Poseidonibacter lekithochrous: ALEK_0749
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Entry
ALEK_0749 CDS
T06860
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
alk
Poseidonibacter lekithochrous
Pathway
alk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ALEK_0749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alk03019
]
ALEK_0749
Enzymes [BR:
alk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ALEK_0749
Messenger RNA biogenesis [BR:
alk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ALEK_0749
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
AAA_22
UvrD-helicase
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QKJ22052
LinkDB
All DBs
Position
768876..770303
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AA seq
475 aa
AA seq
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MSFTQLGLNSDILKAIKEQGYTEPTPIQKQAIPVILQKEDVLAAAQTGTGKTAGFTLPML
NLLSAKSPKKGNKPYVRALILTPTRELASQVAQNVEEYSQYLPIKTSVIFGGVGINPQKA
QLRKGVDIVIATPGRLLDHVSQNSIDLSRVEFLVLDEADRMLDMGFIHDIKKVISNLPSH
RQNLLFSATFSDEIKKLAGGFLNNPKIIEVARRNTSSAQVEQIVHYVKKDQKRNLLCYII
KENNLSQVLVFTRTKHGANRLTDYLKNYNISAAAIHGSKSQGARTKALADFKSNEIRVLV
ATDIAARGIDIELLPNVINYELPNVPEDYVHRIGRTGRAGNVGIAMSLVCNEEFEYLRDI
EKLIKKDLEVVAIDGYTVSKLTKVKKDTSNKNNNSRNSNRNSKPKENKREKRTDRKDDKN
PRNKSAKDNKKRFDKKSENKSLIETWEKELKKEKAKPRNRRISSESQRRVSSRNS
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttacacaattaggtttaaatagtgatatcctaaaagctattaaagagcaagga
tatacagaacctacaccaatacaaaaacaagctattccagttattctacaaaaagaagac
gttttagcagcagctcaaacgggaacaggaaaaacagcaggttttacactaccaatgtta
aatctacttagtgcaaaatctcctaaaaaaggtaataaaccttatgttagagctttaatt
ttaacaccaacaagagagttagcttctcaagttgcacaaaatgtagaggaatacagtcaa
tatcttcctattaaaacttcagtgatatttggaggagttggaatcaaccctcaaaaagca
caattaagaaaaggagttgatatagtaattgcaactcctggaagattattagatcacgta
tcacaaaactcaatagatttatcaagagttgaatttttagttcttgatgaagcagataga
atgttagatatgggatttattcatgatattaaaaaagtaatatcaaatcttccatctcac
agacaaaatcttctattctctgctactttttctgatgaaattaaaaaactagcaggtgga
tttttaaataatccaaaaataattgaagtagctagaagaaatacatcttcagctcaagtt
gaacaaattgttcattatgtgaaaaaagatcagaaaagaaatttattatgttacataatt
aaagaaaataatttatcacaagtattagtatttactcgtactaaacatggtgcaaataga
ttaactgattatttaaaaaattataatatctcagctgctgctattcatggtagtaaatca
caaggtgcaagaacaaaagcattagctgattttaaatcaaatgaaattagagttttagta
gcaactgatattgcggctcgtggtattgatattgaacttttaccaaatgtaattaattat
gagttaccaaatgttccagaagattatgttcacagaatcggtagaactggtagagctggt
aatgtaggaattgcaatgtctttagtttgtaatgaagagtttgaatatttaagagatatt
gagaagttaattaaaaaagatttagaagtagtagctattgatggatatacagtatcaaaa
ttaactaaagttaaaaaagatactagtaacaaaaacaataattctagaaactcaaataga
aactctaaaccaaaagagaataaaagagaaaaaagaacagatagaaaagatgataaaaac
cctagaaataaatctgcaaaagataataaaaaaagatttgataaaaaaagtgaaaataaa
tctttaattgaaacttgggaaaaagagttaaaaaaagaaaaagcaaaacctagaaataga
agaatttctagtgaatctcaaagaagagtttcttcaagaaatagctaa
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