cagttcctcagagagcgtctgttcgaggcgtccgacccgtaccaggtccacgtgtgcaac
ctgtgtggactgatggccatcgccaacacacggacacacacctatgagtgtcgaggctgc
cgcaacaagacgcagatctctctggtgcggatgccgtacgcctgcaagctccttttccag
gagctgatgtcgatgagcatcgctcctcgtatgatgagcacgtag
DBGET
integrated database retrieval system
