Austrofundulus limnaeus (annual killifish): 106534717
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Entry
106534717 CDS
T06063
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
alim03009
]
106534717 (ighmbp2)
03012 Translation factors [BR:
alim03012
]
106534717 (ighmbp2)
Enzymes [BR:
alim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106534717 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
106534717 (ighmbp2)
Ribosome biogenesis [BR:
alim03009
]
Eukaryotic type
Other ribosome biogenesis factors
106534717 (ighmbp2)
Translation factors [BR:
alim03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
106534717 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
AAA_30
R3H
AAA_19
zf-AN1
Viral_helicase1
DEAD
ResIII
nSTAND3
Helicase_RecD
AAA_16
IstB_IS21
DnaB_C
UvrD-helicase
AAA_22
Flavi_DEAD
SLFN-g3_helicase
PhoH
NPHP3_N
AAA
AAA_25
Zot
SRP54
AAA_31
ATPase
ABC_tran
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
106534717
NCBI-ProteinID:
XP_013886896
UniProt:
A0A2I4D3S4
LinkDB
All DBs
Position
Unknown
AA seq
984 aa
AA seq
DB search
MALEKFVLKTLELLQEEREAEIQETRIWKENISLKDLQNKGVCLLKLQIGSQSTGLYGRT
VVVLEPRKHLGFLSLPSNSFGPGDIVGLYDSSECSATSQICTGIVTRVSQTSVSVAFDDL
KDGIGSDRDALYNLLKLANDVTYKXMKRALNTLNGYSNGPAGNLINVLFGDTQPSSHSQQ
NEVEFFNSGLDDSQREAVTFALSQRELAVIHGPPGTGKTTTVVEIILQAVKQGQKVLCCA
PSNVAVDNLVERLACCKAKVLRLGHPARLLESIQKHSLDAVLAQSDNANIIADIRQDIDK
AFMGMRKMSVKGERVNYKREIGELRKELKTREATAITQILKSADVVLSTNTGACDDGPLK
FLPAEHFDWVVIDECAQALESSCWIALLRARKCVLAGDHKQLPPTIKSQTAASKGLSLSL
MERLIQMYGDSVVRMLTVQYRMNSAIMEWASKNMYSGRLTAHSSVERHLLKDLPGVTCVE
ETCTPLLLIDTAGCGLTEMEVTEEQSKGNQGEVDIVELHIKTLTEAGVKAKDIAVIAPYN
LQVDLLRQKLSSRHPELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVT
RARRHVAVVCDTQTVQNHAFLRSLITHMTEFGEVRTAFEYLPDIVPQNYSRDQKDTKSTS
AATKQKVKDQPSSKVKQKRPAGVSTVEHTAGSQNHTKSCSSSAPKEQQQSSSRYAEIRQQ
VENFLKDLNQNDLQFPSSFNSHDRLLVHQISEELGLVHESRGEGSDRYVTVSRPGTTKPT
EEPTQEETRPEEXQTEETVSGLQSEPSHRPSLDLKSLHLERMKREQQRREETAQQRKQQK
NDPPAPSQPMKKSKGKNKTKAGACDIAAAAAPEDDFDTLISAVMKADSICSFVKCKASVL
TLGQLCIFCNRQYCLSHHIPEVHGCGDKAKSHARQRISKEGVLYAGSGKKDKSLDPSKKA
HLQRKLDSKLKDMATQRKPKNKES
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggcattggaaaaatttgttttaaagactcttgagcttctgcaagaagagcgggaggct
gaaatacaagaaaccaggatatggaaggagaacatttccttgaaggaccttcaaaataaa
ggcgtttgccttttgaagctgcagataggaagtcagtccacaggcctgtatggtcgcaca
gttgttgtcttagaaccaaggaagcatcttggttttttatctcttccgagcaacagcttc
ggaccaggtgatattgttggcttgtatgactcgtctgaatgctctgcgacgtcacagata
tgcacagggatagtaacaagggtcagccaaacatctgtaagtgtggcctttgatgacttg
aaggatggcatcggttctgacagagatgctctttacaacctgttaaagttagccaatgat
gtcacctacaaacraatgaaacgtgctttaaatacattaaatggatacagcaatggacca
