Austrofundulus limnaeus (annual killifish): 106535900
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Entry
106535900 CDS
T06063
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein-like isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
alim
Austrofundulus limnaeus (annual killifish)
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alim03019
]
106535900
03036 Chromosome and associated proteins [BR:
alim03036
]
106535900
Messenger RNA biogenesis [BR:
alim03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106535900
Chromosome and associated proteins [BR:
alim03036
]
Eukaryotic type
Gene silencing
piRNA pathway
106535900
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
UBA_NBR1_C
THOC7
Motif
Other DBs
NCBI-GeneID:
106535900
NCBI-ProteinID:
XP_013888498
UniProt:
A0A2I4D8C5
LinkDB
All DBs
Position
Unknown
AA seq
1894 aa
AA seq
DB search
MPEPLTQRQEENHLMEDKKKKKQEEKKKKDAAQKKVTEQTTKVPDSVKLDPTPPPAPTSP
GATPSAAPCSGNGKRAPSGCQPQTLLQQRYPPREVPPRFRQQEQKQLLKRGQPLPSGTPP
PLLATGHPNTSESAAATVATNSSPSRSSSSSSSASLPTGQPRHSVELPPQSGQEAQYDNP
SWGHLPANRSATSAASSTNLSGWDKLIIDQKDTEAWPSITLSQSQAPPKGCPLDTDPGHL
TSSSSSTSSSCSTVSMATGANGQTGHFPANHLSSKANSGPSPANHTGTSMLSSQVTTNRG
WGSGPGPSHCPSQSSVGNEXKCDSPVGGGSRGWGSSSSSSASNFNLNLNPSANPSAWPML
GHDGGGSSGGANTISSPQTTTNLCNPPGLPPTQTSTCSGANTNSKSSGIGSAWGNIMASD
VSESHPTPSTNVSFSSEPQNLKTDGPNQTQKQEPPSPIRKLPGWGSAPAGMSPIGQPPPG
GSQVNGEDDNSLWGNSGNSKPTSSKEGPGWDTAWGHGGGGPGNSGGWGEQSSGDWGKQHS
EETQGSWDAPSSPPQDSQGNHWSRAVSTTGASEGSSDSIDGYSRRRDHPSRDKPVPVLPA
QELDPRVLCNTGWGQTPVRQHTTWDMDDTKRKNDVGTESWGSGPSTSSEAQGPSNTNTGP
SQRTDSGNKNDVPGSQGASGWGGSVAATHLPGSGWGDISNNVKHPVGHGSWVNSSSGGTT
NNIPKNGGQSWGEEKSAGWEDSQSKSTPQGWGEQPKTSHSWGNSGASNTGDWNEPEESKK
TSTNPDWEGESGNWKENQRDWGRSTSGPGMSGAGGSGGWGESTPQRPCGPPQGWMGKPQD
GPSSNSSGGAAMGSWGGSNSVKQGAGWGGGKPESSNEPTGWEEPSPPSIRRKMEIDDGTS
AWGDPGTYNKAVNLWDRNNSGKTQAKVTTGGSNPSASNNNHPHSHNHSYHGPPAPLQNHS
QNTQNPCPTSGPMDPSVQHQSGQTHIRGPLMAQGWGDLPSSHTKSENSWGEPAPSPVSVD
NGTSAWGKPSGSSGGWGDGNPDNYRRSNPTMTTASCKPAAKPMQDGWGGGGGGGGEELSL
SGGQWDAEEGDVWNSTASQESNASCNSWGNASKKAPQKVKVPGKQEDAWIMKHLIKQLTD
MGFPRDPAEEALKSNNMNLDQAMSALLEKKTELDKRGMGIGGHDFNNGLINKPMSCPRPP
LLSKDPSADPRLPFIDKQMQSGMFGGSGAAQARAMQQPQPQPPPQPPVLPLSSSHPSLRA
QVPQFLSPQVQAQLLQFAAKNIGLNPALLTSPINPQHMTLLNQLYQLQLTYQRLQIQQQM
LQAQRNVSGPIRQQEQQVARTINNMQQQIQQHQRQLAQALLMKQQQQQQTPSHSGLHPGG
AKSTLETFPGHPQTPGLPDLQTKEPQSSPNTYNPYALSGLNPNMNPNCMDVGSLPLKDPP
QPQSRLSQWTHPNSIESLSGNSSPLEPNLGKHGANLGPPGKPPQMDDSYNPYNLMSSSES
PTSPLVPPESWGPSKNSSDKMTNGTNINWPPEFCPGVPWKGLQNIDPETDPNVTPGSVPS
GPTINTNIQDVNRYLLRDRSGGSSPTSCQSEALPPSTDWPVSAYTSSFSLSSPEMDDAGK
LSEMKSTWSPGPIAQSQPSLSHELWKVPQGPRSSTTAPSRPPPGLTNTKPSSTWGGNSLG
LAQGWSSSYATAGTTWSTDSSNRTSSWLVLRNLTPQIDGSTLRTLCMQHGPLITFHLNLT
QGNAVVRYSSKDEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFFAQSQSLGGTTSWQAT
PGTNQTRMGGAGSGAAHPIGHSPHWNNNNNGGVSGGSSGLGAAGTKSGGELLWGGVQQYS
SLWGPPSGEEGRVMGSPTPINTLLPGDLLSGESM
NT seq
5685 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagcctctgacacaaagacaagaagaaaaccatttgatggaagataagaaaaag
