Austrofundulus limnaeus (annual killifish): 106534196
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Entry
106534196 CDS
T06063
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K06237
collagen type IV alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04382
Cornified envelope formation
alim04510
Focal adhesion
alim04512
ECM-receptor interaction
alim04518
Integrin signaling
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106534196
04518 Integrin signaling
106534196
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106534196
09142 Cell motility
04820 Cytoskeleton in muscle cells
106534196
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
106534196
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
alim04147
]
106534196
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106534196
Exosome [BR:
alim04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106534196
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106534196
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106534196
NCBI-ProteinID:
XP_013886222
UniProt:
A0A2I4D1W1
LinkDB
All DBs
Position
Unknown
AA seq
1666 aa
AA seq
DB search
MDPRTWRNLVLLLLNLWLLSAADSKQVCHCTGKSLCHCDGVKGQKGEPGSAGYPGMPGVT
GYPGIEGNPGPPGEKGNQERRGPPGVKGSQGLPGTPGFPGTAGVPGIPGQEGPIGRPGIP
GCNGTKGDAGYPGFPGLSGPIGQRGNMGPRGMKGDSLFYPEQQQIKGATGPQGPYGETGL
RGDPGEMGQPGPPGPPGLSGRPGIQGIQGEKGQEGPSPTSPGPQGQKGNRGSPGIPGKKG
IKLYAEGPKELKGEQGDIGQKGCRGASGVSGTPGFKGEKGDRGDYGSLGKPGKKGLEGEI
GEKGDPGDPGNLGPEGIVGTLGEKGRQGPPGPPGEVVPINIFMKGQRGVPGPVGPPGVPG
EQGIIGFPGLKGEQGVAPSGLPGSQGPPGSSGPRGEPGEPGPLITGPPGRTGVPGVGGVE
GEPGEPGIPBFVEGGVGPLGAKGSKGLTGPPGPRGDSGLKGHKGEICRNCRFISGQPGPP
GEPGVPGDHGEPGSCGLRGPVGDNGLKGLVGPPGPLGDTGQPGLKGQPGPAGELGLMRML
GQKGEDGKPGAPGRQGPEGTDGEPGEPGPKGVLGQKGNPGPPGTKGDRGSPGETGPRGPT
GQMGPTGSLGIGVPGPEGLQGDTGFLGEPGEPGKKGEKGAPGEIIGFPGDPGQKGIKGYT
GNQGPEGETGLAGFQGLAGPKGDNGLDGSSIPGFPGSVGLKGNNGPAGEPGFPSFGVKGR
EGPSGPPGTVGLKGNRGVGLTGSQGQPGSQGEDGLVGPPGHPGPPGVQGIGGLKGQVGLP
GLKGHHGLDGGPGPTGLSGVCVSVAPGPQGVQGPKGVIGFIGIRGSKGLKGDPGFPGFGI
QGIQGPKGKQGLDGAPGPMGDQGLKGLRGKDGEPGSPGFRGDVGPPGPPGSLGWNGVKGE
AGQPGPKGQRGQDGARGSQGPPGAQGDRGDPGPQGIQANINAPGGPGNPGDQGAIGCTGL
KGDRGLTGLLGPNGRKGEAGNPGPQGLLGDPGRDGERGLPGFTGPPGDKGLNGCPGYKGE
KGPKGTSGCPGSDGSPGQTGCKGEKGEPSQAGPGAKGPTGEKGRQGCPGSPGPKGQPGNP
GNFGPPGPKGQCGPTGPTGPPGSRGPPGCPGEKGFDGLPGNQGPQGSPGASGPKGPPGNP
GSPGPKGNQGQDGIPGPPGEKGIMGACGVGPKGPDGDRGQPGQAGERGDPGTCGPNGPFG
SAGDLGDSGPPGPPGPPGCTGPKGACISGVKGDRGCPGDKGPKGPPGSKGPPGPPGSGHK
GDKGGKGPPGSSGPMGLSGDTGPQGSPGLCGQPGPSGLKGTRGQFGLRGPIGMKGEPGQP
GLIGPKGTQGQSGRQGESGRDAIADLTLVRGNPGYDGDLGSRGPPGRPGPSGRPGAQGLK
GDXGETGQRGSTGGRGLRGEKGNKGSIGLKGQEGPPGHPGGKGARGQPGEIPVPPKKSGF
LFSRHSQNRTIPRCPNGSSFIYSGYSLLFINGYSRAHGQDLGTLGSCLQRFSTLPFLICE
