Austrofundulus limnaeus (annual killifish): 106536180
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Entry
106536180 CDS
T06063
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim04382
Cornified envelope formation
alim04510
Focal adhesion
alim04512
ECM-receptor interaction
alim04518
Integrin signaling
alim04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106536180
04518 Integrin signaling
106536180
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106536180
09142 Cell motility
04820 Cytoskeleton in muscle cells
106536180
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
106536180
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
alim04147
]
106536180
00536 Glycosaminoglycan binding proteins [BR:
alim00536
]
106536180
Exosome [BR:
alim04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106536180
Glycosaminoglycan binding proteins [BR:
alim00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106536180
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106536180
NCBI-ProteinID:
XP_013888842
UniProt:
A0A2I4D9D7
LinkDB
All DBs
Position
Unknown
AA seq
1645 aa
AA seq
DB search
MGAGLQHEDRRLLTSCFTSCSLLWCLLVFLLLAPPAAAGGDLTELCGGRDCTTCRCFPAK
GARGAPGPLGPQGLQGPPGFPGLQGPPGQKGQRGDEGPAGAPGLKGDVGSRGVPGFPGIN
GVPGHPGPAGGPGLPGLDGCNGTRGDRGHRGLPGEQGPNGELGFPGPKGYPGDQVFHSIQ
FPGVPGDAGLRGLPGLQGEQGQPGQVGAVGPAGPDGVNGLPGLPGLRGPPGEKGRLLPGQ
KGDEGDQGPEGPPGPFEYVDPPEDLYIKGEQGPEGVKGKCGVQGPPGPDSLPGIKGETGI
VGFPGSRGDPGRPGLPGYKGIKGSKGSQGLPGLIGQKGLQGTMGDVGPKGVSQSPYVTNT
GEDGEPGAPGRRGIPGDRGFMGLHGPRGSPGGSVPGPPGSDGQEGIQGFKGDKGNPGQMI
EELEPGEPGKPGQPGFKGPKGEPGFPGTYCLQGAPGHTGEPGQQGPPGAFGSSGFKGDPG
TCFCGPPIEMRGPPGPHGNTGAPGNPGGKGPEGLKGDKGLPGDRGVAGEQGMVGFRGVKG
SKGQKGDLTTVMIKGRKGDQGPMGPTGGRGFSGRNGLGGPPGAPGNPGPQGESFVGFPGD
QGFQGLSGLKGFWGPAGPPGQGVPGAIGLRGLPGKPGFPGFPGFQGLKGEKGDTPCRYQR
PGPSGQKGDPGQPGGPGRPGPKGYQGIRGPDGPKGNKGRKGLPGPPGPQGPRGAVGDPGD
EGTEGLSIDGGPGSPGLRGLPGLPGSQGDNDNGPPGPSGFPGPLGFPGPKGVPGPPGPEG
TAGVLGLPGDPGPKGQRGQNGNPGATGPQGPTPDQCCAGSPGEMGLSGPRGPLGHPGYPG
EKGQIGDGGLSVTGSKGQAGEPGGQGSPGSPGPRGPPGSNGDSGLSGVFGQKGLTGPQGQ
EGRPGPSGTMGCPGDQGMTGQRGDMGRDGAQGHHGPNGQKGCKGNQGPPGQINLITSKGS
RGQQGPLGLTGSPGPRGSKGAKGAAGYPGFQGSVGPPGIKGLPGPQGPRGKPGPPGPPGL
KGHQGNNGFPGLKGDLKGDSVGCPGVPGDKGYPGATGVTGFSGHLGDFGPPGLTGAPGQK
GCKGLPGLRGYHGEGGVLGPPGPRGLSGHPGLPGESGADGPSGLQGCQGLQGPPGPPGLH
GLDGLKGVKGDMGTRGLSSQGPPGFPGPQGQKGPQGPEGITCPPHLGPPGPRGPPGPKGP
EGGSGPPGPPGXSCEIPYPGVLGDRGYEGLDGDPGCLGEIGDPGPNPPICGDIGDNGDPG
CAGPKGPKGLKGYHGPQGCPGDPGPKGMTGDPGFMGEPGSRAPKGDPGLSGPKGPKGPDG
PPGPKGEKGRELPCPLYPIAENGPQGQRGPPGPPGEMGLPGETGPPGQKGFKGERGQDGL
TGSVGPSGEKGVNGEHGLPGEMGVDGSQGEPGAAGDRGPDGGTNNLNLGFLLVKHSQTTE
IPSCPEDMTQLWDGYSLLYLEGQERAHPQDLGQAGSCVPVFSTLPFFVCGVKGCGYASRN
