Austrofundulus limnaeus (annual killifish): 106534080
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Entry
106534080 CDS
T06063
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106534080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alim03021
]
106534080
03019 Messenger RNA biogenesis [BR:
alim03019
]
106534080
Transcription machinery [BR:
alim03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106534080
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
106534080
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
Pfc11_Clp1_ID
CID
Pcf11_C
zf_PCFS4
Ribosomal_60s
SHOCT
Motif
Other DBs
NCBI-GeneID:
106534080
NCBI-ProteinID:
XP_013886045
UniProt:
A0A2I4D1B8
LinkDB
All DBs
Position
Unknown
AA seq
1617 aa
AA seq
DB search
MKERDGEERPTAAEINPRPACSVTESCPNGSPDELMDCLLIRGSGVHQAAAGVPGSLVSK
MEDAAAKEDACREYQSSLEDLTFNSKPHINMLTILAEENTQFAKDIVAIIEAQISKAPAN
EKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICVFEKVKLCLQLVNPSCPVCCVACPLQ
LLAAGLMLCCDRPPCSSGPTPVLCLQVDENTRKSLFKLRSTWDEVFPLKKLYALDVRVNS
VDPAWPIKPLPPPTSTAIHVNPRFLKQSEEPPSPQAAPVQPPALTPAPQPAPVIPQSSLT
QEQLIRQQLLAKQKQLLELQQKKIELELEQTKAQLMGQAGFGLPPGSSVSAAASSSLSKP
PTQTAPVIRPWIPPLPQSEPKPSTRDPRLNRVGPLTKEPPAAKRDSPVVPPDRKPVEKSS
RQDKGRTPRKEVLDNQSKSPSPLTRSVQSKTKPAEPEAQKPADGTKKDPRLKKRPQDKTT
ESKEDEVKDKKRCGDKKERDESPRGPEPLRTTKIKVHNGSVVKHERDESSEKIDFKTGGN
ARTHARKRSRSPTASPKRKERRSPKSRARSSSPSLSHKPGKPRQHGKPGREDRVAQKKTQ
SEGRRLKRPAEDRRSESRDSHSPRGHDGGGKESKETPQRWRSGWEDSKHLKLLEDARSKP
GPPRHKLYGTPTRPGTPRTLKHRLSVDPNLQIPEVLNSASKKDLLRRASKRLESGEISQE
DFLNMAHQIKHLFQYQEEKQQRSDVWDQAQDFPLSKSSLLSMSPNTQPHPQKPMDAAELS
YYEHKSKLKKTQVSHRVSAEDRQDVSEDSRDLGPGDNSRSAYSRLARDRTGERRSNEGEE
PQPPLAPMIEEYHHGKEFPKLKSLPGLRFRRRADPRESRETSEREWTSPLMERQVYEEEQ
KSSYDAPRRYGPPTEPRRSEGPSPSGAGSRTCPSPGGLEAPPLRFERERLSPLHQKDSAD
LSPVPRFESPNSEHSDDGPLEVPHAPPPKASVKGPPRGGPLSSVRPHGDSPGHTPPHEGG
QPPTRYSGPGPMGPSRPHRPGWYEAGGLGHYEEPQFEGPPHPGPCRFDGGAPHRDGEGPR
MSHGPMKGDGLARFDGPPQGPVRFGAPIGQQTPVRYEGPVGGPGPLEGPVQHFEGPVCFN
NMGPAPMGFQQQQQQQRPLRFEGPGNQMGPMRFDGPARFEGPGQLGPRFDMPSGAPRFDY
PPGQQGPPRFAPQPNMQRPMQPMAPPMYDSPMVPQQNFNMAPQRFPEALNPQFPAGPSMQ
PVGSFNMQPSPFNQPGPGAFYSPAAPAVGLHQPVNLNQAFLPQNPVPFGPQKNHFGQVDV
NDLLSKLISTGIIKPSSQPEATPTSSTESSSAAAPAPPPGEEEEEEEPEVEDEDLPDLTI
FSIDLMKQRYESVVTKLYSGNQCCLCSMRFTTAQTDMYADHLDWHFRQNHAGKVASKKVT
HRRWYYSLTDWIEFEEIADLEERAKSQFFEKENEEEVQKSQAAAKEKEFQSVRATKDQVG
ESCEICQESFETYWVEEEEDWFLKDAIRVDEKNFHPACFEDYKNTSSYLDVTPSPSKLLT
EHPLGAFIKEEEEETSCDVTTVKQEVQSEVPLKEEAQDQEEVQVQEVLDSAQSEDKA
NT seq
4854 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaagggacggagaagagcgaccaacggcggctgaaataaacccgagaccggcg
