Austrofundulus limnaeus (annual killifish): 106535056
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Entry
106535056 CDS
T06063
Name
(RefSeq) collagen alpha-1(XXV) chain-like
KO
K24356
collagen type XXV alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106535056
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106535056
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
106535056
NCBI-ProteinID:
XP_013887386
UniProt:
A0A2I4D560
LinkDB
All DBs
Position
Unknown
AA seq
517 aa
AA seq
DB search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NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcccaaagatcaatcatggctttctttccgctgaccagcagctcataaagcgg
cggctcattaagggagatcagggccaagcgggaccgcccgggcctccagggccacctggt
cctcctggaccgagaggccctccgggggacacgggaaaagatggacccagaggtctgcca
ggtctacctggtgatccaggacagtcaggagaagcaggacctatggggcctgaggggcca
caggggccaatgggatcactcggacctcctggtgtcgacgggctgaagggtgaaaaggga
gacatgggtgaaaagggcgatatgggtgaggacggaccgaaaggtgacatgggggagaag
ggagatgctggctcctctgcggcaggcatcaagggtgaacctggagaacctggtcgaagc
ggactgaagggagaaccaggactaccagggctgcctggactcccaggaataaagggcgag
cctggatttttgggcccccagggagaaccggggcttccaggactgccaggcaccaagggg
gagagaggtgaccacggaccacctgggaagggcgagcgaggagacatcggacctgttggg
ccaaagggttcacaaggagaggctggtgtgcccggttccaaagggtcaaagggggagact
ggagataaaggagacttgggatctgttggtccaaagggtcctcctggacagaaaggagac
cgaggggcgactgaaatcatcgactacaatggaaacatcgaagaggccttgcagaagatc
actacgatcacagtaacgggtcctcctggtccacctggaccaatgggaccacagggaata
aagggggatcgtggtttgcccggtcttcctggacttgatggtgaaagaggctataaaggt
tctaagggagacatggggatgcctggggcctccggagagaaaggaaccactggattacct
ggtttacctggtgtcaatggggcaaaaggagataaaggagatgcaggaatgcctggtcca
caaggtccatctattgttggacctcctgggccaccaggacctcatgggcccccaggacct
atgggacctcatggatttcctggtgcaaagggagaaccaggtctgcatggtctgaaggga
atgagaggagaaccaggacacaaaggagatcgtggaccgttgggcctccctggagcctcc
ggcttggacggcaagcccggaattaggggcatggacgggccgccgggtccagctggtcca
gctggaccaaagggtgacataggggaaaaaggaggaccgggtgaaccaggaccgcgaggt
ccttatggattaccgggtgcagctggagcagctggaacaccaggactggacgggttgcca
ggcttaaagggagataaaggcaacgatggggaaagaggagaaaagggggagaagggaaag
aagggcaaaaaagggcctaagggcgagaaaggagaacagggtgctcctggattagatgcg
ccctgcccattgggcccagatggattaccgatgcctggttgttggcagaagtga
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