aaaaaacaagaagaaaagaaaaagaaagacgctgcacagaaaaaggtcacagaacagaca
accaaagtgccagactctgtcaagctcgaccccactcctccacctgcccccaccagcccc
ggtgccaccccatccgcagccccgtgcagtggaaatggcaagcgcgccccctctggatgc
cagccgcagactttgctccagcagcgctacccaccccgagaggtacctccacgcttccgc
cagcaggagcagaagcagctgttaaagaggggccagcctctgccctccgggaccccgccg
cctctcctcgccacgggacatcccaacactagtgaatctgcagcagcaacagtagccaca
aactcatctccatcccgctcctcctcctcctcctcctcagccagcttgcccacaggtcag
cctagacactcagttgaactgcccccacagagtggccaagaagcccagtatgataacccc
tcttggggacatctgccagccaatagaagtgccacaagtgctgcatcttccaccaatctc
agtggctgggataaactgatcattgaccagaaggacacagaggcttggccctctataacc
ctcagccaaagccaggcccctccaaaaggatgccctttggacactgaccctggtcacctg
accagcagcagcagtagtacaagcagtagttgtagtacagtgagtatggccacgggggcc
aacggtcagacaggccactttcctgccaaccaccttagcagcaaagccaacagtgggcct
agccctgccaatcatactggaaccagcatgctttctagccaggttacaaccaatcgtggt
tggggctctggacctggaccttctcattgcccctcccaatcctcagtggggaatgaagmg
aagtgtgacagcccagtgggaggaggaagcagaggctggggttcctcttcatcatcctcc
gctagcaactttaacttgaaccttaaccccagtgctaacccatctgcctggcccatgttg
ggacacgatgggggaggcagctcagggggagccaacaccatttcatctcctcaaactaca
accaacctctgtaatcctcctggcctcccaccaactcagaccagcacctgttctggagcc
aacactaacagcaagtcctctggtattggcagcgcatggggtaacataatggcttctgat
gtgtcagagtcacaccccaccccatccacgaatgtgtctttcagttcagaacctcagaac
cttaaaactgatggaccaaatcagactcaaaagcaggagcctcccagcccaatccgaaaa
ttgcctggatggggcagtgcacctgcaggcatgagtcctataggacagccaccgccagga
ggttcacaggtcaatggagaagatgataactctttatggggtaacagtggcaactcaaaa
ccaacttcatcaaaggagggacctggctgggatacagcctggggccatggaggaggtgga
ccagggaactcaggaggctggggtgaacagtctagtggagactgggggaagcagcatagt
gaagagacccagggaagctgggatgcacccagctctcctccccaggattcacaaggtaat
cattggagcagagctgtgagcacaactggtgccagtgaaggtagcagtgacagcatagat
ggatattccagacgaagagaccacccatcragagataaaccagttcctgttctccctgcc
caggagctagaccctagggttctgtgtaacactggttggggacagactcctgtgcgccag
cacaccacctgggacatggatgatactaaaagaaagaatgatgttgggactgaatcctgg
ggatctggtccatctacttcaagtgaagcgcagggaccctcaaacaccaacacaggccct
tctcagaggactgacagtgggaataaaaatgatgtgcctggttctcagggagcttctggt
tggggtggaagcgtagctgctacacacctgccgggctctggttggggagatatatccaac
aatgttaagcacccggttggacatggaagttgggtgaactcttcatcaggaggcactacc
aacaatatacccaagaatggtggtcagtcctggggagaggaaaaatcagcagggtgggag
gattctcaaagcaagtcaacaccccagggctggggagaacaacccaaaacatcccactcc
tggggcaatagtggtgcaagcaatacaggggattggaatgaaccagaagagagcaagaag
acttccacaaaccccgattgggaaggagaatctggaaactggaaggaaaatcaaagagac
tgggggaggtcgacttcaggaccggggatgtctggagctggaggaagtgggggctggggt
gagtcaacgccccagcgtccctgtggtcctcctcagggctggatgggcaagcctcaagat
gggcccagcagtaacagcagtggcggagcggccatgggctcttggggtggctcaaactca
gtgaagcagggtgcaggatggggtggtggtaaaccagagtcctcaaatgagcctactggc
tgggaggagccatctccaccatcaatccggcgtaaaatggagatagatgatgggacgtct
gcttggggtgacccaggtacctacaataaggccgtcaatttatgggataggaacaattca
ggaaagacccaggctaaagttaccacaggaggaagtaatccctcagcatccaacaataac
caccckcactctcacaatcattcttatcatgggccgcctgcacctttacagaatcatagc