gctggaaatttgatcaatgttctctttggagacacacagccttcttctcactcacagcag
aatgaggttgaattctttaactcaggcttggatgattcacaaagggaggctgtcaccttt
gctctgtctcagagggaactggctgtgattcatggacctccaggcactggtaaaacaacc
actgtagttgagatcatcctgcaggcagtaaaacaaggccaaaaggttctctgctgtgcc
ccatcaaatgttgcagtggataatttagtggaaaggttagcctgctgcaaggctaaagtc
ctgagactgggtcaccctgctcgactcctggagtccatccagaaacactctctggatgct
gtgctcgctcagagcgacaatgcaaacatcattgctgacatacgtcaagatatcgacaaa
gcatttatggggatgaggaagatgtcagtcaaaggggaaagagtaaactataaacgtgaa
ataggggagctgagaaaagagctaaaaaccagggaggcaacagccatcacccaaatcctg
aagagtgctgacgttgtgctgtcaaccaacaccggagcctgtgatgacggtcctctgaag
ttcctgccggcggagcattttgattgggtggtgattgatgagtgtgctcaagccctggag
agcagctgctggatcgccttgctccgagcgcgcaagtgcgtcctggctggagaccacaag
cagctaccaccgaccatcaaatcacaaacggctgcatcaaaaggcttatctctgagcctc
atggaacgactgatccagatgtacggagactcggtggtccgtatgctaacagttcagtac
cgcatgaacagtgccatcatggagtgggcttccaaaaacatgtacagtggacgactaact
gctcacagctcagtggagagacatttattgaaagatctacctggagtcacttgtgtggaa
gaaacctgtactcccctccttctgattgatacagcagggtgtggtctgactgaaatggag
gtcacagaggagcagtccaaaggaaaccaaggtgaggttgacattgttgagctgcacata
aaaaccttgactgaagctggagtgaaagctaaagatatcgctgttatcgcaccatataat
ctacaagtggatcttctgcgtcagaaactttcctcacgacatccagagctggagataaag
tcagtggatggatttcagggcagagagaaagaagctgttgtgttgtctttagttcgctcc
aacagaaaaggggaagttggatttctggcagaggacaggaggataaatgttgccgtcact
cgtgcacgacgccacgttgctgtagtgtgcgacacacaaactgttcagaatcatgccttc
ctcagatccctcatcactcacatgactgaattcggtgaagtcaggacggcatttgaatac
cttccagacatcgtgccacaaaattacagcagagaccagaaagacacaaagagcacatct
gctgctacaaaacagaaggtcaaagatcarccttcaagtaaagtgaaacagaaaaggcct
gcaggtgtcagcacggtggaacacactgcgggttcacagaatcacacgaagtcctgctca
tcatcagcaccgaaagaacaacagcagagcagcagcaggtacgctgaaatcagacagcag
gtggagaactttctaaaggacttgaaccagaacgatttacagtttccgtcatcattcaac
tcccacgaccggctgctggtccatcagatctctgaggagctgggtcttgttcatgagagc
agaggtgagggcagcgacaggtatgtcactgtctccaggccagggaccacaaaaccaact
gaggagccaacacaagaagaaacccgaccagaagaaayccaaacagaagaaacggtctcc
ggtctgcagagtgaaccatcacatcggccttcattagacctgaaaagtttacacctggaa
agaatgaagcgagagcagcagagaagagaagaaacggctcaacaaagaaagcaacagaaa
aatgatcccccagctccgagccagccgatgaagaagagtaaaggaaagaacaaaacgaag
gccggcgcctgtgacatcgctgccgccgccgctccggaggacgacttcgacactctcatc
agtgctgtcatgaaggccgacagcatttgtagttttgtcaagtgtaaagcgtccgtgtta
acactcggacagctttgcattttctgcaacaggcagtattgtctcagtcatcatatacca
gaggttcatggctgtggagataaggccaagtcccatgctcggcagagaataagcaaagaa
ggtgttctttacgctgggagtggaaagaaagacaaatcgttggaccccagtaagaaagca
catctgcaaagaaaactggactctaaactgaaagatatggcaacacaaagaaaaccaaag
aacaaagagagttaa
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