tgttctgtcaccgagtcgtgtccgaacggttcgccggatgagttgatggactgcctgctg
atccgtggttctggtgtccatcaggccgcagcaggtgttcccgggtcgctggtgtcgaag
atggaggacgcggcggcgaaggaggacgcgtgtagagagtaccagtcgtccctggaagac
ctgacgttcaacagcaagccgcacatcaacatgctcaccatcctggccgaagagaacacc
cagttcgccaaggatatcgtcgcgattattgaagctcaaataagcaaggccccggccaac
gagaagcttcctgttttgtacttagtggactccatagtgaagaacgttggaggagagtac
cttgcagtgtttgctaaaaacctaatcacttcctttatttgtgtctttgaaaaggtaaag
ttgtgtttgcagctcgttaacccttcatgtcctgtttgttgtgtggcttgtcctctgcag
ctgttagctgcagggttaatgttgtgttgtgaccggcccccctgcagctctggacccaca
cctgtgctctgtctgcaggtggacgagaacaccaggaagtccctgttcaagctgcgctcc
acgtgggacgaggtcttccccctgaagaagctgtacgctctggatgtccgggtcaactcc
gtggacccggcctggcccatcaagccgctgccgccgcccacctccaccgccatccatgtc
aaccccaggtttttaaagcagtcagaggagccgccctctccacaggcggccccggtccag
cctcccgcgctgaccccggccccccagccggcccccgtcatcccccagtccagcctgacc
caggagcagctgatccggcagcagctgctggccaaacagaagcagcttctggagctgcag
cagaagaagatcgagctggagctggagcagaccaaagctcagctgatgggacaggctgga
tttggtttacccccggggtcttctgtctctgctgcagcatccagctccctgtccaagccc
cccacccagactgcacctgtcatccgaccctggatcccccccctgccccagtctgagccc
aaaccttccaccagagacccccgtctgaaccgggtcggccccctgacaaaagagcctccg
gctgcaaagagggacagtcctgtggtccctcctgacaggaaacctgtggagaaaagcagc
cggcaggacaaaggcaggacccccaggaaagaggttttagacaaccagtccaagtctccg
tctcctctgaccagaagtgtccaaagtaaaacgaaaccagccgagcctgaagctcagaaa
cctgccgacggcaccaagaaggacccccgcctgaagaaacgtccacaagacaaaaccaca
gagtccaaagaggacgaggtgaaggacaagaagcgctgcggggacaagaaggagcgagac
gagtctccacgaggaccagaacctctgaggaccaccaagatcaaagtgcacaacggttct
gtggtcaaacacgagcgtgacgagtcctccgagaagatcgacttcaagacgggcggcaac
gctcgcacccacgccaggaaacgctcccgctcccccaccgcctcccccaagaggaaggag
cggcgctccccgaagagccgagcccggagcagctccccgtccctgtcccacaaacccggg
aaacccaggcagcacggcaaaccgggccgagaggaccgggtcgctcagaaaaagacccaa
tcagagggccgcaggctcaagaggccggcagaggaccggcgctccgagtcccgggactcc
cactccccccgaggacacgacgggggaggaaaggagtccaaggagacgcctcagcgctgg
aggagcggctgggaggacagcaaacacttgaagctgctggaggacgcccgctccaagcct
ggacctccgagacacaaactgtacggaaccccgactcgtcccggcaccccccgaaccctg
aagcaccgcctcagcgtggaccccaacctgcagatacctgaagtcctaaactccgcctcc
aagaaagacctgctcaggagggccagcaagcgtctggagagcggtgagatctcccaggag
gacttcctgaacatggcccaccagatcaaacacctgttccagtaccaggaggagaagcag
cagcgctccgacgtctgggaccaagcccaggacttccccctcagcaagtcgtctctgctc
agcatgtcccccaacacccagccccaccctcagaaacccatggacgccgcagagctgtcc
tactacgagcacaagtccaagctgaagaagacgcaggtcagccaccgtgtctcagccgag
gacagacaggacgtctcagaggacagcagggacctgggaccaggagacaacagtcgcagt
