Poseidonibacter lekithochrous: ALEK_1862
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Entry
ALEK_1862 CDS
T06860
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
alk
Poseidonibacter lekithochrous
Pathway
alk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
alk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ALEK_1862 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
alk03019
]
ALEK_1862 (pnp)
03016 Transfer RNA biogenesis [BR:
alk03016
]
ALEK_1862 (pnp)
Enzymes [BR:
alk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ALEK_1862 (pnp)
Messenger RNA biogenesis [BR:
alk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ALEK_1862 (pnp)
Transfer RNA biogenesis [BR:
alk03016
]
Prokaryotic type
tRNA degradation factors
ALEK_1862 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_2
S1_2
Motif
Other DBs
NCBI-ProteinID:
QKJ23126
LinkDB
All DBs
Position
complement(1969048..1971225)
Genome browser
AA seq
725 aa
AA seq
DB search
MSTVCEFELNEKQEIFEFGKVAKQANGSVLAKLGKAVVLATVVSEFDNPVSEDFTPLTVQ
YIEKTYAAAKLPGGFIKREAKPSEFETLTSRVIDRSLRPLFPKGYVYPTTITVLVLSADK
DVDLQALALNAASAALYTSNLPIKKSVSGVRVGKINGEYVINPTTTELLDSTLDLYVAGT
KDELLMIEMKSISSQELVEVDIEAFTKVHKANEVNESDLVEAIGVAQKALYEANTTYESG
FETASVEKKDVELVEFKIEEEVINYVRDNFSADITEAIKKLAKSERATELKDVAKAISAN
EYCASNEIEFSTIYEAVSIIKRELVRAMIVNDKVRADGRGLRDVRPISIDTNILPSAHSS
CLFTRGETQALVVGTIAGSKDGQMFEKLTEKSTSMDNFLLHYNFPGFSVGEAKPMFGVGR
RELGHGNLGRKALESTIDNDYTETIRLVSEILESNGSSSMATVCGGSLALKAAGVPISDL
VAGVAMGMVVEGDNYSVLTDIMGLEDHDGDMDFKVAGTKDGITALQMDIKLGGIELSVLE
EALLQAKEGREHILGLMETAASEIIPSSALPLVEQFAIDPSKVMVVIGKAGSTIKEIIEK
FSVAIDLDRNSGNVKVSGECKQSVLDACEHIKSISNNAPARKESRNVNFEDLYKVDEILT
GKVERIVDFGAFVSLPKGGEGLLHISKISKQRVKNVSDVLNAGDDVEIKVLKVKRDRIEL
SSSSI
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacagtttgcgaatttgaattaaatgaaaaacaagagatatttgagtttggtaaa
gtagccaaacaagctaatggttctgtattagctaaattaggaaaagcagtagttttagct
actgtagtaagtgagtttgataacccagtatctgaggattttactccacttacagtgcaa
tatattgagaaaacttatgctgctgcaaaattacctggtggatttattaaaagagaagct
aagcctagcgaatttgaaactttaacttcaagagttattgatagaagtttaagacctctt
ttccctaaaggttatgtttatcctacaacaattactgtactggtattaagtgctgataaa
gatgttgacttacaagccttagcattaaatgctgcaagtgctgctttatatacttcaaat
ttaccaattaaaaaatcagtttctggtgtaagagttggaaaaattaatggtgagtacgta
attaatcctactacaactgaattattagactctacattagatttatatgtagctggtaca
aaagatgaattattaatgattgaaatgaaatctatttcatcacaagaattagttgaagtt
gatattgaggcatttacaaaagttcataaagctaatgaagtaaatgaatcagatttagtt
gaagctattggtgttgcacaaaaagctttatatgaagcaaatactacatatgaatctgga
tttgaaacagcaagtgttgagaaaaaagatgtagaactagttgaatttaaaattgaagaa
gaagtgattaattatgttagagataatttctctgctgatattactgaagctattaaaaaa
ttagcaaaatctgagagagcaactgagcttaaagatgtagcaaaagcaatttctgcaaat
gaatattgtgctagtaatgaaattgaatttagtacaatttatgaagcagtttctattatt
aaaagagaattagttagagcaatgattgttaatgataaagttagagcagatggaagaggt
ttaagagacgttagacctatttctattgatactaatattttaccatcagctcattcatct
tgtttatttacaagaggtgaaactcaagctttagttgttggtacaattgcaggaagtaaa
gacggtcaaatgtttgaaaaacttactgaaaaatcaacttctatggataacttcttgtta
cattataacttcccaggtttttctgtaggtgaagctaagccaatgtttggtgtaggtaga
agagaattaggtcatggaaatctaggtagaaaagccttagaatctactattgacaatgat
tacacagaaacaattagattagtatctgagattttagaatcaaacggttcttcttcaatg
gctacagtttgtggtggatctttagcattaaaagcagcaggtgtaccaatctctgattta
gttgctggtgttgctatgggtatggttgttgaaggtgataactattctgttcttactgat
attatgggtcttgaagatcatgatggagatatggactttaaagttgctggtactaaagat
ggtattactgctttacaaatggatattaagcttggtggtattgaattatcagtattagaa
gaagctttattacaagcaaaagagggtagggaacatatcttaggattaatggaaactgca
gcttctgaaattattccaagttcagcattaccattagttgaacaatttgcaattgatcct
tctaaagttatggttgtaattggtaaagctggttctacaattaaagaaattattgaaaaa
ttctcagtagcaattgatttagatagaaattctggaaatgttaaagtttctggtgaatgt
aaacaaagtgttttagatgcttgtgaacatatcaagtcaatttctaataatgctccagca
agaaaagaatcaagaaatgttaactttgaagacttatataaagtagatgagattttaact
ggaaaagttgaaagaattgttgactttggtgcttttgtttctttaccaaaaggtggagaa
ggattattgcatatttctaaaatttctaaacaaagagttaagaatgtatcagatgtatta
aatgcaggtgatgatgtagaaataaaagttttaaaagtaaaaagagatagaatagaatta
tcttctagttctatataa
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