DKSYWLATMAEAPRRPSEGTAIQNHISRCVVCEAPSSAVALHNPDLSQAPDCPENWRSLW
SGHSFLMYTGGGDEGGGHSLTSSGSCLPKFRTHPFVECQGARGTCHFFSNIYSFWLTTLR
DTPTTLSEPTQQEEHAAKCQVCIHQ
NT seq
4938 nt
NT seq
+upstream
nt +downstream
nt
atgggggcggggctccagcatgaggacaggaggctgctgacctcctgcttcacctcctgc
agcctcctctggtgtctccttgtcttcctgctcctcgctcctcctgcagctgccgggggc
gacctgacggagctgtgcggggggcgggactgcaccacctgtcggtgtttcccggcaaaa
ggagcgaggggtgctccaggtcctttgggtcctcagggtctgcagggtccaccaggcttc
ccgggccttcagggacccccaggacagaagggycaaagaggagatgagggtccagcagga
gctcctggactgaaaggagatgttggaagtcgaggtgttccgggttttccaggtataaac
ggagtcccgggtcacccaggacctgctggaggtcctggtcttcctggtctggatggatgt
aatggaacccgaggagacagaggacatcgtgggttgccaggagaacaaggaccaaatgga
gaactgggttttccaggaccgaagggatatccaggagatcaagtatttcattccattcag
ttcccaggagttcctggagacgctggcctcaggggcttacctggtctgcagggggagcag
ggtcaaccgggtcaggtgggagctgttggtcctgcaggacctgatggggtcaacggccta
cctggtcttcctggtttgaggggtccacctggagaaaaaggtcgattactgccgggacag
aaaggagacgagggagaccagggccctgaagggcctccagggccctttgagtatgttgac
cctcctgaggacctgtacatcaaaggggaacagggtccagaaggggtcaaagggaaatgt
ggcgttcagggaccacctggtccggactcactccctgggatcaaaggagagactgggatt
gtggggtttccagggtccagaggtgacccgggtcggccaggtctgcctgggtacaaaggt
atcaaggggtccaaaggatcccagggtctcccaggtctgattggacaaaagggtcttcag
ggcaccatgggagatgtgggccccaaaggcgtctctcagagtccttacgttaccaacaca
ggagaagatggtgaacctggggcccctggacggagaggtattccaggggacagagggttt
atgggactgcatggtcctcgaggatcacctgggggatccgtaccaggaccacccggttct
gatggtcaggaaggaattcaagggtttaaaggggacaaaggaaatccaggtcagatgata
gaagaactggaacctggagaacctggaaaaccaggacagccaggattcaaggggccgaag
ggagagcctggtttcccaggaacttactgccttcaaggtgccccaggacatactggagaa
ccaggtcaacaggggcccccaggggcctttggttccagtgggtttaaaggtgaccctggc
acctgtttctgtggccctccaattgaaatgaggggcccacctggtccacatgggaacact
ggggccccaggaaatccaggaggcaaaggaccagagggcctgaaaggagacaaaggttta
cctggagacagaggagtggcaggagaacagggtatggttggatttcggggagttaaagga
tctaaaggacagaaaggagatttaaccacggtgatgataaaaggtagaaagggagaccag
ggcccaatgggtcctacaggtggacgaggattctcaggaagaaatggactcggtgggcct
ccaggggcccctgggaaccctggcccccagggtgaaagttttgttggcttcccgggcgat
caaggcttccagggactttcaggactaaaggggttttggggaccagcaggtcctccagga
caaggtgtgcctggagctataggactgcgtggactccctggaaaacctggatttcctggc
tttcctggctttcagggcctaaagggggaaaaaggtgatactccctgtagatatcaaaga
cctggtccaagtggacagaagggagaccctggacaaccaggtggtccaggtcgccctggt
cctaaaggttatcaaggcatcagaggaccagatgggcccaaaggaaacaagggtcggaaa
ggacttccaggaccacctgggccacaaggacctcgaggagctgttggagaccctggagac
gaaggaaccgagggtctcagtattgatgggggtccaggctctccaggactccggggcctc
cctggactcccaggatcacaaggtgacaacgataatggccccccaggaccttctggcttt
ccaggaccacttggrtttccaggacctaaaggtgtccctggtccccctggtccagaagga
acagcaggtgtcctgggtctgcctggggatcctggaccaaagggccagagaggacagaat
