Austrofundulus limnaeus (annual killifish): 106536121
Help
Entry
106536121 CDS
T06063
Symbol
brip1
Name
(RefSeq) Fanconi anemia group J protein
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03440
Homologous recombination
alim03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
106536121 (brip1)
03460 Fanconi anemia pathway
106536121 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
alim03400
]
106536121 (brip1)
Enzymes [BR:
alim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106536121 (brip1)
DNA repair and recombination proteins [BR:
alim03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
106536121 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
106536121 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Motif
Other DBs
NCBI-GeneID:
106536121
NCBI-ProteinID:
XP_013888765
UniProt:
A0A2I4D943
LinkDB
All DBs
Position
Unknown
AA seq
1160 aa
AA seq
DB search
MSSPVDYTIGGVKIQFPCKAYPSQLAMMNSIIRGLNYGQHSLLESPTGSGKSLALLCSTL
GWQQAQLAKLQEQTGSTGDKSQSSKNPXKKSEPPSPCQCVCHSKAATGQPDVVDLTASPC
KDPVQTPPTAPDHASLPEESQNKATLASRLSEKFQASLGSQSDQDGDFRTDRKRLRPAEH
KSHKKQRLQMGVIFIDDEEPVLEKEPSGAERTGGADGLSSSCHVSEPCTHCSCESAKDSV
KDKDKDARKKIPKIFFGTRTHKQITQIAHEMKRTIYSGVQMTILSSRDHTCVNPDVSPQF
SRNEQCKDLLEAKNGRSCRYYHGVQRMRDQHTLQRAHGLNEAWDIEDLVSLGKRLHSCSY
YAARELMQGASIIFCPYNYLLDPMIRESMEIDLAGQILVLDEAHNIEDCARESASYTVDH
NSLQMSIDDLDGMVKCNIRGSKHESLRDFCYVLLNWMKESQALLSERGYEVACKVWNGKD
ILSIFHDLGITADSVKRLEQHLSGVLEKEERVGVVNGKEDMVLVPTINSSTSAVLKNLFM
VLDFLYRNNRRFAEDYRIALQRTYAWTNQVPPDVPDARGFLVRARPRHRQNVRVKKEVLT
LSFWCLNPAVAFSDLSGLVHSIVLTSGTLSPMDSFSSELDVKFSIQLEANHVIKKSQXWV
GTVGAGPHGRTLCATFQHTETFAFQDEVGALLLHVCQVTAKGVLCFLPSYKMLDKLRDRW
VNTGLWEKLEHQKTVITEPRGGGKGDFDELLQIYYNTIKNCTGMDGALLMAVCRGKVSEG
LDFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDQHCRSRGLLSGHRWYEIQAYRALNQA
LGRCIRHRNDWGALILVDDRYGNNPNKYITGLSKWVRQLVQHHRTFSNAMQSLVAFSERQ
QKVEGACADTQTLGSVGLLTRSQSLPEXPESGSSCDKTAKAQQDTSTQLKTDQGKEAEPL
ETLQFAPGERGAAKPLFSIFTCSPVSTNFKKPIFKEKTPSDSCPSETIQMSSPSVNPEQR
TENCSSETRADPTTTPLSCESETPKSDDEDKTIFFTPELFEGEEDEGSPQKKNSEPTPTP
PPPSASAVERQDCVSQEPIKDMREQKQSEEGEGYETQSRQSSSRSHRLSRSRKRAPPSLR
QVTTKLSNQTRHMQLEFLSG
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcccctgtggactacaccatcggtggggtgaagatccagtttccctgcaaggct
tacccatcccagctggccatgatgaattcaataataagaggcttgaactacggccagcac
tctttactggagagtcccacaggcagtgggaaaagtctggctctactctgctccactttg
ggctggcagcaagctcagctggctaaactgcaggaacaaactggctccacgggagacaaa
agtcagtccagtaaaaacccagytaagaagtcagaacctcccagcccgtgtcagtgtgtg
tgtcacagcaaggcagcgacgggccaaccagatgttgtggatctgactgcatcgccctgc
aaggaccctgtgcagaccccacccacagcaccagaccatgcttcattaccagaagagtct
caaaataaagcaactttagcgtcccgtctgtctgaaaagtttcaagcttctctgggttct
cagtccgaccaagatggtgactttcgaacagacaggaaacgccttcgtcctgcagagcac
aagagccataagaagcagcgtctacagatgggagttatcttcatagatgatgaagaacct
gtgttggaaaaggagccttcaggtgctgagaggacaggtggagcagatgggttgtcctca
tcatgccatgtctctgaaccctgcacccactgctcatgtgaatcagccaaagacagtgtg
