Austrofundulus limnaeus (annual killifish): 106536252
Help
Entry
106536252 CDS
T06063
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
alim
Austrofundulus limnaeus (annual killifish)
Pathway
alim03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
alim00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106536252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
alim03021
]
106536252
03041 Spliceosome [BR:
alim03041
]
106536252
03036 Chromosome and associated proteins [BR:
alim03036
]
106536252
Transcription machinery [BR:
alim03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
106536252
Spliceosome [BR:
alim03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
106536252
Complex B
106536252
Complex C
U2 SnRNP specific factors
106536252
Chromosome and associated proteins [BR:
alim03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
106536252
TFTC complex
106536252
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
WDR55
Motif
Other DBs
NCBI-GeneID:
106536252
NCBI-ProteinID:
XP_013888913
UniProt:
A0A2I4C7V8
LinkDB
All DBs
Position
Unknown
AA seq
1217 aa
AA seq
DB search
MFLYNITLQRATGISHAIHGNFSGTKMQEIVVSRGKILELLRPDANTGKVHTLLTVEVFG
IVRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNQMEKVHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRLKYFDTIPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVTCGRGPRSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGDKGSM
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRRFVIHPETNNLVLIETDHNSYTETTKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGSPKAGAGQWASLVRLVNPIQGSTLDQVQLEQNEAAFSVAVCRFTNTG
DDWYVLVGVARDMILNPRSVGGGYIYTYRLSSGGEKLEFVHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIYTVGQRVIISDVQESLFWVRYRRNENQ
LIIFADDTYPRWVTTACLLDYDTMASADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVVVNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacatcaccctgcagcgggccaccggcatcagccacgccatccatggc
aacttctcaggaaccaagatgcaggagatcgttgtttccaggggaaagatcctggagttg
ctgcgtccagatgccaacacagggaaggttcacactcttctgacggtggaggtgttcggc
atcgtcaggtccctgatggcgttcagactcacaggaggaaccaaagattacatcgttgtg
ggaagtgacagcggtcgtatcgtcatcctggagtatcatccatctaaaaaccagatggag
aaggtccaccaggagacgtttgggaagagcggctgccggcgcatcgttccgggacagttc
ctggctgtggaccctaaaggccgagctgtcatgattggagccatagagaaacagaagctg
gtttatatcctgaacagagatgctgctgccaggctgaccatctcctctcctctggaggcc
cacaaagcaaacacgctggtctaccatgtggtgggagtggacgtgggctttgaaaaccca
atgtttgcctgcttggagatggattacgaggaagctgacaacgaccccacaggagaagct
gctgcaaacactcagcagaccctcaccttctacgagctggacctgggtctgaaccacgtg
gtccgaaagtacagcgaagctttggaggagcatggaaacttcctcatcacagttcctggt
ggttctgatgggcccagtggagttctgatctgctctgaaaactacatcacctacaagaac
tttggagaccagccggacatccgctgtcccatcccccgccgcaggaacgacctggatgac
ccggagcgaggcatgatctttgtctgctctgccacccacaaaaccaagtccatgttcttc
ttcctggctcagaccgagcagggggacatctttaaggtcactctggagacagacgaggag
atggtgacagaaatcaggctgaaatacttcgacaccatccccgtggctgcagccatgtgt
gtcctgaagaccggcttcctgtttgtggcctcagagtttggaaaccattacctgtaccag
atcgctcacctgggcgacgacgacgaggagcctgagttctcctctgccatgccgttagag
gagggagacaccttcttcttccagcctcgacccttgaagaacctggtcctggtggacgaa
caggagaacctgtcccccatcatgtcctgtcagatcgctgatctggccaacgaggacacg
cctcagctgtacgtcacctgtggacgaggacccaggtccaccctgagggtgctgcgacac
ggactggaggtgtcagagatggccgtctctgagctgcccggtaaccccaacgctgtgtgg
accgtacgcagacacgtggaagatgagttcgacgcctacatcatcgtgtccttcgtcaac
gccaccctggttctgtccatcggagagaccgtggaggaagtgacggactctgggtttctg
ggaaccaccccgaccctctcctgctccctgctgggtgaagacgccctggttcaggtttac
ccagacgggatccgtcacattcgagcagacaagcgtgtgaacgagtggaagacccccggt
aagaaaaccatcgtccgctgcgccgtgaaccagcggcaggtggtcatcgccctgacgggg
ggagagctggtctactttgagatggacccgtccggccagctcaacgagtacacggagagg
aaggagatgtctgcagacgtggtctgcatgagtctggccaacgtcccgcccggtgagcag
cgctctcgcttcctggccgtgggactggtggacaacacggtccggatcatctccctggac
ccgtcggactgtctgcagcctctgagcatgcaggctcttcctgctcagcctgagagtctg
tgcatcgtggagatgggaggggtggagaaacaggatgagctgggagataaaggctccatg
ggcttcctctacctgaacatcggcctgcagaacggtgtgctgctgaggacggtgctggac
cctgtgaccggggacctgtctgacaccagaacacgctacctgggctccaggccggtgaaa
ctgttcagagtccggatgcagggccaggaagctgttctggccatgtccagccggtcctgg
ctcagctactcctatcagtctcggttccatctgaccccactgtcctacgagactctggag
tacgcctcagggttcgcctcggagcagtgcccagagggaatcgtggccatctccaccaac
actctgagaattctggccttggagaaactgggggctgtcttcaaccaggtggccttccct
ctgcagtacacccccaggaggtttgtgatccacccagagaccaacaacctggttctgatc
gagaccgaccacaactcctacacagagacgaccaaagctcagaggaagcaacagatggct
gaggagatggtggaggctgcaggtgaggacgagcgagagctggctgcagagatggctgca
gccttcctgaatgagaatctgccagaggccatttttggttctcctaaagctggagcaggt
cagtgggcctcgctggtgcgtctggttaaccccatccagggttccactctggaccaggtg
cagctggagcagaacgaagctgcgttcagcgttgctgtgtgtcggttcaccaacacagga
gacgactggtacgtcctggttggagttgccagagacatgatcctcaaccccaggtcagtg
ggtggaggctacatctacacgtatcgtctctcaagtggaggagaaaagctggagtttgtt
cataagacccccgtagaggacgtcccactggccatcgctccgtttcagggacgtgttctg
gtcggagtcgggaagctgctgaggatctacgatctgggcaaaaagaagctgttgcgtaaa
tgtgagaacaagcacgttcctaacctggtgactgggatctacactgtgggccagcgagtc
atcatctccgatgttcaggagagtctcttctgggttcgctaccgccgcaacgagaaccag
ctcatcatctttgcagacgacacgtacccccgctgggtgaccacggcctgcctgctcgac
tacgacaccatggcttctgctgacaagttcggcaacatcagcatcgtgcgtctccctccc
aacaccagcgacgacgtggatgaagaccccacagggaacaaagccttgtgggacaggggt
ctcctgaacggagcctcacagaaggctgaagtggtggtcaactaccatgtaggagagaca
gtactgtccctgcagaagaccaccctgatccctggagggtctgagtccctggtctacact
accctgtccgggggcatcgggatcctggtccccttcacctcacacgaggaccacgacttc
ttccaacatctagagatgcacatgcgctctgagttccccccgctgtgtggcagagaccac
ctcagcttcaggtcctactacttccccgtgaagaacgtgattgatggagacctgtgtgag
cagttcaacagtatggatccacacaaacagaagagcgtggccgaggaactggaccggacc
ccacctgaggtctccaagaagctggaggacatccggacccgctacgctttctag
DBGET
integrated database retrieval system