TTGECKYAERNDYSYWLSNIEPLPENLLSSAEEQLKAKISRCCVCEAKANVIAVHSQSSS
TPSCPTRWKSLWSGFSFVMETGLGAEGSGQPLASPGSCLEKFHKXPFIECNGSPGNCRPD
SSTYSYWLAALQRPNMFRRPRGWFNSGDSQEITDKISRCRVCMKQI
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atggatcccagaacctggaggaacctggttctgctgctgctgaacctctggctcctctct
gctgcagactccaaacaggtgtgccactgcaccgggaagtctctctgtcactgtgatggg
gtcaaaggtcaaaagggagaacctggaagtgctggttaccctggaatgcctggagtgact
ggataccctggaatcgaggggaatccaggaccacctggagaaaagggaaatcaggaaaga
agaggacctccaggagtgaaaggatctcagggacttccaggaacaccaggttttccagga
actgcaggtgtgccgggtatccctggacaggaaggaccgatcggcagaccaggaatccca
ggatgcaacgggacaaaaggtgatgctggttatccaggcttccctgggctttcaggacca
attggccaacgaggcaacatgggsccgcgggggatgaagggagactcgttgttctaccca
gagcagcagcaaattaaaggagcaacaggacctcaaggaccatatggagaaacgggtctg
agaggagatcctggagaaatgggtcaaccaggaccacctggacctcctggactttctgga
agaccaggaattcaagggatccaaggagaaaagggtcaagaaggtcccagtccaaccagc
cctggtccacaaggacagaaggggaatcgtggatccccagggatccctggaaagaaaggc
atcaaactgtatgctgaaggacccaaagaactgaagggagaacagggggatatcggtcag
aaaggttgccgtggagcttctggtgtgtcggggaccccagggtttaaaggagagaagggt
gacagaggagattatggttcactgggtaaaccagggaagaaaggactagagggagagatc
ggagagaagggagaccctggggatcctggaaacctcggccctgaaggtattgttggtact
ttgggagaaaaaggcagacaaggtcctccaggtcctccaggagaggtcgtccccattaac
atatttatgaaaggccagcgaggggtcccaggacctgttggacccccaggtgtccctgga
gagcaaggaatcattggttttccaggactgaagggtgaacaaggtgtggctcccagtggt
ctacccggttcccagggaccacctggttcttctggtcccagaggagagccaggagaacct
ggacccttgattacagggcctccaggacgaactggggttccaggtgttggtggagttgaa
ggagaacccggagaaccaggaataccaractttgtggaaggaggagttggtcctctagga
gctaaaggttcaaaaggtctgacaggacctcctggaccgagaggggacagtggtctgaag
ggtcacaaaggggagatatgtagaaactgcagatttatttctggccaacctggacctcca
ggtgaacccggggttcctggtgaccatggtgaacctggttcatgtggactgagaggacct
gtaggtgataatggtctcaaaggccttgtaggaccacctggcccactgggggacactggt
cagcctggcctgaagggacagccaggacctgcaggggagctaggactcatgaggatgttg
ggacagaagggtgaagacgggaagccaggggctcctggacgtcaaggtcctgaaggaaca
gatggagaaccaggagaaccaggacctaaaggtgttttggggcagaaaggaaacccgggt
cctccagggacaaaaggtgacaggggctcacctggagagactggtcccagaggccccaca
gggcagatggggcccacaggaagccttgggattggggttccagggcctgaaggactccaa
ggagacactggatttctgggtgaaccaggagaacctggaaaaaaaggtgaaaaaggtgct
ccaggagaaattataggttttccaggtgatccaggccagaaaggaataaaaggttacact
ggaaaccaaggacctgaaggagagacgggacttgcaggttttcagggactggcaggacca
aagggagacaacggacttgatggatcatctattccaggtttcccaggcagtgtggggtta
aagggaaacaacgggcctgcaggagaaccagggtttcccagttttggggtcaaaggtcga
gagggcccgtcaggacccccaggcacagttggcctgaaggggaacaggggggtcggttta
acaggcagccagggccagccaggttctcaaggagaagatggtttggttggaccaccagga
catcctggacctccaggagtacaaggaattggtggactgaaaggacaagtgggtcttcca
ggtctcaaaggtcaccatggtctggatggtggccctggtcctactggcctgagtggggtc