caaaacactcaaaacccatgtcccaccagtgggcctatggatccttcagtgcaacaccag
tctgggcaaacgcacatcagaggtccactgatggctcaaggttggggagatctaccgagc
tcccacaccaaatcagaaaactcctggggggaacctgcaccctctccggtcagcgtagat
aatggcacgtctgcctggggcaaaccgagtggaagctctggtggctggggagacggcaac
ccagacaactatcgcaggagcaacccaacaatgaccactgcttcctgcaaacctgccgcc
aaacctatgcaagatggatggggaggaggagggggagggggaggtgaagagctcagcctg
tcagggggtcagtgggatgctgaggagggagacgtgtggaacagcaccgcctcccaggag
agcaacgcttcatgtaactcctggggcaacgcatccaaaaaagcccctcagaaggtgaaa
gtccccgggaagcaggaagatgcctggatcatgaaacatctcatcaaacagctgacagac
atgggcttccctagggatccagcagaggaggctttgaaaagcaacaacatgaacttggat
caggccatgagtgccctgttggagaagaagaccgagctggacaagcgtgggatggggatc
ggrggccacgacttcaacaacgggctcatcaacaagcccatgagctgccctcggcctccg
cttctttccaaagacccctcagcagatcctcgtttgcccttcatcgataagcagatgcag
agtggaatgtttggcggcagtggagcagcacaagcccgggccatgcagcagccgcagccg
cagccgcctcctcagccaccagtgctgcctctcagctcctctcaycctagtctacgtgct
caagtgcctcagtttctctcccctcaggttcaagcacagctcttacagtttgcagcaaaa
aacattggtctgaatcctgcacttttaacctcaccaataaaccctcaacatatgaccctt
ctgaatcaactttaccagctgcaactgacgtaccagcgtttacaaattcagcagcagatg
ttgcaggcacagcgcaatgtttctggccccattcgacaacaagagcagcaagttgcacgt
acaatcaataacatgcagcagcagatccaacagcaccagcgtcagctggcccaggcccta
ctgatgaaacagcagcaacagcagcagaccccctcccactcgggtctgcaccctggtgga
gccaaatccaccctggaracatttccaggtcacccccagactccaggcctccccgacctg
cagaccaaagagccacagtcctctcccaacacctacaacccctacgctctctctggactg
aatccaaacatgaatccgaactgtatggatgtaggcagtcttcctttgaaagacccaccc
cagccccagtcacggctgtcacagtggacacaccccaactccatcgaaagcctttctgga
aactcctctcctcttgagcccaacttagggaagcatggtgccaatctgggccctccgggg
aagccccctcagatggacgactcatacaacccctacaacctgatgtccagctcagagtct
cccaccagcccgcttgttcctccagagagctgggggccgagcaagaacagcagtgacaag
atgacgaacgggaccaacatcaactggcctccagagttttgtcctggtgtaccctggaag
ggtctacagaatatagaccccgagactgaccccaacgtgactccaggcagtgtccccagt
ggacccaccatcaacaccaacatccaagatgtcaaccgctacctactgcgggacaggagt
ggaggctcctctcccacttcatgtcagagcgaggctctgcctccgtccactgattggcca
gtcagtgcctacactagctcgttcagtctttcgtccccagagatggacgatgcaggtaaa
ctgtcagagatgaaatcaacctggtctccaggccccatcgctcaragccagccttctctg
tcccacgagctgtggaaggtcccccagggcccacggagcagcaccactgcgccctcccgc
cccccacctggcctcacgaacacaaagccctcctccacctggggtgggaactctctgggt
ctggcacaaggctggagcagctcctacgccacagcaggtaccacatggagtacggacagc
tctaaccggaccagcagctggctggttctgagaaacctcactccacagattgatggttcg
actctgcgtacactgtgcatgcagcacggcccactcatcacattccacctcaacctgaca
cagggaaacgccgtggtgcgctacagctccaaggatgaagctgctaaggctcaaaagtcc
ctgcacatgtgtgtgcttgggaacaccaccatccttgcagagtttgcaggggaagaggaa
gtcaaccgcttctttgcacagagccagtcgctcggtggaaccaccagctggcaggccact
ccaggcaccaaccagacgaggatggggggagccgggtccggagccgctcaccctatcggc
cactcacctcactggaacaacaataacaacggcggcgtaagcggcggcagtagcgggctc
ggagcggctggaacgaaatcgggaggagagctgctttggggcggagttcagcagtattcc
agcttgtggggacccccgagtggagaggagggacgggtcatggggagccccacgccaatc
aacacgctgctgcctggtgacctgctgagtggcgagtccatgtag
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integrated database retrieval system
