Austrofundulus limnaeus (annual killifish): 106536248
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Entry
106536248 CDS
T06063
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
106536248 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
alim01009
]
106536248 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
alim04515
]
106536248 (pcdh20)
Protein phosphatases and associated proteins [BR:
alim01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
106536248 (pcdh20)
Cell adhesion molecules [BR:
alim04515
]
Cadherins
Protocadherins
106536248 (pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
TM_ErbB1
DUF6899
Motif
Other DBs
NCBI-GeneID:
106536248
NCBI-ProteinID:
XP_013888911
UniProt:
A0A2I4D9J2
LinkDB
All DBs
Position
Unknown
AA seq
887 aa
AA seq
DB search
MFSSRQLSHKGGIWGFCIFLLYTTPPSCLANFSQAKELIYKIKEGLPKGTFIGAIGVDLH
LDFTVDPPFLFSLSQKKVSEQYVNLNNTSGELFTSATELDRESLCPYSSEGQACVLPLDV
IVLPQQYFQLVKVKILIEDVNDNRPKFPTDEIWMSIPENAQINARYAVEQSAVDPDLGSF
GVQTYWLVNDFGVFTLDVEENEGGELTPFLIVTETLDRETQEEYITDIIAEDGGTPPLLG
AATLKIIITDVNDNCPKFTESQINVTLRGNSTKGTHLARLHAFDPDLGANAQISYAYSDR
VPRDTRSLFHLDKLTGVIKLARNIDTVTATFYKLTXLANGPGCIPAVATVTVHIIRVVTG
PHAIVPRYIATEKDGVVALKESEPAFSPIAFFTVKNIGKNQRVDCYLEGSGPFRLVPYRE
LKNEYLLETTEPLDYEKTQDYELIVVANNTQGIVIKTFLKVQVLDENDNAPVFQQSLVEL
SIEENNPPNTFLTQFQASDEDGGSQGEVIYLLGGNAPGIFVVDRVTGVLTVTTSLDREEK
EKYRFIVRAVDHGTPRRESIATVVLTVEDRNDNSPRFINKDFTFFVPENFPGFGEIGVLS
VTDADAGENGWIALSILNGSDIFMIDTGRGALRARTPLDREQQGTYQLWIEAVDGGEPAL
SSITMVTVLLLDVNDNPPVVLFPQSNQSYMLVLPDTTPGTSITEVYAVDKDTGMNAVIAY
SIIKRKGGEPGSFAIDPETGNITLKRELSNRGLYSLLVKVSDHGQPEPLYSTVMVNFFVN
ETVTNESYIQSLLTRGADIEVEEKPWFVGQMTDGPERYELVPCRLTLIVLSVTCLGLFFM
VVVLTSYICCKRYKKIRKKRSDVEVPLKIKNDSEQFLNRKLRQISNI
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgttcagcagcagacaacttagccataaaggaggaatatggggattctgcatcttcttg
ctgtacacgacccccccttcctgtctggcaaatttcagtcaagcgaaagagctcatctat
aagataaaggagggattaccaaaggggactttcatcggggctattggagtagacttgcat
ttggatttcacagttgatcccccctttttattcagcctttcgcaaaagaaggtcagtgaa
caatatgtgaacctaaataataccagcggggagcttttcacatctgctactgagctcgac
agggagagcctctgtccatacagctccgagggacaggcgtgtgtcctcccactggatgtg
attgttttgcctcagcagtactttcagctcgtcaaagttaagatcctgattgaggacgtg
aacgacaataggcccaagttcccgactgatgaaatctggatgtccatcccagaaaatgcg
caaatcaatgctcgatacgcagtggagcagtccgccgttgacccagacttgggtagtttt
ggagttcagacttactggctggttaacgactttggtgtgttcacactggacgtagaggag
aatgagggtggtgagctgacaccattcctgattgtgacagagactttggacagggagaca
caggaagaatacattacggatattatagcagaggatggagggacccctcctctgctcgga
gcagctactttaaaaatcatcatcacggatgtaaacgataactgccccaaatttacagag
tctcaaattaacgtcaccctgcgtggaaattccaccaaaggaacacatttagctcgactg
catgcctttgaccctgaccttggtgctaatgctcagatcagctatgcttacagtgaccgt
gtgccaagggatacccgcagcttgttccatttggacaaactcacaggggtgatcaagctc
gcccgaaacatagacacggtcacagccacattttacaaactcaccrttctggccaacgga
cccggttgtatcccggctgttgcaactgtaactgttcacatcatcagagtagttactgga
ccccatgctatcgtaccccggtacattgcaacagaaaaagacggagtggtggctctaaag
gagtctgagccagctttctctccaattgcttttttcaccgttaaaaacattggaaagaac
caaagagtggactgttatttggaggggtctggtcccttccggctcgttccgtaccgagag
ctcaagaacgaatacctcctggaaactacagagcccttggactacgagaagactcaggat
tatgagctaattgtggtggctaacaatactcaaggtatagttatcaagacttttctgaaa
gtgcaggttttggatgagaacgacaacgcacctgtgttccagcagtctttggtggaatta
tcaatcgaggaaaacaatccaccaaacacctttctaacccagttccaagcctcagatgag
gacggtggaagtcaaggagaagtaatttacctccttggaggcaatgcgcctgggattttt
gtcgtggatcgtgtcacgggtgtcctaactgtgacaacatcgctcgaccgtgaggaaaaa
gagaaatacaggtttatagtcagagcagtggatcatgggacgccacggagggagtcgatc
gcaacagtggtgttgacagtggaggatcgcaatgacaacagtccacgtttcatcaataag
gacttcactttctttgtgcctgagaacttcccagggtttggtgagattggagtcctgtct
gtaacagatgccgatgctggagagaatggctggatagccctgtccatcctcaacggaagt
gacatcttcatgatagacaccggtcgaggagctctaagagccaggacaccgctggatcgt
gagcagcaaggcacgtaccaactttggattgaggcagttgatggtggggaacctgcgctt
tcttctattaccatggtcactgtgctgctgttggatgtaaatgataatccaccagtagtc
ctcttccctcagtcaaatcaatcgtacatgctagtgctacctgatacaaccccaggaaca
tctatcacagaggtgtacgctgtggacaaagacacaggcatgaacgccgtcatcgcgtat
agcatcattaaaaggaaaggcggtgaaccgggttcgtttgccatcgacccagaaacagga
aatatcacattaaagagggagctcagcaacaggggcctttacagccttctggtgaaggtc
agtgatcacggccaacctgagccgctttattcgacggtcatggtaaacttctttgtcaat
gaaaccgtgactaacgagagctacatccaaagtctgctgacccgaggggcggacatagag
gtggaggagaagccctggtttgttggccagatgaccgatgggcccgagagatacgagctg
gtcccctgtcggctcaccctcattgtcctttcagtgacatgtctggggctgttcttcatg
gttgttgtactgacatcttacatatgctgcaagaggtacaagaagatcaggaagaaaaga
tcagatgtggaagtacctttaaaaataaagaatgactctgaacagtttttaaacagaaag
ctcaggcagatctccaacatctga
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