aaggacaaagacaaagatgccagaaagaagattccaaagatcttctttggaacacgcaca
cataaacagataactcagattgcacatgagatgaaacgcacaatctattccggcgtgcag
atgaccatcctgtccagcagagatcacacctgtgtcaatccagatgtgtcgcctcaattc
agccgcaacgagcaatgcaaggatctgctggaggccaaaaatggccggtcctgccggtac
taccatggtgttcagaggatgcgggaccagcacacactacagcgggctcatggactgaat
gaagcatgggacattgaggacctggtctctctagggaaacggctccactcgtgctcttac
tacgctgctcgtgaactcatgcagggggcttccatcatcttttgtccttataactacctg
ctggacccgatgatcagggaaagtatggagattgacctggcaggccagatcctggttctg
gacgaggcccacaacattgaagactgtgcaagggagagcgccagctacactgtagatcac
aactctctgcaaatgtccatagatgacctggatggcatggtcaaatgtaacattagaggc
tccaagcatgagagtctcagagacttctgctatgttcttctgaactggatgaaagagagc
caagccttgctgtctgaacgtggatatgaggttgcctgcaaagtctggaatggaaaggat
attctgagcatctttcatgacttgggcataacagctgacagcgtcaaaaggctggagcaa
cacctgtcaggtgtgttggagaaggaggagcgtgttggtgtggtcaatggtaaggaggac
atggtattggtcccaaccataaactcctctacctccgctgtgctcaagaacctcttcatg
gtcctggattttctctacaggaacaaccgccggtttgctgaagattaccgcatagctttg
cagaggacctatgcctggacaaatcaggtcccgcctgatgtccctgatgcccgtggcttt
ttggtccgggcgcgccctcgacatcgccagaacgtgcgggtcaagaaagaagtcctaact
ctgagtttctggtgcctcaacccagctgtggctttctctgacttgagtgggctggtgcac
agcattgtgctgacatcaggaactctgtcacccatggactcgttttcctctgaactggat
gtgaaatttagcattcagctggaggccaaccatgtgatcaagaaatctcaggrttgggtg
ggaaccgttggtgcgggaccccatggtcgaactctgtgtgccaccttccagcacacagaa
acgtttgcctttcaggatgaggtgggtgccttgctgctccacgtctgtcaggtcacagcc
aagggtgtgctctgtttcctgccgtcctataagatgttggacaagctgcgagatcgttgg
gtcaacactggcctgtgggaaaagctagaacatcagaaaactgtcatcacagagcctcgc
gggggtggcaaaggagatttcgatgagcttctgcagatatactacaacactattaaaaac
tgcacagggatggatggggcactgctcatggctgtgtgcaggggtaaggtcagtgaaggc
ctagactttacagatgacaatgccagagcagtggtcacaattggcattccctttccaaac
atcaaagacctccaggtggaactgaagatgaagtacaacgaccagcactgcaggtccaga
gggcttctttctggccatcgctggtacgagattcaggcctaccgagctctcaaccaggcc
ctgggcaggtgcatccgccacaggaatgactggggtgccttaatccttgtggatgaccgg
tatgggaacaatcccaacaagtacatcacaggtttgtccaaatgggtccgtcaacttgtc
cagcatcacagaaccttcagtaacgccatgcagtctctggtagcattctctgagaggcag
cagaaagtggagggggcctgtgctgacacccagaccctcggctctgttggcttattaacc
aggagccaaagtctgcctgaakgtccagagtcaggcagctcatgtgacaaaacagctaaa
gcccagcaggacacaagtacacaactgaaaactgaccagggtaaagaagcagaaccattg
gagacgctgcagtttgctcctggtgaacgaggagccgccaagcctctgtttagcatcttc
acctgcagccccgtaagcaccaacttcaagaagccaatatttaaagaaaaaacaccaagt
gattcctgcccgtcagagacaatccaaatgtcctcgccatcagtgaatcctgagcagagg
actgaaaactgctccagtgaaaccagagcagaccccaccacaacccccctcagctgtgag
agtgaaacacccaaatctgatgatgaggataagactattttctttactccagagcttttt
gagggtgaagaagatgaaggtagcccacaaaaaaagaattctgagccaactcccacccca
cccccgccgtcagcctccgctgtggaaagacaggattgtgtgtcacaagaaccgatcaag
gacatgagagaacagaaacaaagtgaggaaggagagggctatgagacccaaagcagacag
agcagcagcagatctcacaggctgtccaggtccaggaagagagcccccccctcactcaga
caggtaaccacaaaactcagcaatcaaactagacacatgcagttagaatttctatcaggt
taa
DBGET
integrated database retrieval system