tgtgtctctgtagctccgggacctcaaggagttcaaggacccaaaggtgtcatcggattc
ataggaatcaggggatccaaaggtctgaagggagatcctggcttcccagggttcggaatc
caagggattcagggaccaaagggraaacaaggattagatggagctccaggtccgatggga
gaccagggactgaagggcctgagagggaaggatggggagccagggagtccaggatttaga
ggggacgtgggccccccaggaccacctgggagtctaggatggaatggagttaaaggggaa
gctggacagccaggaccaaaaggtcagagrggtcaggatggggccaggggctctcagggg
cccccaggcgctcagggggaccgaggagatcctggaccacaagggatccaggcaaacatt
aatgcaccaggaggacctggaaaccctggagaccaaggggctattggttgcacaggactt
aaaggagacagggggctcacaggactactgggtccaaatggaagaaaaggagaagctgga
aacccaggaccacaaggacttctgggagacccaggtagagatggtgagaggggtcttcct
ggtttcactggaccccctggtgataaaggactcaacgggtgtccaggttataaaggtgag
aaaggtccaaaggggacaagtggatgtcctggttcagatggatcaccaggacaaacagga
tgtaaaggtgaaaaaggagaaccaagtcaagcaggaccaggagctaaaggccccactgga
gaaaagggacgtcaaggatgtccaggaagtccaggtccaaagggacaaccaggaaaccct
ggaaactttggtcctccaggaccaaaaggacaatgtggaccaacaggacccacaggacca
cctgggagcagaggtccacctgggtgtccaggggagaagggttttgatggtcttccaggg
aaccaaggccctcaaggaagtcctggagcttcaggacccaaagggcctcctggaaatcct
ggttctcctggtcctaaagggaaccagggacaggatgggattcctggacctcctggagag
aaaggaatcatgggagcatgtggagtcggacctaaaggaccagatggagacagaggtcag
cctggacaggcaggggagaggggggaccctggcacctgtggccccaatggtccctttggc
tctgctggagacctgggtgactctggtcctcctggaccacctggtcctccagggtgtact
ggaccaaaaggagcctgcatcagtggagtgaaaggagacagaggatgtcctggagacaaa
ggacccaaaggcccgcctggctctaaaggtcctcctggccctccaggttctggtcataaa
ggggataaaggtggtaaaggaccaccaggtagttcaggaccaatgggtctttctggtgac
actggtccacaaggcagtccgggtctctgtggacaaccaggtccttctggactgaaagga
acacgaggacagtttggactcagaggaccaattggtatgaagggggaaccaggacagcct
ggtttaattggtccaaagggaactcaaggacaatctgggagacaaggagagtcagggagg
gacgcaattgctgatttgacgttggtacgtggaaaccctggttacgatggagacctgggg
agcagaggaccccccggccgcccagggccctctggaagacctggagctcagggtctgaag
ggcgacgytggggagacgggtcagagaggaagtactggaggcagagggctgagaggagaa
aaaggaaacaaaggatcaatcggtctaaaaggtcaggaaggaccgccaggtcaccctgga
ggaaaaggtgcccgtggtcaaccgggtgagattcctgtcccaccaaagaaaagtggcttc
ctgttcagcagacacagccagaaccgcaccattccaagatgtccaaatggatcctccttc
atttacagcggctattctctgctcttcatcaacggctacagccgagctcacggacaggac
ctggggacgttgggtagctgtctgcagcgtttcagcaccttgcccttcctgatctgtgag
actaccggagaatgtaaatatgctgaacgcaacgactactcctattggctgtccaacatc
gagccgctgccagaaaacctgctgagcagtgctgaggagcagctgaaggctaaaatcagc
cggtgttgtgtgtgtgaggccaaagccaacgtgattgctgtccacagtcagagcagctcg
acccccagctgccccaccaggtggaaaagtctttggtctggattctccttcgtaatggaa
acgggtttaggagcggaggggtcaggtcagcctttggcctcacctggatcctgtctggaa
aagttccataaaaygcctttcattgagtgcaatggaagtccagggaactgcagacctgac
agtagcacctacagctactggctggctgctctgcaacgtcccaacatgttcaggagacca
agaggctggttcaatagcggggactcacaggaaataactgacaaaatcagccgctgtcga
gtctgcatgaagcagatctga
DBGET
integrated database retrieval system
