Austrofundulus limnaeus (annual killifish): 106535909
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Entry
106535909 CDS
T06063
Symbol
ercc4
Name
(RefSeq) DNA repair endonuclease XPF
KO
K10848
DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03420
Nucleotide excision repair
alim03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
106535909 (ercc4)
03460 Fanconi anemia pathway
106535909 (ercc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
alim03032
]
106535909 (ercc4)
03400 DNA repair and recombination proteins [BR:
alim03400
]
106535909 (ercc4)
DNA replication proteins [BR:
alim03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
106535909 (ercc4)
DNA repair and recombination proteins [BR:
alim03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
106535909 (ercc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC4
HHH_5
Motif
Other DBs
NCBI-GeneID:
106535909
NCBI-ProteinID:
XP_013888510
UniProt:
A0A2I4D8D4
LinkDB
All DBs
Position
Unknown
AA seq
894 aa
AA seq
DB search
MAGKLLEFETEMFLSLFGCDGLLVAAEGLGIDRVLLQFMQVYSEKDSLVLLLNTTTPEQE
YFTEQLKIEGVTHLPRTVTSDVQSAERYQVYTEGGVLFVTSRILVVDFLTDRIPAHLISG
ILVYRAHKIIESCQEAFILRLFRQKNKTGFIKAFTDKATAFSSGFCQVERVMRNLFVKKL
YLWPRFQASVNTALDKHKPEVVELHVSLTXAMRAIQSSILDLMSACLKELKRYNPTLEAE
DLSLENTLGNGFEKTVRHYLDPLWHQLGAKTKALVQDLKVLRVLLLYLTQYDCVTFLNLL
ESLRSSQKNFGSNSGWLFLDSSTSMFVNARGRVYRIPETKKKLKVGADAEKPKSSTASEV
KRELVLERSPKWEALREVLEEIEKENKNSQHEAGRVLICASDDRTCAQLQQCIRHGSDWL
LNRLYTRTIAKRDSSAAAAFELDSDKKAKKRVXKGSKGKEPAKKNLTKTTKSKSRPSLTL
TQMMGQEESTEEAVMGSSGDEEDEGEEEQLKLDLSSDAYYGVLKEPLTVIHPLKGCTDPH
SLTRVLHEVEPSFVVLYDAELSFVRQLEIYKANRPGKQLRVYFLIYGGSTEEQKYLTTLS
KEKKAFEHLIREKATMVIPEEREGRGDTNLDLARSLEPANATTNTRKAGGQEQSTEPSRV
IVDMREFRSELPSLLHRRGLDIEPVTLEVGDYILTPDTCVERKSVSDLIGSLQSGRLYTQ
CLSMTRYYRKPVLLIEFDSSKPFSLTARGDFRNEISSNDISSKLTLLTLHFPRLRILWCP
SPHATAELFLELKQGRPEPDASAAQAVTAESDTVAESADLYNPGPYDFLLKMPGVSTKNC
RALIKHADSLADVAKLSQNKLAEILGNANNARLLYEFLHNVADVPAPAQKSKQS
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atggcggggaagcttctggagtttgagaccgagatgtttctgagtctttttggttgtgac
gggctgctggtggcggcagagggtctggggatagaccgcgtcctgctacagttcatgcag
gtttactcggagaaagacagcctcgtccttctgctcaacacaaccacacctgaacaggag
tattttacagagcagttgaaaatagaaggtgtaacgcacctgcccaggacagtgaccagt
gatgttcagagtgctgaacggtaccaggtttacactgagggaggggtcctgtttgtcacc
agcagaatcctggtggtggacttcctcacagaccgcatccctgctcatctcatatcaggt
atcctggtgtatcgagctcataagatcattgagtcgtgccaggaggccttcatccttcgc
ctgttcagacagaagaataaaactggcttcattaaggccttcacagataaggccacagct
ttctcctctggcttctgtcaggtcgaacgtgtcatgaggaacctgtttgtcaagaagctc
tacttgtggcccaggttccaagcgtctgtgaacacagcgctggacaaacacaagccagaa
gtggtggagctgcatgtgtcattaacascagcaatgagggccatccagagctccattctg
gacctgatgagcgcctgtctgaaggagctgaaacgatataaccctactctggaggccgag
gacctgtctctggagaacacactaggaaatggatttgaaaagactgttcgtcactaccta
gaccccctgtggcatcagctaggagcaaaaactaaagccctggttcaggatctcaaggtg
ctcagagtccttctactctacctcactcagtacgactgcgttaccttcctcaacctgctc
gaatctctgcgctccagccaaaaaaactttggctcaaattcaggatggctgtttctggac
tcgagcacctccatgtttgtgaatgctcggggcagagtgtaccgcattccggagaccaaa
aagaaactcaaagtaggagcagacgcagagaaaccgaagtcttccactgcctcagaggtg
aagagggagctggtgctggagaggagtccgaagtgggaggctttgagggaggtgctggag
gagatcgagaaggagaacaagaactcacaacatgaagcaggtcgtgtgctgatttgtgca
agtgatgaccggacttgtgcccagctgcagcagtgcatcagacacggctctgactggctg
ctgaatcgactgtacacccgcaccatcgctaaacgagactcctcagctgctgctgccttt
gaactggactcggacaaaaaggcaaaaaaacgggtcmaaaagggaagcaaaggaaaggag
cctgcaaagaaaaacctcacaaagaccacaaaaagcaaaagcagaccctctctgaccctg
acccagatgatggggcaagaggagtccaccgaggaggcggtgatgggcagcagtggagac
gaggaggacgaaggcgaggaagagcagctgaagctcgatctgtcatcagatgcttattac
ggtgtcctgaaggagccactgacggtcatccaccccctgaaaggctgcaccgacccacat
agtttgacccgggtgctgcacgaggtggagcccagcttcgtggtactgtacgacgcagag
ctgagctttgttcgccagctggagatctataaagctaatcggcccgggaagcagcttcga
gtktacttcctgatctacggaggctcgacagaagaacagaagtatctgacgacgctgtca
aaggaaaagaaggccttcgaacatctcatcagagaaaaagcyacaatggtcatcccagag
gagagggaggggcgaggagacaccaacctagacctggccaggagtttagagcctgccaac
gccacaaccaacacccgcaaagcaggaggccaggagcagtccacagagccgtcccgagtc
atcgtggacatgcgtgagttccgcagtgagctaccctcgctgcttcaccgccgcgggctg
gacatcgagcccgtcaccctggaagtgggcgactacatcctgaccccagacacctgcgtg
gagcgtaagagcgtcagtgacctgattggctcgctgcagagcggtcgcctctacacccag
tgcctctccatgacccgctactacagaaaaccagtgctgctcatcgagttcgactcgtcg
aaacccttttccttgacggctcgcggagatttccgcaacgagatttcatcgaatgacatt
tcttccaagctcacgttgctcacgctgcactttcctcggctccggatcctgtggtgcccc
tcccctcacgccacagctgaactcttcttggaactgaagcagggccgccctgagcctgat
gcttctgcagcccaggctgtcacagctgagtcagacacggtggctgagtcagctgacctc
tacaaccctgggccgtatgacttcctgttaaaaatgccgggggtcagtacgaaaaactgc
agagctctgataaaacatgctgacagcctggcagatgtagccaaactcagccagaacaaa
ctagctgaaatacttgggaatgctaataatgctaggttgctttatgagtttctgcataat
gttgctgatgttcctgctcctgcacagaaaagcaaacaatcatga
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