Austrofundulus limnaeus (annual killifish): 106535449
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Entry
106535449 CDS
T06063
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03030
DNA replication
alim03410
Base excision repair
alim03420
Nucleotide excision repair
alim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
106535449 (rfc1)
03410 Base excision repair
106535449 (rfc1)
03420 Nucleotide excision repair
106535449 (rfc1)
03430 Mismatch repair
106535449 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alim03032
]
106535449 (rfc1)
03400 DNA repair and recombination proteins [BR:
alim03400
]
106535449 (rfc1)
DNA replication proteins [BR:
alim03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
106535449 (rfc1)
DNA repair and recombination proteins [BR:
alim03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
106535449 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
AAA_22
PTCB-BRCT
AAA_30
AAA_17
AAA_33
Rad17
AAA_5
RuvB_N
AAA_7
AAA_14
RNA_helicase
AAA_18
BRCT_2
AAA_16
nSTAND3
NTPase_1
AAA_19
Motif
Other DBs
NCBI-GeneID:
106535449
NCBI-ProteinID:
XP_013887905
UniProt:
A0A2I4D6N5
LinkDB
All DBs
Position
Unknown
AA seq
1170 aa
AA seq
DB search
MDIRRFFGPVSGKPAVQKPAPSENIKPKKKKKNSLSSDDDLKKKKSTKVKSSKTEEPQKG
SEKKRKKRAVIESDSDEEEEPVLKSKKSSKKKGAASKAEPPSKKDPVQYVSETDSDSDNF
LSLKKVSKTKPNGTAKATKPDPESSPSGSRDQVKSPIRPSSSQARAGLKSPPVPTTPRSA
PPPPPPKQTPTSVFDYFGMGTIRRSDKKLVASAKRKAPTPDSDDLISDEEMARQLQMEEE
LELEKQVHQDEEFARTLSMLDSEPQTKKARKSSEEKPGPSTTPKKSSTAPAAVGGTGSPS
KTRGSWSEVRRSPRTTPVKTSSKLAMMMKNDEAKEQGAKKKTPTKNKISPKKEPLTSPVS
DMKFTPKTGTPRTEPKTSPRKPEVTSISPEDAEKKKLHSSAYRNYLNREGPRALGSKEIP
EGAENCLEGCVFVLTGVLESMERDDAKTLIERYGGKVTGNISKKTSYLVQGRDSGVSKLE
KAESLGTKILDEDGLLDLIRTKPGKKSKYEIAAEAENHASKTRTPPSHTSKSTPKAQKIS
PSKGNSRSPHTPSPSKTGQARGHGSRTGDGGTPPGRGSGHTARRELGLPSSSAPGSSSPS
PTGESLLWVDKYRPQSLKAVIGQQGEQSCANKLLRWLQNWNKHHGSGSKPAAARFGKFGG
GKDDGSGFKAALLSGPPGVGKTTTAALVCEELGFSYVEMNASCTRSKNSLKEVVAESLNN
TSIENFYKGTSQTVSSKHVMIMDEVDGMAGNEDRGGMQELISLIKTTKIPIICMCNDRNH
PKIRSLANYCFDLRFQRPRVEQIKGAMMSIAYKEGIKIPPPALNEIILASNQDVRQVIHN
LSMWSARDKVMTYDQCKSDAASARKDMKLGPFDVCRKVFASGEDSTRMSLIDKSDLFFHD
YSLAPLFVQENYVHVRPAAARGDLKAHLVLLSKTADSICDGDLVDRQIRSRQNWSLLPTQ
AIYASVIPGELMRGYMAQFPVFPSWLGKNSSTNKHARIIQELACHMSLKTMGSRQAVNLD
YLHYLRLMLLQPLQKHGAEGATQAVQLLDHYQLMREDVDSIMETSVWGGQPDPYSKLDSK
VKAAFTRAYNKEVHLTPYSLQAVKKARRGGGSELGGEDMDPDGNGSEDEGEELQTDAMIK
QKKTKTTKESKKKKEDSGKGKGKGKGKAKK
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggatatcaggcggttctttggaccggtgtcagggaaacctgctgtgcagaaaccagcc
ccaagtgaaaacatcaaaccaaagaagaagaagaaaaattcactgtcttcagatgatgat
ctgaaaaagaaaaagagcaccaaggttaaaagctccaaaacagaagaaccacaaaagggg
agtgagaaaaaacgaaagaagcgtgcagtcatagaatcagactcagatgaggaggaggag
ccagtgctgaagtcaaagaaatcctccaaaaagaaaggagcggccagcaaagcagaacct
ccctctaaaaaggatcctgttcagtatgtttctgaaacagactcagacagcgacaacttt
ctgtccttgaagaaagtttccaaaaccaaaccgaacggcacggccaaagccacgaagcca
gatccagaaagttctccctcgggaagcagggatcaggtgaaatctcccatcaggccctcc
tctagtcaggccagagctgggctgaagagtcctcctgtgcccacgacccccaggtcagcg
ccgcctcctcctccgcccaaacaaacacccacctccgtgttcgactacttcggcatgggg