gggaacccaggagcaactggtccccagggcccaacacctgatcagtgttgtgcaggttcc
cctggtgaaatgggcctcagtggccctcgaggacctcttggccatccaggctatccaggt
gagaaaggtcagattggggatgggggtctttcagtcactggttctaaaggtcaagctggt
gaaccaggaggtcaaggttcaccagggagcccagggcctcgtggtccccctggttctaat
ggagactctggacttagtggggtctttggtcaaaaaggtctgactggaccccagggccaa
gaaggaagaccagggccttcagggaccatgggatgccctggagaccaaggcatgactggg
cagaggggagacatgggacgagatggagctcaaggacatcatggaccaaacggacagaaa
ggctgtaaaggaaatcagggacctccaggacaaatcaatctaatcacctctaaaggttcc
agaggacaacaaggaccccttggcctcacaggatcccccggaccacgaggaagtaaaggt
gccaaaggygctgcaggttatcctggattccaaggctcagtcggacccccagggattaaa
ggacttccaggacctcaaggaccaaggggtaaaccaggacctccaggaccacctggactc
aaaggacatcaaggaaacaatggcttccctggactgaaaggagacttgaaaggagactct
gttggttgtcctggtgtacctggagacaaaggctatcctggagctacaggagtcactggc
ttttctggacatttaggagacttcgggccacctggcttgactggagctccaggacagaaa
ggatgcaaaggactcccaggtctcagaggttaccatggagaaggaggtgtacttggtcct
ccggggcccagaggtctctctgggcatccaggtcttcctggtgaatcaggtgcagatggc
ccttctggactgcagggttgccagggactccaaggtcctcctggacctccaggacttcat
ggactggatggactgaaaggagtgaaaggcgacatggggaccagaggtctgagctcgcag
ggtcctccaggtttcccaggaccacaaggacagaaaggtccacaaggtcctgaaggtatt
acttgtccaccacatctaggaccaccaggacccagaggaccaccaggacccaaagggcct
gaaggtggttctggacctccaggtccacctgggmagagctgtgaaatcccatacccagga
gttctaggagatcgcggttatgagggcctagatggagacccagggtgccttggagaaata
ggagacccaggtccaaaccctccaatctgtggagacattggggacaatggcgatccaggg
tgcgcggggcctaaaggacctaaaggactaaaaggatatcatgggccacagggctgccct
ggagayccaggtccaaaagggatgacaggagatcctggttttatgggagaacctgggagt
cgagctccaaaaggtgaccctggactctctggaccaaaaggmccaaarggaccagatgga
ccacctggtccaaagggggagaaaggacgagaacttccctgtcccctctaccctatagca
gaaaatggcccccaaggacaacgtggaccccccggtccaccgggggaaatgggcctccct
ggagaaactggtccaccaggacagaaaggttttaaaggagaacgtggacaagatggactg
actggttctgtgggaccaagtggtgaaaagggagtcaacggagaacatggtttgccaggg
gagatgggggtggatggatctcaaggcgaacccggtgcagcaggggaccggggtcctgat
ggagggactaacaacctgaatctggggttcttgttagtgaaacacagccagacgacagaa
attccctcctgcccagaagacatgacccagttgtgggacggatacagtctgctgtacctg
gagggtcaggaacgagctcatcctcaggatctgggtcaggcgggctcatgtgtgccagtg
ttctccacgctgccgttcttcgtctgcggtgttaaaggctgcggctacgcctcccggaac
gataagtcttactggttagccacaatggcagaggctccaagaagaccctctgaaggaacg
gccatccaaaaccacatcagccgctgtgtggtgtgtgaggctcccagctcagcggtggcg
ctgcacaaccccgacttaagtcaagcaccagactgccccgagaactggaggagcttatgg
agcggacactccttcctaatgtacacaggtggaggtgatgaaggtgggggccactctctg
acgtcctcaggaagctgcctgcctaagttcagaactcaccccttcgtggagtgtcagggc
gcccgaggaacctgccacttcttctccaacatctacagcttctggctgaccacgctcaga
gacacgcccaccacgctgagcgagcccacccagcaggaggagcacgccgccaagtgtcaa
gtctgcattcatcagtga
DBGET
integrated database retrieval system
