Austrofundulus limnaeus (annual killifish): 106534293
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Entry
106534293 CDS
T06063
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3 isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106534293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alim03021
]
106534293
03019 Messenger RNA biogenesis [BR:
alim03019
]
106534293
Transcription machinery [BR:
alim03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
106534293
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
106534293
U7-dependent histone pre-mRNA processing factors
106534293
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
DUF1611
Motif
Other DBs
NCBI-GeneID:
106534293
NCBI-ProteinID:
XP_013886334
UniProt:
A0A2I4D287
LinkDB
All DBs
Position
Unknown
AA seq
690 aa
AA seq
DB search
MATKRKVDVIVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGVKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDIXIIESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAINXNNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLQLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDQVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCVQGQRVSGILVKKNFNYHILNPSDLSTYTELAMSTLKQTQAIPFTGPYSLLVCHLRNL
TGDVEELDGTGKNTLKIFKSITLIHEVGTVVLEWAANPLNDMYADAVTTVVLEVQSNPKA
QKVMETQSAIMDMDVFQTRLEVMLQDMFGVECVDFSDGNIISVTVDGKTVLISLETRSAY
YEDESTEDDSLREMVEXAVQRLYDALNPVI
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggccacaaaacgcaaagtagacgtgattgtccctgctgaggaaagtgaccagctccta
attcgacctcttggtgctggtcaggaggttgggaggtcatgcatcatcttggaattcaaa
ggaagaaagattatgctggactgtggcatccatccaggtttagagggaatggacgccctc
ccttacatagatttgatcgatccagctgagatagacctgctgctcatcagccatttccat
ttggatcactgcggagctctgccctggttcctccaaaaaaccagcttcaaaggccgaacc
ttcatgactcacgccaccaaggccatttaccgctggttactytccgactacgtcaaggtc
agcaacatttctgcagacgacatgctgtacactgagacggacctggaggagagcatggac
aagatcgagaccatcaacttccacgaggttaaggaggtsgctggggtcaaattctggtgc
taccatgctggtcacgtgctcggggcggccatgttcatgatcgaaatagctggygtcaaa
ctgctgtacacgggagacttctccagacaagaggacagacatctaatggcagctgagatc
ccaagtgtcaaacctgacatcrtaatcatagagtcaacgtacggcactcacatccatgaa
aagagggaggagcgcgaggctcgcttctgcaacacggttcatgacatcgtcaacagggag
ggtcgctgtttgattcctgtgttcgcactgggacgagcgcaggaattgttgctcatctta
gatgagtattggcagaatcacccagagctccatgacatcccgatctactacgcttcctcc
ctggcaaagaagtgcatggccgtgtaccagacgtacgtcaacgcgatgaacgacaagatc
cgcaaggccatcaacytcaacaacccgtttgtcttcaagcacatcagcaatctaaagagt
atggaccactttgatgacatcggccccagcgtggtgatggcgtctccgggaatgatgcag
agcggactctcccgggagctgttcgagagctggtgcaccgacaagaggaacggcgtcatc
atcgctgggtactgcgtggagggaacgctggcgaagcacatcatgtctgagccagaggag
atcaccaccatgtcgggacagaaactgcagctgaagatgtcggtggactacatctccttc
tccgcccacaccgactaccagcagaccagcgagttcatcagggctctgaaaccaccacac
gtgatcctggttcacggggagcagaatgagatggcccgtctgaaggctgcgctgatcagg
gagtacgaggacaacgaccaggttcacatcgaagtccacaaccctcgcaacaccgaggcc
gtcactctgaacttcagaggggagaagctggccaaggtgatgggctctctggctgataag
aaatgtgttcagggtcagagggtgtcaggaatattagtgaagaaaaacttcaactaccac
atcctgaatccgtcggatctttcaacgtacacggagcttgccatgagcacactgaaacag
acccaggccatccccttcaccgggccytactcactgctcgtctgccacctgaggaacctc
accggagacgtggaggagctggacgggaccgggaagaatacgctgaagatctttaaaagc
atcactctgatccacgaggtcggcacggtggtgctggagtgggcagccaaccctctcaat
gacatgtacgctgacgccgtcaccactgtggttctggaagtccagtcgaaccctaaagct
caaaaagtgatggagacccagagcgccataatggacatggacgtattccaaactcgatta
gaggtcatgttgcaagacatgttcggagtggaatgcgtggacttcagcgacggtaatatc
atttctgtgacagtagacgggaaaacggttctcatcagcctggaaacycggtcggcgtac
tacgaggacgaaagcacggaggacgactctttgagagagatggtggaastggcagtgcag
cggctctacgacgccctgaacccagttatctga
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