acgatccgccgctcggacaagaagctggtagccagcgccaaacgaaaggcgccgactcca
gactcggacgacctgataagtgacgaggaaatggctcggcagctgcagatggaagaggag
ttggagctggaaaaacaggtccatcaggacgaggagtttgccagaactctgtccatgctg
gactccgagccgcaaaccaagaaggctcgcaaaagctctgaagagaagccgggtccgagc
acaacccccaaaaagagcagcacggctcccgcagccgtcggtggcacaggcagcccctcg
aagaccagaggaagctggtcagaggtcaggaggagtccgaggacgactcccgtcaaaacc
agctccaaactggcgatgatgatgaagaacgacgaggcgaaggagcaaggagcaaagaaa
aaaacgcccactaaaaataaaatttctcccaaaaaagagcctcttacttcaccggtctca
gacatgaagttcacacccaaaacaggaacgccacgaacagaaccgaaaacctctcccagg
aaacctgaggtcacaagcatcagtcctgaggacgcagagaagaagaagctgcactcctca
gcttacagaaactacctgaacagagaaggaccacgagctctgggatccaaggaaatcccg
gagggagcagagaactgtttggagggttgtgtgttcgtgctgacgggagtcctcgagtcc
atggagagagatgacgccaaaactctgattgagcgctacgggggcaaagtgacgggcaac
atcagcaagaagacctcctacctggtccagggcagagacagcggagtgtcaaagctggag
aaggcggagagtttaggcaccaaaatcctggatgaagatggtctgttggacctgatccga
accaaaccaggaaagaagtcaaagtatgagattgctgcagaggcagagaaccatgcttct
aagaccaggactccccccagccacacctcaaagagcacccccaaagctcagaagatctcc
ccctccaagggaaactccaggtctccccacaccccgagtccatccaagaccggacaggcg
cggggtcacggttccaggaccggggacggcggcacgccacccgggaggggctcaggtcac
acggctcggagggagctgggcctgccttcctcctcagccccaggatcctcctccccctca
ccgacgggggagagtctcctttgggtggacaagtaccgtcctcagtctctgaaggctgtg
attggccagcagggggagcagagctgtgccaacaagctgctccgctggctgcagaactgg
aacaaacatcacggcagcggcagcaagccggcagcagccaggttcggtaaattcggagga
ggtaaagacgacggatcagggttcaaagctgctctgctttctggacctccaggagtgggg
aagaccaccacagctgcactggtctgtgaggagttgggcttcagctacgtggagatgaac
gccagctgcacccgcagcaaaaacagtctgaaggaggtggtcgcagagtcgctgaacaac
accagtattgaaaatttctacaaaggtacatcgcagacagtgagcagtaaacacgtcatg
atcatggatgaggttgatggtatggccggtaatgaggatcgtggaggaatgcaggagctg
ataagtctgataaaaaccacaaagattcccatcatctgcatgtgtaacgaccgcaaccat
ccgaagatccgatcgttggctaactactgcttcgacctgcggttccagagaccgcgagtg
gagcagatcaagggagccatgatgtccattgcttacaaggaaggcattaagatcccgcct
ccagccctcaatgaaataatcttagcctccaatcaggatgtcagacaggtgatccacaac
ctgagcatgtggtcggccagagacaaggtgatgacgtacgaccagtgcaagtcggacgca
gccagcgcccgtaaggacatgaagctgggcccgttcgacgtctgcaggaaggtgttcgcc
tctggggaggacagcacccgcatgagcctcatcgacaagtcggacctgttcttccacgac
tactcgctggcgccgctgttcgtccaggagaactacgtgcacgtccgtccagccgccgcc
cgcggagacttgaaggcacacttggtgctgctcagtaagacggccgactccatctgtgac
ggtgacctggtggacagacagatccgctcgagacaaaactggtcgctgctgcccactcag
gccatctatgctagcgtaatcccaggggagctcatgaggggctacatggctcagttccca
gtcttcccaagctggctcggcaagaactcctcaactaataaacacgcccgcatcatccag
gagctggcctgtcacatgagcttaaagacgatgggcagcaggcaggcggtgaacctggac
tacctgcactacctgcggctgatgctgctgcagccgctgcagaagcacggagcggagggc
gccacgcaggccgtgcagctgctggaccactaccagctgatgagggaggacgtggacagc
atcatggagaccagcgtgtggggtggacagcctgatccttactccaaactggactccaag
gtgaaggcggcgttcacacgggcgtacaacaaagaggttcacctgacgccgtactccctg
caagccgtgaagaaggctcgccgtggcggaggctcggagttaggaggggaggacatggac
ccggatgggaatgggtccgaggacgaaggggaggagctccaaactgacgctatgatcaaa
cagaagaagactaaaactacgaaagagtcaaaaaagaagaaggaagactctgggaaaggt
aaaggaaaggggaaaggcaaggctaaaaagtga
DBGET
integrated database retrieval system
