KEGG   Poseidonibacter lekithochrous: ALEK_1575
Entry
ALEK_1575         CDS       T06860                                 
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma70 factor
  KO
K03086  RNA polymerase primary sigma factor
Organism
alk  Poseidonibacter lekithochrous
Pathway
alk02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:alk00001]
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    ALEK_1575 (rpoD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:alk03021]
    ALEK_1575 (rpoD)
Transcription machinery [BR:alk03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     ALEK_1575 (rpoD)
SSDB
Motif
Pfam: Sigma70_r3 Sigma70_r2 Sigma70_r4 Sigma70_r1_2 Sigma70_r4_2 MCR_beta_N
Other DBs
NCBI-ProteinID: QKJ22846
LinkDB
Position
complement(1622295..1624142)
AA seq 615 aa
MSVKDLNKAIEQTVKEYKDSILTFEKIIKIFPKAPSAANVKKFIALIQLYNVTVISSQEQ
AKRMNAEEAKKKRELREKLIENEDDVFDLLKNKELLEWSRSDSPVRMYLREMGQIPLLTK
EEEIEISKKIEMGEDVILDAICYVPYLIDFILEYKEPLVNRERKVKELFRNFDDEDSDDS
DEPEVEAAGDDDEVNGKKQKKLDKRAHTIIESFKVLEKAKKDWLKFLAKEAAKSEDEVHQ
MQHNLAIAFKKKILKEALLDLGPTSKLISEIVKAMETALKSDTGFDSELKRLEYRLPLFN
DTLLQNHQKILDNIVNLSKVQITSMVPEATMVSTYMEIKKLFQTAEASKDGFDLEPEELK
DVLEQIKRGKQITDKAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKF
EYKKGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRINKIIRKGIQENGKEPD
VDEIAKEVGLAVDKVKQVIKITKEPVSLEAPIGSDDDGKFGDFVPDEKAPTPVDNIMKED
LQGQIDQILAQLNEREQAVVRMRFGLMNDASDRTLEEIGKELSVTRERVRQIESSAIKKL
KHPKVGKNLKNYVES
NT seq 1848 nt   +upstreamnt  +downstreamnt
atgagcgtaaaagatttaaataaagcaattgaacaaacagttaaagaatacaaagactct
atattaacttttgaaaaaattattaaaatctttcctaaagctccttcagctgcaaacgta
aaaaaatttatagctttgattcaactatataatgtaacagttattagttcacaagaacaa
gctaaaagaatgaatgctgaagaagcaaaaaagaaaagagaattaagagaaaagttaatt
gagaacgaagatgatgtatttgatcttctaaaaaacaaggaattattagagtggtctaga
tctgattctcccgtaagaatgtatttaagagagatgggacaaatccctctacttacaaaa
gaagaagagattgagatttctaaaaaaatagaaatgggtgaagatgtaattcttgatgcc
atttgttatgtaccatatctaattgacttcattttagaatacaaagaaccgttagtaaat
agagaaagaaaagttaaagaacttttcagaaactttgacgatgaagattctgatgattct
gatgagccagaagttgaagctgctggtgatgatgatgaagtaaatggaaaaaaacaaaag
aaacttgacaaaagagctcatacaattattgagtcattcaaagttctagaaaaagcaaaa
aaagattggcttaaattcttagcaaaagaagcagctaaatctgaagatgaagttcatcaa
atgcaacacaacttagcaattgcattcaaaaagaaaattttaaaagaggctctattagat
ttaggaccaacttcaaaattaatttctgaaatcgtaaaagctatggaaactgcattaaaa
tctgatacaggttttgattctgagcttaaaagattagaatatagattaccattatttaat
gatactctattacaaaatcaccaaaaaattcttgataatattgtaaatttatcaaaagtt
caaattacttctatggttcctgaagcaactatggtttctacttatatggaaatcaaaaaa
ctgttccaaacagcagaagcttctaaagatggtttcgatttagagcctgaagaattaaaa
gatgtattagaacaaattaaaagaggtaagcaaattactgataaagctaagactagaatg
gctaaatcaaaccttagacttgttgtatctattgcaaaaagatatacaaatagaggttta
ccattcctagacttaattcaagaaggtaatattggtcttatgaaagcggttgataaattc
gagtataaaaagggatataaattctctacttatgctacatggtggattagacaagcaatt
tcaagagccattgcagaccaagctagaactattagaattccaattcacatgattgagacg
attaacagaatcaacaaaatcattagaaagggaatccaagaaaatggtaaagagccagat
gtagatgagatcgcaaaagaagtaggacttgcagttgataaggtaaaacaagtaattaaa
attactaaagaacctgtatcacttgaagcacctattggatctgatgatgatggtaaattt
ggagacttcgtacctgatgaaaaggcaccaactccagttgataacattatgaaagaagat
ttacaaggacaaattgaccaaattcttgctcagttaaatgagagagaacaagcggttgta
agaatgagatttggactaatgaatgatgcttctgatagaacacttgaagagattggtaaa
gagctttctgtaacaagagaaagagttagacaaatcgaatctagtgctattaagaaatta
aagcatcctaaagttggtaaaaaccttaaaaactacgtagaaagttaa

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