Austrofundulus limnaeus (annual killifish): 106535543
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Entry
106535543 CDS
T06063
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106535543 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alim03021
]
106535543 (smarcc2)
03036 Chromosome and associated proteins [BR:
alim03036
]
106535543 (smarcc2)
Transcription machinery [BR:
alim03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
106535543 (smarcc2)
Chromosome and associated proteins [BR:
alim03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
106535543 (smarcc2)
PBAF complex
106535543 (smarcc2)
GBAF(ncBAF) complex
106535543 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
106535543
NCBI-ProteinID:
XP_013888034
UniProt:
A0A2I4D730
LinkDB
All DBs
Position
Unknown
AA seq
1051 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKCFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSDIEPKLLGKLKDIIKRHQGSVTEDKVSSSHVVVP
IPTSLEEEEWVRPVMKRDKQVLLHWGYFPDSYDTWIPASEIEAAVEDAPSPEKPRKVHAK
WILDLDQYNEWMNEEDYEVGEGCPKRKRISAKTLTDEVTTPEERRDKKPGSAKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYTKSKRGQREEEQEDLSKDLDEASPVPTSEEGNTAKTN
NTKKDSDSTPVKGGTEMDEQEDESMETTGKQDEEEGSPSVKGEPVKGSDLHEDNVTEQTH
HIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLT
STACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLV
PLQPKTSQTPATQPMMSFPDKVKEKPADLQNFGLRTDMYSKKSGSTKSKNGASSMRDWTE
QETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSSTMGPLAYQP
IPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAA
RVSGRQDPLYGLEGSGIAGTGLEEGERPDESSDESKSDSQSNEEKRDTKDSKDGAIEEEE
KQVENGKKEEDRGREPEGEREAEKTEADMGDGEKEKDAKEGTEEGQREGEIEGERKAKVE
RDVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELE
TIMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQQHSQAGGPHSNQA
TPGPPPQGPTAGQPAPSTPASQAAPSPAPPSSSAPAPESQPPPGAHTSPPCPPGQAPAPH
SSSSSTPVLHESNAPLPGETLHPSAPVPPPQ
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaatgtaaaatatttcgaagcgtctgacacc
gtttcgcagtttgataatgtccgcgtctggctgggaaagaattacaaaaagtacatccag
gctgagccccccaccaacaaatccctttccagcctggtggtccagctgctgcagttccag
gaggaggtgttcggcaggcacgtcagcaaccctcccctcacaaagctgccgatgaagtgt
tttctagacttcaagtcaggaggggctctctgccacattctggctgctgcctacaagttc
aaaagtgatcaaggatggcgcaggtttgacttccagaatccatcaaggatggaccgaaat
gtggaaatgttcatgacaattgagaagtccttagtgcagaacaactgcctgagtagacct
gtcatctacctgagttctgacattgaaccaaagctgcttggaaaactgaaagacatcatc
aaaaggcatcagggctcagtgactgaggacaaggtctccagctctcatgttgtggtgccc
attccaaccagtctggaggaagaggagtgggtgcgccctgtgatgaagagagacaagcaa
gttctgctccactggggatattttccagacagttatgacacctggatccctgccagtgag
attgaggcagcagtggaggatgctcccagcccagaaaagcccagaaaagtccacgcaaag
tggattttagacctggaccagtataacgagtggatgaatgaggaggactatgaggtggga
gagggctgtcctaagaggaagaggatttccgccaagacactcacagacgaggtgaccaca
ccagargagcggagggacaagaaacccggcagtgccaagaagaggaagcgctcgccgtcg
ccctcccccacgcctccgcctcaggagagcaagaagaagaacaccaaaaaagggccaaca
acaccatacactaaatctaaacggggtcaaagggaggaggagcaggaggatctgtccaaa
gatctggatgaagcttcaccggttccaacatctgaagagggaaacacagcgaagacaaat
aacactaagaaagattcagattcaactccggtcaaaggaggaacagaaatggatgagcag
gaggacgagtctatggaaacaacaggaaagcaggacgaggaggaaggctctcccagtgtg
aagggtgaacctgtgaagggctccgaccttcatgaggacaacgtgactgagcaaacccac
cacatcatcataccaagctacgctgcctggttcgactacaacagtgttcatgccatcgag
cgtagagccctgccagaattttttaatgggaagaacaaatccaaaaccccagagatttat
ctggcatacagaaacttcatgattgacacctaccgactgaaccctcaggagtacctgacc
tccactgcgtgccgcaggaacctggcgggagacgtgtgcgccatcatgagagtgcacgct
tttctggagcaatggggactgatcaactaccaggtggactctgagagtcgacccactccc
atgggaccgccacccacctctcacttccatgtcctcgcagacactccctcaagtctggtg
cccctgcagcccaaaacatcacagactcctgccacccagccgatgatgtcattccctgat
aaggtcaaggaaaaaccagcagatctgcaaaactttgggctccgaaccgacatgtacagc
aagaaatctggatcaacaaagagcaagaatggagcaagctcaatgagggactggacagag
caagaaacactactactacttgagggtctggagatgtacaaagacgactggaacaaggtg
tctgagcacgtcggcagccgcacgcaagatgagtgcatcctgcacttcctgcggctgccc
atcgaagacccgtatttggaggacagctcctcaactatgggcccgctggcttaccagccg
atacctttcagccaagcaggaaaccctgtcatgagcacggtggccttccttgcttctgta
gttgacccacgtgtggcctcagctgcagccaaatctgcactcgaggaattctcgcgaatg
aaggaggaggttcctgcagcacttgttgaggctcacgtacggcgggtggaggaagcagcg
agggtcagcggccgacaggatcctctgtacggcctggagggaagtggcatcgcaggcact
ggcctggaggagggagaaaggcctgatgaaagcagtgatgaaagtaagagtgacagccaa
tcaaatgaagagaagagagacactaaggatagtaaagatggagcgatagaggaggaggag
aagcaggtggaaaacgggaaaaaggaagaagacagaggaagagaacctgaaggagagagg
gaggcagaaaaaacggaggctgacatgggcgatggagaaaaggagaaagatgcaaaagag
ggaacagaagaaggacaaagagaaggagagattgaaggagagaggaaggcgaaggttgag
cgtgacgtgggagaggggaacctggcaactgctgccgcctccgctttagccgccgctgct
gtcaaagccaagcatttggccgcggtggaggagagaaagatcaaatctctggtggctctg
ctggtggagacgcaaatgaagaagcttgagattaaactgcgacactttgaagaactggaa
acgatcatggacagagagagggaggccctcgaatatcagcgtcagcagctgctggctgac
cgtcagtctttccacatggagcagctgaaatacgctgaaatgagggctcggcagcagcac
ttccagcagattcagcaccagcagcacagccaggcagggggtcctcactccaaccaggcc
accccaggcccaccaccccaaggcccgactgcaggtcagccagctcccagcacaccagcg
tcacaggcggcacccagccccgcgcctccgtcctcttctgccccagcacctgagtcccag
ccacctccaggagctcacacctcacctccatgccccccaggccaagccccggcccctcac
tccagctccagctctacacctgttctccacgagtccaacgctcctctgccaggggagacg
ctccacccgtcagctcccgtccccccaccacagtga
DBGET
integrated database retrieval system