gcctacagccgcctggcacgggacagaacaggtgagaggaggagcaacgagggggaggag
ccacagcccccgctggccccgatgatcgaggagtaccaccacggcaaagagtttcctaag
ctcaagtctctgcccggactcaggttcaggaggagagccgacccccgagagtccagagag
accagtgagcgggagtggacgtctcctctgatggagcgtcaggtctacgaggaggagcag
aagagcagttacgaygctccgcggagatatggcccccccacggagccccgcaggtctgag
gggccgtccccctcaggtgcagggtccaggacctgtcccagcccaggtggtctagaggcc
cctcctctacgttttgaacgggagcgcctgtctccgctgcatcagaaggactcggcggac
ctgagtcctgtcccacggttcgagagtccaaacagtgaacactcagacgacgggcccctg
gaggtcccccatgctcctccccctaaagcctctgtgaagggtccgcctcgtggggggccc
ctgtcctctgtccgtccacatggagactccccgggacacacgcctcctcacgaaggagga
caacctcccacacgttacagtggacctggacccatgggcccctcgaggccccaccgacct
ggctggtacgaggcggggggtctggggcattatgaggagccacagtttgaggggccgccc
caccccggaccctgcaggtttgatggtggagccccccatcgtgatggggaggggccacgc
atgtctcatggtccaatgaaaggagacggcctggcacgctttgatggaccccctcagggg
cccgtcaggttcggggctcctataggccagcagacccctgtccggtatgagggaccggtg
ggggggccaggccctctagaaggtccggttcagcactttgaaggtccggtctgcttcaac
aacatgggccccgcccccatgggcttccagcagcagcagcagcagcagcggcccctgcgc
ttcgaggggcccgggaaccagatgggtcccatgaggtttgatggtcccgctcgctttgag
ggtcctggacagctggggcccaggtttgacatgcccagtggggcccctcgcttcgattac
cccccgggccagcaggggccccccaggtttgccccccagcccaacatgcagcgtcccatg
cagcccatggccccgcccatgtacgacagtcccatggtcccccaacagaactttaacatg
gccccccagcggttcccagaggccctgaacccccagttccctgcagggccctccatgcag
cctgtagggtccttcaacatgcagccgagccccttcaaccagccgggccccggggccttc
tacagtcctgcagcccccgctgtgggcctgcaccaaccggtgaacctgaaccaggccttc
ctgcctcagaacccggtgccttttggaccacagaagaaccactttggacaggtggacgtc
aacgacctgctgtccaaactcatctccactggaatcatcaagccatcgtctcagccagaa
gccacgcccacatccagcacagagtcatcgtctgctgcagctccggccccgcccccaggt
gaggaggaggaggaggaggagccggaggtagaagatgaagacttaccagacctgaccatc
ttcagcatcgacctgatgaaacagcgttatgagagtgtggtgaccaagctgtactcaggt
aaccagtgctgcctgtgcagcatgcgcttcaccaccgcgcagacagacatgtacgcagac
cacctggactggcacttcaggcagaaccacgctggtaaggtggccagcaagaaggtgacc
caccgccgctggtactacagcctgacggactggatcgagttcgaggagatcgcagacctg
gaggagcgagctaagagtcagttctttgagaaggagaacgaggaggaggtgcagaagagc
caggctgctgcgaaggagaaggagttccagagcgtcagagccaccaaggaccaagtggga
gagtcatgtgaaatctgtcaggaatcctttgagacctactgggtggaggaggaggaggac
tggttcctgaaggacgccatcagggtcgatgaaaagaacttccacccggcctgcttcgag
gattataaaaatacatcttcatatctggacgtcacgccttcgcccagcaagctgctgacc
gaacacccactgggtgccttcatcaaggaggaggaggaggagacttcctgtgatgtcacc
acagtgaaacaggaagtgcagagcgaggtgcctctgaaggaggaggcccaggatcaggag
gaggttcaggttcaggaggttctggactcggcccagtcggaggacaaagcgtga
DBGET
integrated database retrieval system
