Austrofundulus limnaeus (annual killifish): 106534684
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Entry
106534684 CDS
T06063
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106534684 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
alim03041
]
106534684 (ddx42)
Enzymes [BR:
alim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106534684 (ddx42)
Spliceosome [BR:
alim03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
106534684 (ddx42)
Complex B
106534684 (ddx42)
Complex C
U2 SnRNP specific factors
106534684 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
Adeno_E1B_19K
Motif
Other DBs
NCBI-GeneID:
106534684
NCBI-ProteinID:
XP_013886844
UniProt:
A0A2I4D3Q3
LinkDB
All DBs
Position
Unknown
AA seq
931 aa
AA seq
DB search
MTARVDDANTTWGXDRKRAIFTTLRSSIAMNWNKGGPGVKRGFGFGGFALAGKKEESNLP
QKSHTTFGAPGSSGGYGKGQQLPSFYKIGSKRANFDEENAYFEDDEEESSSNVDLPYIPA
ENSPTRQQMKSGGGSDSEDDPLDAFMAEVEDQAAKDMKILEEKEKKASKGIRDDIEEEDE
QEAYFRYMAENPTAGLTQEEEEENIDYDSDGNPIPSTTKKIIMPLPPIDHSEIEYPPFEK
NFYNEHEELSSLTGVQVLELRQKLNLRVSGAAPPKPCTSFAHFGFDEQLMHQIRKSEYTQ
PTPIQCQGVPIALSGRDMIGIAKTGSGKTAAFIWPMLVHIMDQKELEPGEGPIAVIVCPT
RELCQQIHAECKRFGKAYSLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKA
TSLQRVTYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIERLARDILVD
PIRVVQGDIGEANEDVTQVVELLPSGSEKWSWLTRRLVEFTSSGSVLIFVTKKANSDELA
TNLQQEGYSLGLLHGDMDQSERNKVISDFKKKNLPVLVATDVAARGLDIPSIRTVVNYDV
ARDIDTHTHRIGRTGRAGEKGVAYTLLTSKDTTFAGDLVRNLEGANQAVSRELMDLAMQN
PWFRKSRFKGGKGKKLNIGGGGLGYKERPGLGSDSSERGGSSLLSSSYEGYTKPTTGAMG
DRMSALKQAFQAQYKSHFVAATSGPPKLSTKSNSSSGWTSAGSLSSVPTESANGSERSSI
ASFSVPGFTSAGTLSSVPPSQTGPQQSSPPPAPPAQRDCSRDKHGEGRHGDGHHRHSDRG
DRHGGGDHHRDRDRHGDRDRDRHGDRDRHSGRHSDSRNGEGSRRSSDDRRSDDRRSDRDG
GDKGAGEGRDKGDESFAVPEPPKRRKSRWDN
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgcgtgttgatgacgcaaacactacttgggggtrtgatagaaaacgagcaata
tttactaccctcagaagcagcatagccatgaactggaacaaaggtggtccaggtgtgaag
cgtgggtttggctttggaggttttgcccttgcagggaagaaagaggagtccaaccttccc
cagaaatctcatacaacatttggagctcctggatcaagtgggggatatggaaagggccag
cagcttccatcgttctataagataggatcaaaaagagctaattttgatgaggagaatgcg
tattttgaagatgacgaggaggaatccagcagcaacgtggatctgccttacattccagct
gagaactctccaacacggcagcagatgaagtcaggtggaggctcagatagtgaagatgac
cctttggatgccttcatggcagaggttgaggatcaagcagccaaagacatgaagatacta
gaagagaaggagaaaaaagcatccaagggtattcgtgatgacattgaagaagaagatgaa
caagaagcatatttccggtacatggcagagaatccgacagccgggctgacccaagaggaa
gaggaggaaaacatcgactatgacagtgatggaaatccaattccctctacaaccaagaaa
atcatcatgccacttcctcctattgaccactcagaaatcgagtatccaccgtttgagaaa
aatttttacaacgagcacgaggagctcagcagcctgactggagttcaagtgttggagctg
aggcagaaactgaacttgcgagtatctggtgctgcacctccaaaaccgtgcacaagcttt
gctcacttcggcttcgacgagcagctgatgcatcaaataagaaagtctgagtacactcag
cccacaccaattcagtgtcagggtgtccctattgcactgtctggacgtgacatgattggc
atcgcaaaaaccggcagcggtaaaactgcagccttcatctggccaatgctggttcatatc
atggaccagaaggagctggaacctggagagggacccatcgcagtcattgtgtgtcccacc
agggagctttgtcagcaaatccatgcagagtgtaaacgttttgggaaagcctactcactg
cgttctgtagcagtttatggaggaggcagtatgtgggaacaagccaaggctctacaggag
ggagcagagattgttgtctgcacaccaggtcgtctgattgaccatgttaaaaagaaggcg
acgtccttgcaaagagtgacatacctggtgtttgatgaggctgatcgcatgtttgatatg
ggatttgaatatcaagttagatcgatcgccagccacgttcgccctgacaggcagactctt
ctgttcagcgccacttttcgaaagaagatcgagaggttggcgagggacattttggtagat
cctattcgtgtggtgcaaggtgacattggagaggctaatgaggatgtgactcaggtggtc
gagctgctgcccagcggctcagaaaagtggtcgtggctgacccggcggttggtggagttc
acctcctctggctctgtcctcattttcgtcaccaagaaggcgaacagcgatgagctggcc
actaacctgcagcaggagggctacagcctgggcctcctacatggagacatggaccagagt
gagagaaacaaggtcatcagcgacttcaagaagaagaatctgcccgttctggtcgccacc
gatgtagctgctcgcggtctggacatcccgtccattcgcacagtagtgaactacgacgtg
gcacgggacatcgacacacacactcacaggatcggtcgaacaggtcgtgccggggagaag
ggtgtggcctacaccctcctcaccagcaaagacaccacttttgctggagacctggtgcgc
aacctggagggagccaatcaagctgtttccagagaactcatggatttagccatgcagaat
ccctggttcaggaagtcacgatttaaggggggtaaagggaagaagctgaacattggagga
gggggtctcgggtacaaagagcgaccaggtcttgggtctgacagctctgaacgtggcggc
agcagcttgttgtcgtcgagctatgaaggctacaccaaaccaacaactggagcgatgggg
gatcgcatgtctgctttgaaacaagccttccaggctcagtataaaagccactttgtggct
gccaccagcggccccccgaagctcagcaccaaatctaacagctcctccggctggacgagc
gccggcagcctgagctcggtgccgacagagtccgccaacggctcggagcggtccagcatc
gcctctttttcagtgcctggtttcaccagtgccggcactctgagctcagtgccccccagc
cagaccggcccacagcagagcagcccacctcccgcaccccccgcccagagagactgctcc
cgggacaaacacggggagggacgccacggggacggccaccaccgtcacagcgacaggggc
gatcggcacggcgggggcgatcaccacagggaccgggaccgccacggcgatcgggaccgc
gaccgccacggggaccgggaccgccacagcggccgccacagcgacagccgtaacggcgag
gggagcagacggagcagcgacgaccggaggagcgacgaccggaggagcgacagggacggt
ggagacaaaggggccggagaggggagggacaaaggagacgaaagcttcgcagttccagag
ccaccgaaacgtagaaaaagccgctgggacaactaa
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integrated database retrieval system
